Incidental Mutation 'R9789:Plch2'
ID 734511
Institutional Source Beutler Lab
Gene Symbol Plch2
Ensembl Gene ENSMUSG00000029055
Gene Name phospholipase C, eta 2
Synonyms PLCeta2, Plcl4, A930027K05Rik
MMRRC Submission
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R9789 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 155067572-155141241 bp(-) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) A to G at 155095322 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000119864 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000105631] [ENSMUST00000126098] [ENSMUST00000131173] [ENSMUST00000135665] [ENSMUST00000139976] [ENSMUST00000145662] [ENSMUST00000176194] [ENSMUST00000186598]
AlphaFold A2AP18
Predicted Effect silent
Transcript: ENSMUST00000105631
SMART Domains Protein: ENSMUSP00000101256
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
low complexity region 28 45 N/A INTRINSIC
low complexity region 96 107 N/A INTRINSIC
PH 122 231 1.8e-6 SMART
EFh 247 275 7.29e-4 SMART
EFh 283 312 4.67e-2 SMART
Pfam:EF-hand_like 317 399 1.7e-26 PFAM
PLCXc 400 545 6.76e-76 SMART
low complexity region 559 572 N/A INTRINSIC
low complexity region 659 676 N/A INTRINSIC
PLCYc 707 821 1.25e-56 SMART
C2 840 948 1.66e-21 SMART
low complexity region 1088 1107 N/A INTRINSIC
low complexity region 1227 1236 N/A INTRINSIC
low complexity region 1356 1369 N/A INTRINSIC
low complexity region 1421 1451 N/A INTRINSIC
low complexity region 1454 1466 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000126098
SMART Domains Protein: ENSMUSP00000115440
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
SCOP:d1mai__ 39 58 2e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000131173
SMART Domains Protein: ENSMUSP00000118629
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
Blast:PH 31 111 6e-49 BLAST
SCOP:d1mai__ 34 111 4e-18 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000135665
SMART Domains Protein: ENSMUSP00000118292
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
PH 17 126 1.8e-6 SMART
EFh 142 170 7.29e-4 SMART
EFh 178 207 4.67e-2 SMART
Pfam:EF-hand_like 212 294 2.8e-25 PFAM
PLCXc 295 440 6.76e-76 SMART
low complexity region 454 467 N/A INTRINSIC
low complexity region 554 571 N/A INTRINSIC
PLCYc 602 716 1.25e-56 SMART
C2 735 843 1.66e-21 SMART
low complexity region 983 1002 N/A INTRINSIC
low complexity region 1122 1131 N/A INTRINSIC
low complexity region 1251 1264 N/A INTRINSIC
low complexity region 1316 1346 N/A INTRINSIC
low complexity region 1349 1361 N/A INTRINSIC
Predicted Effect silent
Transcript: ENSMUST00000139976
SMART Domains Protein: ENSMUSP00000122704
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
low complexity region 28 45 N/A INTRINSIC
low complexity region 96 107 N/A INTRINSIC
PH 122 231 1.8e-6 SMART
EFh 247 275 7.29e-4 SMART
EFh 283 312 4.67e-2 SMART
Pfam:EF-hand_like 317 399 3.2e-27 PFAM
PLCXc 400 545 6.76e-76 SMART
