Incidental Mutation 'R9803:Ppfia3'
| ID |
735317 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ppfia3
|
| Ensembl Gene |
ENSMUSG00000003863 |
| Gene Name |
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 |
| Synonyms |
2410127E16Rik, Liprin-alpha3 |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.252)
|
| Stock # |
R9803 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
44988550-45016443 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 44990539 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 1080
(Y1080C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000003961
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003961]
[ENSMUST00000085351]
[ENSMUST00000210248]
[ENSMUST00000211067]
[ENSMUST00000211327]
|
| AlphaFold |
P60469 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000003961
AA Change: Y1080C
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000003961
Gene: ENSMUSG00000003863
AA Change: Y1080C
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
27 |
129 |
N/A |
INTRINSIC |
|
coiled coil region
|
167 |
426 |
N/A |
INTRINSIC |
|
coiled coil region
|
448 |
500 |
N/A |
INTRINSIC |
|
low complexity region
|
534 |
550 |
N/A |
INTRINSIC |
|
coiled coil region
|
597 |
642 |
N/A |
INTRINSIC |
|
low complexity region
|
651 |
672 |
N/A |
INTRINSIC |
|
low complexity region
|
707 |
719 |
N/A |
INTRINSIC |
|
SAM
|
835 |
904 |
1.46e-10 |
SMART |
|
SAM
|
950 |
1017 |
8.22e-5 |
SMART |
|
SAM
|
1038 |
1110 |
3.58e-5 |
SMART |
|
low complexity region
|
1156 |
1169 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000085351
|
| SMART Domains |
Protein: ENSMUSP00000082459
Gene: ENSMUSG00000038239
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
|
low complexity region
|
32 |
45 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
51 |
146 |
8.76e-11 |
PROSPERO |
|
low complexity region
|
154 |
189 |
N/A |
INTRINSIC |
|
Pfam:Hist_rich_Ca-bd
|
213 |
225 |
1e-4 |
PFAM |
|
low complexity region
|
240 |
254 |
N/A |
INTRINSIC |
|
low complexity region
|
260 |
274 |
N/A |
INTRINSIC |
|
low complexity region
|
287 |
304 |
N/A |
INTRINSIC |
|
Pfam:Hist_rich_Ca-bd
|
308 |
324 |
2.2e-8 |
PFAM |
|
low complexity region
|
340 |
353 |
N/A |
INTRINSIC |
|
low complexity region
|
362 |
382 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
399 |
490 |
8.76e-11 |
PROSPERO |
|
coiled coil region
|
536 |
565 |
N/A |
INTRINSIC |
|
low complexity region
|
571 |
582 |
N/A |
INTRINSIC |
|
coiled coil region
|
594 |
621 |
N/A |
INTRINSIC |
|
low complexity region
|
632 |
648 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000210248
AA Change: Y920C
PolyPhen 2
Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000211067
AA Change: Y1080C
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000211327
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.8%
- 10x: 99.4%
- 20x: 98.4%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the LAR protein-tyrosine phosphatase-interacting protein (liprin) family. Liprins interact with members of LAR family of transmembrane protein tyrosine phosphatases, which are known to be important for axon guidance and mammary gland development. Liprin family protein has been shown to localize phosphatase LAR to cell focal adhesions and may be involved in the molecular organization of presynaptic active zones. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 54 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700069L16Rik |
A |
G |
5: 113,841,964 (GRCm39) |
S52P |
unknown |
Het |
| Ank2 |
A |
G |
3: 126,752,726 (GRCm39) |
M330T |
possibly damaging |
Het |
| Ankar |
C |
T |
1: 72,698,340 (GRCm39) |
V905I |
possibly damaging |
Het |
| Anln |
G |
T |
9: 22,283,518 (GRCm39) |
D438E |
probably damaging |
Het |
| C1ql3 |
T |
C |
2: 13,009,200 (GRCm39) |
N215S |
probably damaging |
Het |
| Ccdc110 |
A |
G |
8: 46,395,626 (GRCm39) |
S506G |
probably benign |
Het |
| Ccdc87 |
A |
G |
19: 4,891,175 (GRCm39) |
T556A |
probably benign |
Het |
| Cma1 |
A |
T |
14: 56,179,186 (GRCm39) |
N236K |
probably benign |
Het |
| Csmd2 |
T |
C |
