Mutagenetix > Incidental Mutation

Incidental Mutation 'R9803:Gm28042'

735300

Institutional Source

Beutler Lab

Gene Symbol

Gm28042

Ensembl Gene

ENSMUSG00000033852

Gene Name

predicted gene, 28042

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.409) question?

Stock #

R9803 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

120027493-120043033 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 120038503 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 526 (V526E)

Ref Sequence

ENSEMBL: ENSMUSP00000115498 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000126150] [ENSMUST00000129685] [ENSMUST00000156805] [ENSMUST00000162393]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000125805

SMART Domains

Protein: ENSMUSP00000122869
Gene: ENSMUSG00000033852

Domain	Start	End	E-Value	Type
Pfam:Cupin_8	2	62	2.8e-27	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000126150
AA Change: V303E

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000118458
Gene: ENSMUSG00000098488
AA Change: V303E

Domain	Start	End	E-Value	Type
C2	19	119	1.79e-17	SMART
PLAc	233	789	1.99e-10	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000129685
AA Change: V526E

PolyPhen 2 Score 0.884 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000115498
Gene: ENSMUSG00000033852
AA Change: V526E

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
JmjC	128	308	1.65e-4	SMART
C2	242	342	1.79e-17	SMART
PLAc	456	1012	1.99e-10	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000156805
AA Change: V526E

PolyPhen 2 Score 0.781 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000117535
Gene: ENSMUSG00000033852
AA Change: V526E

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
JmjC	128	308	1.65e-4	SMART
C2	242	342	1.79e-17	SMART
PLAc	456	892	8.56e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162393

SMART Domains

Protein: ENSMUSP00000125329
Gene: ENSMUSG00000033852

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
JmjC	128	242	4.42e-3	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.4%
20x: 98.4%

Validation Efficiency

MGI Phenotype

FUNCTION: This locus represents naturally-occurring readthrough transcription between the neighboring Jmjd7 (jumonji domain containing 7) and Pla2g4b (phospholipase A2, group IVB (cytosolic)) genes on chromosome 2. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Oct 2013]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700069L16Rik	A	G	5: 113,703,903	S52P	unknown	Het
Ank2	A	G	3: 126,959,077	M330T	possibly damaging	Het
Ankar	C	T	1: 72,659,181	V905I	possibly damaging	Het
Anln	G	T	9: 22,372,222	D438E	probably damaging	Het
C1ql3	T	C	2: 13,004,389	N215S	probably damaging	Het
Ccdc110	A	G	8: 45,942,589	S506G	probably benign	Het
Ccdc87	A	G	19: 4,841,147	T556A	probably benign	Het
Cma1	A	T	14: 55,941,729	N236K	probably benign	Het
Csmd2	T	C	4: 128,369,193	F724S		Het
Cts8	T	C	13: 61,253,322	K130R	possibly damaging	Het
Daam1	A	T	12: 71,944,148	T179S	unknown	Het
Fancd2os	T	C	6: 113,597,977	T23A	possibly damaging	Het
Gbgt1	T	A	2: 28,504,854	I168N	probably damaging	Het
Gckr	G	A	5: 31,300,024	G127D	probably damaging	Het
Gm11444	G	A	11: 85,846,873	Q164*	probably null	Het
Gm8947	T	C	1: 151,192,971	V185A	possibly damaging	Het
Hoxd13	C	A	2: 74,668,903	H198Q	possibly damaging	Het
Hps6	T	A	19: 46,005,508	L628*	probably null	Het
Igha	G	A	12: 113,259,139	H221Y		Het
Ighm	A	G	12: 113,419,015	S453P		Het
Inpp5f	A	C	7: 128,676,791	D435A	possibly damaging	Het
Lfng	A	G	5: 140,607,773	T120A	probably damaging	Het
Lrrc4	C	T	6: 28,662,200	A172T	probably benign	Het
Lrrc56	A	G	7: 141,207,607	T386A	probably benign	Het
Mapkbp1	A	T	2: 120,010,775	H81L	probably benign	Het
Mfsd14b	C	A	13: 65,073,600	V293L	probably benign	Het
Mrto4	T	A	4: 139,349,070	N70I	probably damaging	Het
Mxra8	C	T	4: 155,839,825		probably benign	Het
Myo1h	A	G	5: 114,345,936	E548G		Het
Ncan	C	T	8: 70,108,101	D739N	probably benign	Het
Olfr315	T	C	11: 58,778,769	V214A	probably benign	Het
Oxgr1	T	C	14: 120,022,151	T215A	possibly damaging	Het
Pcdhgb7	T	A	18: 37,752,035	V86E	probably damaging	Het
Pclo	G	A	5: 14,712,615	V416M		Het
Phf3	G	T	1: 30,830,791	T392K	probably benign	Het
Pkhd1	A	T	1: 20,566,849	V379E	probably damaging	Het
Ppfia3	T	C	7: 45,341,115	Y1080C	probably benign	Het
Ptprs	C	A	17: 56,422,217	G1254C	probably damaging	Het
Qsox1	A	T	1: 155,782,670	D384E	probably benign	Het
Rergl	A	G	6: 139,500,763	F23L	probably damaging	Het
Shank1	G	A	7: 44,312,918	S71N	unknown	Het
Sidt2	A	G	9: 45,943,614	Y588H	probably damaging	Het
Tas2r139	T	A	6: 42,141,132	I66K	probably damaging	Het
Tbc1d30	T	A	10: 121,272,075	D474V	probably damaging	Het
Tenm4	G	A	7: 96,553,478	G100D	probably damaging	Het
Tmem258	G	A	19: 10,207,273	V75I	probably benign	Het
Tmem91	G	T	7: 25,670,563	H95N	probably damaging	Het
Trps1	T	C	15: 50,846,694	K87E	possibly damaging	Het
Tspan11	T	A	6: 127,943,717	M209K	probably benign	Het
Tspan17	C	A	13: 54,793,279	Q124K	probably benign	Het
Uts2b	G	A	16: 27,360,942	R105*	probably null	Het
Vmn2r110	T	A	17: 20,583,468	T282S	probably benign	Het
Xdh	T	A	17: 73,922,460	M333L	probably benign	Het
Zbtb3	A	G	19: 8,804,469	E482G	probably damaging	Het