low complexity region 559 572 N/A INTRINSIC
low complexity region 659 676 N/A INTRINSIC
PLCYc 707 821 1.25e-56 SMART
C2 840 948 1.66e-21 SMART
low complexity region 1087 1100 N/A INTRINSIC
low complexity region 1166 1194 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000145662
SMART Domains Protein: ENSMUSP00000119864
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
PH 46 155 1.8e-6 SMART
EFh 171 199 7.29e-4 SMART
EFh 207 236 4.67e-2 SMART
Pfam:EF-hand_like 241 323 5.2e-27 PFAM
PLCXc 324 469 6.76e-76 SMART
low complexity region 483 496 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000175982
Predicted Effect probably benign
Transcript: ENSMUST00000176194
SMART Domains Protein: ENSMUSP00000134750
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
PH 21 130 1.8e-6 SMART
EFh 146 174 7.29e-4 SMART
EFh 182 211 4.67e-2 SMART
Pfam:EF-hand_like 216 298 1.6e-25 PFAM
PLCXc 299 444 6.76e-76 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 558 575 N/A INTRINSIC
PLCYc 606 720 1.25e-56 SMART
C2 739 847 1.66e-21 SMART
low complexity region 986 999 N/A INTRINSIC
low complexity region 1065 1093 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000186598
SMART Domains Protein: ENSMUSP00000141152
Gene: ENSMUSG00000029055

DomainStartEndE-ValueType
C2 79 189 5.8e-18 SMART
low complexity region 328 341 N/A INTRINSIC
low complexity region 407 435 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.8%
  • 10x: 99.5%
  • 20x: 98.9%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] PLCH2 is a member of the PLC-eta family of the phosphoinositide-specific phospholipase C (PLC) superfamily of enzymes that cleave PtdIns(4,5) P2 to generate second messengers inositol 1,4,5-trisphosphate and diacylglycerol (Zhou et al., 2005 [PubMed 16107206]).[supplied by OMIM, Jun 2009]
PHENOTYPE: Mice homozygous for a reporter allele exhibit no apparent abnormal phenotype. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2700049A03Rik T A 12: 71,231,357 (GRCm39) S1038R probably benign Het
Aar2 T C 2: 156,392,745 (GRCm39) F45L probably damaging Het
Abcg2 A G 6: 58,641,533 (GRCm39) Y122C probably damaging Het
Arfgef1 A T 1: 10,243,427 (GRCm39) W1041R probably damaging Het
Ash1l A G 3: 88,873,373 (GRCm39) N52S probably benign Het
Asrgl1 T A 19: 9,093,974 (GRCm39) T185S probably damaging Het
Astl T A 2: 127,192,146 (GRCm39) S234T probably damaging Het
Atp5mf T C 5: 145,120,656 (GRCm39) Y87C probably damaging Het
Atxn7l1 A T 12: 33,396,062 (GRCm39) R264W probably damaging Het
Axin2 T C 11: 108,840,180 (GRCm39) Y828H probably damaging Het
Bnipl T C 3: 95,153,140 (GRCm39) D145G possibly damaging Het
C8b A T 4: 104,640,191 (GRCm39) M165L probably benign Het
Cd109 T C 9: 78,541,944 (GRCm39) L87P possibly damaging Het
Cdk17 C T 10: 93,060,891 (GRCm39) P232S probably damaging Het
Cnot1 T C 8: 96,455,772 (GRCm39) E1995G probably damaging Het
Csf2rb2 G A 15: 78,169,196 (GRCm39) A653V probably benign Het