4: 128,262,986 (GRCm39) |
F724S |
|
Het |
| Cts8 |
T |
C |
13: 61,401,136 (GRCm39) |
K130R |
possibly damaging |
Het |
| Daam1 |
A |
T |
12: 71,990,922 (GRCm39) |
T179S |
unknown |
Het |
| Fancd2os |
T |
C |
6: 113,574,938 (GRCm39) |
T23A |
possibly damaging |
Het |
| Gbgt1 |
T |
A |
2: 28,394,866 (GRCm39) |
I168N |
probably damaging |
Het |
| Gckr |
G |
A |
5: 31,457,368 (GRCm39) |
G127D |
probably damaging |
Het |
| Gm11444 |
G |
A |
11: 85,737,699 (GRCm39) |
Q164* |
probably null |
Het |
| Gm28042 |
T |
A |
2: 119,868,984 (GRCm39) |
V526E |
possibly damaging |
Het |
| Gm8947 |
T |
C |
1: 151,068,722 (GRCm39) |
V185A |
possibly damaging |
Het |
| Hoxd13 |
C |
A |
2: 74,499,247 (GRCm39) |
H198Q |
possibly damaging |
Het |
| Hps6 |
T |
A |
19: 45,993,947 (GRCm39) |
L628* |
probably null |
Het |
| Igha |
G |
A |
12: 113,222,759 (GRCm39) |
H221Y |
|
Het |
| Ighm |
A |
G |
12: 113,382,635 (GRCm39) |
S453P |
|
Het |
| Inpp5f |
A |
C |
7: 128,278,515 (GRCm39) |
D435A |
possibly damaging |
Het |
| Lfng |
A |
G |
5: 140,593,528 (GRCm39) |
T120A |
probably damaging |
Het |
| Lrrc4 |
C |
T |
6: 28,662,199 (GRCm39) |
A172T |
probably benign |
Het |
| Lrrc56 |
A |
G |
7: 140,787,520 (GRCm39) |
T386A |
probably benign |
Het |
| Mapkbp1 |
A |
T |
2: 119,841,256 (GRCm39) |
H81L |
probably benign |
Het |
| Mfsd14b |
C |
A |
13: 65,221,414 (GRCm39) |
V293L |
probably benign |
Het |
| Mrto4 |
T |
A |
4: 139,076,381 (GRCm39) |
N70I |
probably damaging |
Het |
| Mxra8 |
C |
T |
4: 155,924,282 (GRCm39) |
|
probably benign |
Het |
| Myo1h |
A |
G |
5: 114,483,997 (GRCm39) |
E548G |
|
Het |
| Ncan |
C |
T |
8: 70,560,751 (GRCm39) |
D739N |
probably benign |
Het |
| Or2t45 |
T |
C |
11: 58,669,595 (GRCm39) |
V214A |
probably benign |
Het |
| Oxgr1 |
T |
C |
14: 120,259,563 (GRCm39) |
T215A |
possibly damaging |
Het |
| Pcdhgb7 |
T |
A |
18: 37,885,088 (GRCm39) |
V86E |
probably damaging |
Het |
| Pclo |
G |
A |
5: 14,762,629 (GRCm39) |
V416M |
|
Het |
| Phf3 |
G |
T |
1: 30,869,872 (GRCm39) |
T392K |
probably benign |
Het |
| Pkhd1 |
A |
T |
1: 20,637,073 (GRCm39) |
V379E |
probably damaging |
Het |
| Ptprs |
C |
A |
17: 56,729,217 (GRCm39) |
G1254C |
probably damaging |
Het |
| Qsox1 |
A |
T |
1: 155,658,416 (GRCm39) |
D384E |
probably benign |
Het |
| Rergl |
A |
G |
6: 139,477,761 (GRCm39) |
F23L |
probably damaging |
Het |
| Shank1 |
G |
A |
7: 43,962,342 (GRCm39) |
S71N |
unknown |
Het |
| Sidt2 |
A |
G |
9: 45,854,912 (GRCm39) |
Y588H |
probably damaging |
Het |
| Tas2r139 |
T |
A |
6: 42,118,066 (GRCm39) |
I66K |
probably damaging |
Het |
| Tbc1d30 |
T |
A |
10: 121,107,980 (GRCm39) |
D474V |
probably damaging |
Het |
| Tenm4 |
G |
A |
7: 96,202,685 (GRCm39) |
G100D |
probably damaging |
Het |
| Tmem258 |
G |
A |
19: 10,184,637 (GRCm39) |
V75I |
probably benign |
Het |
| Tmem91 |
G |
T |
7: 25,369,988 (GRCm39) |
H95N |
probably damaging |
Het |
| Trps1 |
T |
C |
15: 50,710,090 (GRCm39) |
K87E |
possibly damaging |
Het |
| Tspan11 |
T |
A |
6: 127,920,680 (GRCm39) |
M209K |
probably benign |
Het |
| Tspan17 |
C |
A |
13: 54,941,092 (GRCm39) |
Q124K |
probably benign |
Het |
| Uts2b |
G |
A |
16: 27,179,692 (GRCm39) |
R105* |
probably null |
Het |
| Vmn2r110 |
T |
A |
17: 20,803,730 (GRCm39) |
T282S |
probably benign |
Het |
| Xdh |
T |
A |
17: 74,229,455 (GRCm39) |
M333L |
probably benign |
Het |
| Zbtb3 |
A |
G |
19: 8,781,833 (GRCm39) |
E482G |
probably damaging |
Het |
|
| Other mutations in Ppfia3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01783:Ppfia3
|
APN |
7 |
45,009,481 (GRCm39) |
splice site |
probably null |
|
|
IGL02086:Ppfia3
|
APN |
7 |
44,989,996 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02160:Ppfia3
|
APN |
7 |
45,009,475 (GRCm39) |
splice site |
probably benign |
|
|
IGL02373:Ppfia3
|
APN |
7 |
45,008,273 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02417:Ppfia3
|
APN |
7 |
44,991,141 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02501:Ppfia3
|
APN |
7 |
45,004,362 (GRCm39) |
splice site |
probably benign |
|
|
IGL02638:Ppfia3
|
APN |
7 |