Other mutations in Gm28042

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00754:Gm28042	APN	2	120030356	missense	probably damaging	1.00
IGL01148:Gm28042	APN	2	120039038	missense	possibly damaging	0.74
IGL02005:Gm28042	APN	2	120034634	missense	possibly damaging	0.95
IGL02237:Gm28042	APN	2	120039899	missense	possibly damaging	0.61
IGL02539:Gm28042	APN	2	120035221	missense	probably damaging	1.00
IGL02747:Gm28042	APN	2	120031394	missense	probably damaging	1.00
IGL02825:Gm28042	APN	2	120031644	missense	probably damaging	0.99
IGL02998:Gm28042	APN	2	120040154	missense	possibly damaging	0.70
IGL03057:Gm28042	APN	2	120032156	missense	probably damaging	1.00
IGL03084:Gm28042	APN	2	120040505	missense	probably benign	0.08
IGL03160:Gm28042	APN	2	120035828	missense	possibly damaging	0.94
PIT4520001:Gm28042	UTSW	2	120039667	nonsense	probably null
R0147:Gm28042	UTSW	2	120036463	missense	probably benign	0.00
R0270:Gm28042	UTSW	2	120041592	missense	probably benign	0.06
R0315:Gm28042	UTSW	2	120039057	missense	probably damaging	1.00
R1421:Gm28042	UTSW	2	120036463	missense	probably benign	0.00
R1589:Gm28042	UTSW	2	120041406	missense	probably benign	0.05
R1599:Gm28042	UTSW	2	120036463	missense	probably benign	0.00
R1656:Gm28042	UTSW	2	120038889	missense	probably damaging	1.00
R1718:Gm28042	UTSW	2	120036391	missense	possibly damaging	0.78
R1969:Gm28042	UTSW	2	120041615	makesense	probably null
R2164:Gm28042	UTSW	2	120036748	missense	probably benign	0.01
R2275:Gm28042	UTSW	2	120036829	missense	probably damaging	1.00
R3976:Gm28042	UTSW	2	120036756	missense	probably benign	0.11
R4483:Gm28042	UTSW	2	120035840	missense	possibly damaging	0.68
R4614:Gm28042	UTSW	2	120041158	missense	probably damaging	0.99
R4802:Gm28042	UTSW	2	120042054	utr 3 prime	probably benign
R4976:Gm28042	UTSW	2	120034643	missense	probably damaging	1.00
R5119:Gm28042	UTSW	2	120034643	missense	probably damaging	1.00
R5177:Gm28042	UTSW	2	120041601	splice site	probably null
R5340:Gm28042	UTSW	2	120041448	missense	probably benign
R5861:Gm28042	UTSW	2	120034635	missense	probably damaging	1.00
R6641:Gm28042	UTSW	2	120039683	missense	probably damaging	1.00
R7187:Gm28042	UTSW	2	120039695	missense	probably damaging	1.00
R7488:Gm28042	UTSW	2	120039957	missense	probably benign	0.00
R7699:Gm28042	UTSW	2	120039716	missense	possibly damaging	0.81
R7700:Gm28042	UTSW	2	120039716	missense	possibly damaging	0.81
R8432:Gm28042	UTSW	2	120038596	missense	probably damaging	1.00
R9120:Gm28042	UTSW	2	120038981	missense	probably damaging	0.96
R9265:Gm28042	UTSW	2	120041224	missense	probably damaging	1.00
X0019:Gm28042	UTSW	2	120039658	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGAGCCCTGATGTTTGAAAC -3'
(R):5'- ATGGGGCCTAGGAATTCCTTC -3'

Sequencing Primer
(F):5'- GTTTGAAACAGCAAGACCTTTGG -3'
(R):5'- GGAATTCCTTCCCACTACATTCC -3'

Posted On

2022-11-14