Cutc A G 19: 43,756,699 (GRCm39) N264D probably benign Het
Cxcr4 C T 1: 128,516,884 (GRCm39) W259* probably null Het
Dnah8 T C 17: 30,980,104 (GRCm39) probably null Het
Dsp T C 13: 38,367,937 (GRCm39) I652T probably benign Het
Dstyk A T 1: 132,381,859 (GRCm39) M538L probably benign Het
Eppk1 T A 15: 75,993,219 (GRCm39) I1221F probably benign Het
Ern2 T A 7: 121,769,485 (GRCm39) Y847F probably damaging Het
Exosc7 T A 9: 122,959,990 (GRCm39) V197D probably damaging Het
Gabra1 T C 11: 42,024,352 (GRCm39) Y441C probably damaging Het
Garem1 G A 18: 21,262,985 (GRCm39) P610S possibly damaging Het
Garem2 T A 5: 30,319,330 (GRCm39) V264E probably damaging Het
Gata2 G A 6: 88,177,272 (GRCm39) G101S probably benign Het
Gcnt4 A G 13: 97,083,429 (GRCm39) T242A probably benign Het
Ghitm A C 14: 36,852,719 (GRCm39) Y120* probably null Het
Gimap7 A G 6: 48,700,470 (GRCm39) S19G probably damaging Het
Gm5475 G A 15: 100,324,881 (GRCm39) G103E unknown Het
Gstcd A T 3: 132,790,357 (GRCm39) C137S probably damaging Het
Gtf2b AATCATC AATC 3: 142,477,178 (GRCm39) probably benign Het
Hfm1 T C 5: 107,065,346 (GRCm39) D111G probably benign Het
Ighg2b A G 12: 113,270,304 (GRCm39) I238T Het
Il2ra A C 2: 11,685,161 (GRCm39) M166L probably benign Het
Itga1 A T 13: 115,171,820 (GRCm39) L95* probably null Het
Itpr3 A G 17: 27,308,915 (GRCm39) T373A probably benign Het
Klhl28 A G 12: 64,996,871 (GRCm39) V490A probably damaging Het
Kntc1 A T 5: 123,898,706 (GRCm39) N200I possibly damaging Het
L3mbtl4 A G 17: 68,766,794 (GRCm39) K167R probably benign Het
Lgals1 A T 15: 78,813,930 (GRCm39) T63S probably benign Het
Lnpep C A 17: 17,795,596 (GRCm39) C305F probably damaging Het
Mcm5 C T 8: 75,844,168 (GRCm39) S313F probably benign Het
Mcmbp A G 7: 128,311,583 (GRCm39) I310T possibly damaging Het
Mical2 G A 7: 111,945,996 (GRCm39) R986H probably damaging Het
Muc5b A T 7: 141,415,330 (GRCm39) S2759C possibly damaging Het
Myh7 A G 14: 55,229,384 (GRCm39) V138A possibly damaging Het
Ncr1 T G 7: 4,344,300 (GRCm39) probably null Het
Ndufa10 A T 1: 92,397,610 (GRCm39) D145E possibly damaging Het
Neo1 T A 9: 58,801,307 (GRCm39) probably null Het
Ninl A T 2: 150,791,701 (GRCm39) S941T probably benign Het
Nrm T A 17: 36,172,411 (GRCm39) probably null Het
Nup214 T C 2: 31,907,227 (GRCm39) V1018A possibly damaging Het
Odf1 A G 15: 38,219,716 (GRCm39) I15V probably benign Het
Or10al2 T A 17: 37,983,059 (GRCm39) N48K probably damaging Het
Or10j7 C T 1: 173,011,458 (GRCm39) R181H probably benign Het
Or1e1c A T 11: 73,265,710 (GRCm39) N48I probably damaging Het
Or4b1d T A 2: 89,969,004 (GRCm39) T160S probably benign Het
Or52e18 A T 7: 104,609,657 (GRCm39) I94N probably damaging Het
Or5m10 C T 2: 85,717,338 (GRCm39) H65Y probably damaging Het
Or5p66 A T 7: 107,885,898 (GRCm39) V145D probably benign Het
Or7g32 C A 9: 19,389,382 (GRCm39) D55Y probably benign Het
Osgin2 A T 4: 15,998,957 (GRCm39) Y222N probably damaging Het