45,006,092 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03084:Ppfia3
|
APN |
7 |
44,989,651 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0207:Ppfia3
|
UTSW |
7 |
44,997,958 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0962:Ppfia3
|
UTSW |
7 |
44,997,146 (GRCm39) |
splice site |
probably benign |
|
|
R1086:Ppfia3
|
UTSW |
7 |
45,011,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1146:Ppfia3
|
UTSW |
7 |
45,001,639 (GRCm39) |
missense |
probably benign |
0.19 |
|
R1146:Ppfia3
|
UTSW |
7 |
45,001,639 (GRCm39) |
missense |
probably benign |
0.19 |
|
R1566:Ppfia3
|
UTSW |
7 |
44,990,112 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1677:Ppfia3
|
UTSW |
7 |
45,006,090 (GRCm39) |
missense |
probably benign |
0.03 |
|
R1876:Ppfia3
|
UTSW |
7 |
45,001,631 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R2219:Ppfia3
|
UTSW |
7 |
45,004,314 (GRCm39) |
nonsense |
probably null |
|
|
R2336:Ppfia3
|
UTSW |
7 |
45,006,121 (GRCm39) |
splice site |
probably null |
|
|
R2843:Ppfia3
|
UTSW |
7 |
45,005,852 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2844:Ppfia3
|
UTSW |
7 |
45,005,852 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2846:Ppfia3
|
UTSW |
7 |
45,005,852 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4669:Ppfia3
|
UTSW |
7 |
45,001,517 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4777:Ppfia3
|
UTSW |
7 |
44,990,581 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4787:Ppfia3
|
UTSW |
7 |
44,990,050 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R4994:Ppfia3
|
UTSW |
7 |
44,990,542 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5042:Ppfia3
|
UTSW |
7 |
44,991,765 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5821:Ppfia3
|
UTSW |
7 |
45,003,040 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6116:Ppfia3
|
UTSW |
7 |
45,004,127 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6515:Ppfia3
|
UTSW |
7 |
44,989,657 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R6868:Ppfia3
|
UTSW |
7 |
45,003,036 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6920:Ppfia3
|
UTSW |
7 |
45,008,231 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R6935:Ppfia3
|
UTSW |
7 |
45,001,631 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R6978:Ppfia3
|
UTSW |
7 |
44,996,272 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7017:Ppfia3
|
UTSW |
7 |
45,008,224 (GRCm39) |
missense |
probably benign |
|
|
R7027:Ppfia3
|
UTSW |
7 |
45,004,160 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R7078:Ppfia3
|
UTSW |
7 |
45,010,019 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7256:Ppfia3
|
UTSW |
7 |
44,991,167 (GRCm39) |
missense |
probably benign |
0.43 |
|
R7378:Ppfia3
|
UTSW |
7 |
45,010,870 (GRCm39) |
splice site |
probably null |
|
|
R7570:Ppfia3
|
UTSW |
7 |
44,990,172 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7814:Ppfia3
|
UTSW |
7 |
45,001,686 (GRCm39) |
missense |
probably benign |
|
|
R8298:Ppfia3
|
UTSW |
7 |
45,009,618 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8712:Ppfia3
|
UTSW |
7 |
45,011,129 (GRCm39) |
missense |
probably benign |
0.43 |
|
R8781:Ppfia3
|
UTSW |
7 |
44,997,953 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8843:Ppfia3
|
UTSW |
7 |
44,997,941 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8901:Ppfia3
|
UTSW |
7 |
44,991,141 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8984:Ppfia3
|
UTSW |
7 |
44,990,100 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9149:Ppfia3
|
UTSW |
7 |
44,999,717 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R9284:Ppfia3
|
UTSW |
7 |
45,011,222 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9427:Ppfia3
|
UTSW |
7 |
45,008,213 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R9683:Ppfia3
|
UTSW |
7 |
45,005,999 (GRCm39) |
missense |
probably benign |
0.29 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCAACTTGGGAAACTAGACCTC -3'
(R):5'- CTGGGAGGTGCACAGTTAAG -3'
Sequencing Primer
(F):5'- TTGGGAAACTAGACCTCATTGCC -3'
(R):5'- AGGTGCACAGTTAAGAGTCCCTTTC -3'
|
| Posted On |
2022-11-14 |
Incidental Mutation