Pcdhga10 T C 18: 37,882,363 (GRCm39) V708A probably benign Het
Pfn3 T C 13: 55,562,900 (GRCm39) D27G possibly damaging Het
Plin2 C A 4: 86,576,914 (GRCm39) Q270H probably damaging Het
Polk A G 13: 96,630,403 (GRCm39) F386S probably damaging Het
Prkar1a G A 11: 109,556,778 (GRCm39) G286E probably damaging Het
Prodh A T 16: 17,898,049 (GRCm39) L276Q probably damaging Het
Ranbp10 T C 8: 106,513,306 (GRCm39) N202S probably damaging Het
Rapgef6 C A 11: 54,540,097 (GRCm39) T724K probably benign Het
Rnf144a T A 12: 26,377,574 (GRCm39) K56N probably benign Het
Rpa1 T A 11: 75,203,938 (GRCm39) K303I probably damaging Het
Slc16a9 A C 10: 70,118,340 (GRCm39) N220H possibly damaging Het
Slc28a3 T C 13: 58,724,664 (GRCm39) I197V probably benign Het
Slc35d1 A T 4: 103,071,946 (GRCm39) F19I Het
Sohlh2 A T 3: 55,099,721 (GRCm39) E164D probably damaging Het
Sord A T 2: 122,093,765 (GRCm39) K295* probably null Het
Spata31d1b A G 13: 59,860,196 (GRCm39) Y23C probably benign Het
Stard9 T A 2: 120,510,417 (GRCm39) Y333N probably damaging Het
Tas2r107 A G 6: 131,636,753 (GRCm39) F99L probably damaging Het
Thap12 C T 7: 98,352,592 (GRCm39) probably benign Het
Tmprss9 A T 10: 80,730,993 (GRCm39) T840S probably benign Het
Trim16 T A 11: 62,720,026 (GRCm39) probably null Het
Ttc16 C T 2: 32,664,805 (GRCm39) probably null Het
Ttn C T 2: 76,715,357 (GRCm39) E7912K unknown Het
Unc80 A T 1: 66,651,371 (GRCm39) Y1572F possibly damaging Het
Usp42 G T 5: 143,706,060 (GRCm39) A320D possibly damaging Het
Vmn2r94 T C 17: 18,464,038 (GRCm39) T751A probably damaging Het
Zbtb41 C T 1: 139,368,084 (GRCm39) L591F probably damaging Het
Zdhhc5 T A 2: 84,524,662 (GRCm39) E219D probably damaging Het
Zfp248 A T 6: 118,406,012 (GRCm39) F526I probably damaging Het
Zfp322a T C 13: 23,540,558 (GRCm39) K395E possibly damaging Het
Zfp423 G A 8: 88,506,877 (GRCm39) P1156S probably benign Het
Zfp644 T C 5: 106,786,131 (GRCm39) T139A possibly damaging Het
Other mutations in Plch2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00088:Plch2 APN 4 155,091,099 (GRCm39) missense probably damaging 1.00
IGL02024:Plch2 APN 4 155,127,595 (GRCm39) intron probably benign
IGL02580:Plch2 APN 4 155,069,221 (GRCm39) missense probably benign 0.03
IGL03370:Plch2 APN 4 155,071,371 (GRCm39) missense probably benign 0.18
IGL03407:Plch2 APN 4 155,074,255 (GRCm39) missense probably damaging 1.00
tolerant UTSW 4 155,069,092 (GRCm39) missense probably benign 0.01
PIT4418001:Plch2 UTSW 4 155,073,960 (GRCm39) missense probably damaging 1.00
PIT4445001:Plch2 UTSW 4 155,093,483 (GRCm39) missense probably damaging 1.00
R0117:Plch2 UTSW 4 155,069,815 (GRCm39) unclassified probably benign
R0347:Plch2 UTSW 4 155,071,178 (GRCm39) missense possibly damaging 0.91
R0361:Plch2 UTSW 4 155,091,168 (GRCm39) missense possibly damaging 0.95
R0413:Plch2 UTSW 4 155,091,373 (GRCm39) critical splice donor site probably null
R0487:Plch2 UTSW 4 155,093,469 (GRCm39) missense probably damaging 1.00
R0514:Plch2 UTSW 4 155,083,343 (GRCm39) missense probably damaging 1.00
R0734:Plch2 UTSW 4 155,080,740 (GRCm39) missense probably damaging 1.00
R0766:Plch2 UTSW 4 155,074,256 (GRCm39) missense probably damaging 1.00
R1306:Plch2 UTSW 4 155,091,597 (GRCm39) missense probably damaging 1.00
R1312:Plch2 UTSW 4 155,074,256 (GRCm39) missense probably damaging 1.00
R1467:Plch2 UTSW 4 155,068,189 (GRCm39) missense probably benign 0.02
R1467:Plch2 UTSW 4 155,068,189 (GRCm39) missense probably benign 0.02
R1602:Plch2 UTSW 4 155,068,907 (GRCm39) missense probably damaging 0.99
R1717:Plch2 UTSW 4 155,082,729 (GRCm39) missense probably benign
R1731:Plch2 UTSW 4 155,091,451 (GRCm39) missense possibly damaging 0.83
R1769:Plch2 UTSW 4 155,084,540 (GRCm39) missense probably damaging 1.00
R1875:Plch2 UTSW 4 155,082,965 (GRCm39) missense probably damaging 1.00
R1974:Plch2 UTSW 4 155,069,410 (GRCm39) missense possibly damaging 0.77
R2031:Plch2 UTSW 4 155,127,484 (GRCm39) intron probably benign
R2050:Plch2 UTSW 4 155,085,275 (GRCm39) missense probably benign 0.00
R2061:Plch2 UTSW 4 155,127,298 (GRCm39) intron probably benign
R2073:Plch2 UTSW 4 155,074,366 (GRCm39) missense probably damaging 1.00
R2075:Plch2 UTSW 4 155,074,366 (GRCm39) missense probably damaging 1.00
R2109:Plch2 UTSW 4 155,069,054 (GRCm39) missense possibly damaging 0.92
R2126:Plch2 UTSW 4 155,083,456 (GRCm39) missense probably damaging 1.00
R2265:Plch2 UTSW 4 155,077,461 (GRCm39) missense probably benign 0.06
R2266:Plch2 UTSW 4 155,077,461 (GRCm39) missense probably benign 0.06
R2269:Plch2 UTSW 4 155,077,461 (GRCm39) missense probably benign 0.06
R2280:Plch2 UTSW 4 155,068,766 (GRCm39) missense probably damaging 1.00
R2281:Plch2 UTSW 4 155,068,766 (GRCm39) missense probably damaging 1.00
R2432:Plch2 UTSW 4 155,070,621 (GRCm39) makesense probably null
R2971:Plch2 UTSW 4 155,075,224 (GRCm39) missense probably benign 0.29
R3437:Plch2 UTSW 4 155,075,470 (GRCm39) critical splice donor site probably null
R3980:Plch2 UTSW 4 155,069,255 (GRCm39) missense probably benign 0.00
R4757:Plch2 UTSW 4 155,080,690 (GRCm39) missense possibly damaging 0.88
R4827:Plch2 UTSW 4 155,075,570 (GRCm39) missense probably damaging 1.00
R4828:Plch2 UTSW 4 155,069,092 (GRCm39) missense probably benign 0.01
R4869:Plch2 UTSW 4 155,073,885 (GRCm39) missense probably benign 0.28
R5020:Plch2 UTSW 4 155,091,540 (GRCm39) missense probably damaging 1.00
R5050:Plch2 UTSW 4 155,127,766 (GRCm39) intron probably benign
R5126:Plch2 UTSW 4 155,084,976 (GRCm39) missense probably damaging 1.00
R5237:Plch2 UTSW 4 155,095,251 (GRCm39) missense probably benign
R5274:Plch2 UTSW 4 155,083,411 (GRCm39) missense probably damaging 1.00
R5296:Plch2 UTSW 4 155,074,456 (GRCm39) splice site probably null
R5324:Plch2 UTSW 4 155,068,991 (GRCm39) missense probably benign
R5475:Plch2 UTSW 4 155,084,594 (GRCm39) missense probably damaging 1.00
R5494:Plch2 UTSW 4 155,075,579 (GRCm39) missense probably damaging 1.00
R5811:Plch2 UTSW 4 155,077,024 (GRCm39) missense possibly damaging 0.62
R6083:Plch2 UTSW 4 155,085,275 (GRCm39) missense probably benign 0.00
R6092:Plch2 UTSW 4 155,068,829 (GRCm39) missense probably benign 0.02
R6253:Plch2 UTSW 4 155,091,558 (GRCm39) missense probably damaging 1.00
R6456:Plch2 UTSW 4 155,077,459 (GRCm39) missense probably damaging 1.00
R7038:Plch2 UTSW 4 155,074,489 (GRCm39) splice site probably null
R7084:Plch2 UTSW 4 155,071,448 (GRCm39) missense probably benign 0.31
R7210:Plch2 UTSW 4 155,093,543 (GRCm39) missense probably damaging 1.00
R7216:Plch2 UTSW 4 155,068,685 (GRCm39) missense probably benign
R7264:Plch2 UTSW 4 155,083,424 (GRCm39) missense probably damaging 0.98
R7291:Plch2 UTSW 4 155,082,929 (GRCm39) missense probably damaging 1.00
R7423:Plch2 UTSW 4 155,068,194 (GRCm39) missense probably damaging 1.00
R7436:Plch2 UTSW 4 155,068,553 (GRCm39) missense probably benign 0.01
R7438:Plch2 UTSW 4 155,084,917 (GRCm39) missense probably damaging 1.00
R7594:Plch2 UTSW 4 155,091,484 (GRCm39) missense probably damaging 1.00
R7663:Plch2 UTSW 4 155,075,619 (GRCm39) missense probably damaging 0.96
R7698:Plch2 UTSW 4 155,087,244 (GRCm39) missense possibly damaging 0.95
R7844:Plch2 UTSW 4 155,073,922 (GRCm39) missense probably damaging 1.00
R7939:Plch2 UTSW 4 155,087,235 (GRCm39) missense possibly damaging 0.91
R8003:Plch2 UTSW 4 155,138,980 (GRCm39) missense unknown
R8007:Plch2 UTSW 4 155,087,288 (GRCm39) missense probably damaging 1.00
R8281:Plch2 UTSW 4 155,091,430 (GRCm39) missense probably benign 0.07
R8434:Plch2 UTSW 4 155,074,192 (GRCm39) missense probably damaging 1.00
R8504:Plch2 UTSW 4 155,068,852 (GRCm39) missense probably benign 0.31
R8516:Plch2 UTSW 4 155,070,764 (GRCm39) missense probably benign
R8558:Plch2 UTSW 4 155,083,391 (GRCm39) missense probably damaging 1.00
R8722:Plch2 UTSW 4 155,069,860 (GRCm39) unclassified probably benign
R8768:Plch2 UTSW 4 155,083,324 (GRCm39) missense probably damaging 1.00
R8787:Plch2 UTSW 4 155,070,875 (GRCm39) missense probably benign 0.00
R8826:Plch2 UTSW 4 155,071,140 (GRCm39) missense probably benign 0.00
R8955:Plch2 UTSW 4 155,077,023 (GRCm39) missense probably benign 0.00
R9032:Plch2 UTSW 4 155,084,976 (GRCm39) missense probably damaging 1.00
R9085:Plch2 UTSW 4 155,084,976 (GRCm39) missense probably damaging 1.00
R9423:Plch2 UTSW 4 155,071,049 (GRCm39) missense
R9649:Plch2 UTSW 4 155,068,516 (GRCm39) missense probably benign
R9652:Plch2 UTSW 4 155,082,942 (GRCm39) missense probably benign
R9725:Plch2 UTSW 4 155,084,992 (GRCm39) missense probably damaging 1.00
R9742:Plch2 UTSW 4 155,082,912 (GRCm39) missense probably damaging 0.99
RF014:Plch2 UTSW 4 155,091,577 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGCCATCTTGGTGACACTAC -3'
(R):5'- CAGGATTACTGGGCGGATTG -3'

Sequencing Primer
(F):5'- TTGGTGACACTACCACGC -3'
(R):5'- GTGAGGCTTGGCAGCTC -3'
Posted On 2022-11-14