Mutagenetix > Incidental Mutation

Incidental Mutation 'R9655:Exd1'

735430

Institutional Source

Beutler Lab

Gene Symbol

Exd1

Ensembl Gene

ENSMUSG00000048647

Gene Name

exonuclease 3'-5' domain containing 1

Synonyms

Exdl1, 4932702D22Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9655 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

119346986-119378108 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 119350855 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Serine at position 469 (C469S)

Ref Sequence

ENSEMBL: ENSMUSP00000054980 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060009] [ENSMUST00000171024]

AlphaFold

Q8CDF7

Predicted Effect

probably damaging
Transcript: ENSMUST00000060009
AA Change: C469S

PolyPhen 2 Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000054980
Gene: ENSMUSG00000048647
AA Change: C469S

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000171024
AA Change: C469S

PolyPhen 2 Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000126713
Gene: ENSMUSG00000048647
AA Change: C469S

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.4%
20x: 98.7%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are fertile and viable, but exhibit defective biogenesis of antisense piRNAs and activation of transposons in male germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933402N03Rik	T	A	7: 130,740,695 (GRCm39)	I174F	possibly damaging	Het
Ada	C	A	2: 163,574,270 (GRCm39)	V129F	probably damaging	Het
Adgrl4	G	T	3: 151,248,450 (GRCm39)	M707I	probably damaging	Het
Ahcyl	A	T	16: 45,974,564 (GRCm39)	I271N	probably damaging	Het
Arrb2	A	G	11: 70,331,073 (GRCm39)	Q419R	probably null	Het
Atad2	A	T	15: 57,998,303 (GRCm39)	L23Q	probably damaging	Het
Btbd2	A	T	10: 80,492,045 (GRCm39)	F107Y	probably benign	Het
C7	T	A	15: 5,041,464 (GRCm39)	T481S	probably damaging	Het
Capn10	T	A	1: 92,867,111 (GRCm39)	W114R	probably damaging	Het
Ccdc121	C	T	5: 31,644,976 (GRCm39)	T243I	probably benign	Het
Cdc16	T	A	8: 13,809,153 (GRCm39)	D39E	possibly damaging	Het
Cfap74	A	T	4: 155,522,665 (GRCm39)	I684F		Het
Cyp2c70	T	A	19: 40,149,121 (GRCm39)	N342Y	possibly damaging	Het
Dnah17	G	A	11: 117,971,649 (GRCm39)	T2128I	possibly damaging	Het
Dnah5	A	G	15: 28,242,900 (GRCm39)	N545S	probably benign	Het
Dnmt3c	A	G	2: 153,561,914 (GRCm39)	N539S	probably damaging	Het
Elfn1	A	G	5: 139,958,964 (GRCm39)	E656G	possibly damaging	Het
F5	A	T	1: 164,021,730 (GRCm39)	I1402F	probably benign	Het
Fam186a	A	G	15: 99,840,973 (GRCm39)	L1757P	probably damaging	Het
Fbxo42	A	T	4: 140,895,171 (GRCm39)	R45W	probably damaging	Het
Fer1l5	T	C	1: 36,460,696 (GRCm39)	V1978A	probably benign	Het
Fpr1	T	A	17: 18,097,618 (GRCm39)	I124F	probably damaging	Het
Fry	A	T	5: 150,362,251 (GRCm39)	D2173V	possibly damaging	Het
Gabbr2	G	T	4: 46,815,684 (GRCm39)	T228K	possibly damaging	Het
Galnt9	A	T	5: 110,762,104 (GRCm39)	Y414F	probably damaging	Het
Gask1a	T	A	9: 121,794,170 (GRCm39)	L108Q	probably benign	Het
Ggt5	A	T	10: 75,444,635 (GRCm39)	M318L	probably benign	Het
Glod4	A	C	11: 76,125,292 (GRCm39)	S156A	probably benign	Het
Gm5431	A	T	11: 48,785,799 (GRCm39)	M192K	probably benign	Het
Golga5	C	T	12: 102,446,008 (GRCm39)	S421L	possibly damaging	Het
Gpr18	T	C	14: 122,149,992 (GRCm39)	D11G	probably benign	Het
Igf2bp3	C	T	6: 49,064,338 (GRCm39)	V560I	probably benign	Het
Igfals	A	G	17: 25,099,665 (GRCm39)	N252S	probably damaging	Het
Ighv8-5	C	T	12: 115,031,416 (GRCm39)	C41Y	probably damaging	Het
Iqgap3	T	A	3: 88,016,728 (GRCm39)	V1070D	possibly damaging	Het
Kdr	G	A	5: 76,122,488 (GRCm39)	A479V	probably benign	Het
Kidins220	T	C	12: 25,047,295 (GRCm39)	L247P	probably damaging	Het
Kmt5a	A	G	5: 124,589,393 (GRCm39)	Y197C	probably damaging	Het
Krt33a	A	C	11: 99,906,624 (GRCm39)		probably null	Het
Mageb3	A	G	2: 121,785,649 (GRCm39)	S18P	unknown	Het
Mast1	T	A	8: 85,650,660 (GRCm39)	Y387F	probably damaging	Het
Mcm5	C	T	8: 75,844,168 (GRCm39)	S313F	probably benign	Het
Med17	C	T	9: 15,176,719 (GRCm39)	V503M	possibly damaging	Het
Mpp3	A	G	11: 101,899,481 (GRCm39)	C347R	probably benign	Het
Mtr	A	G	13: 12,203,030 (GRCm39)	L1191P	probably damaging	Het
Mybphl	A	T	3: 108,282,099 (GRCm39)	I110F	probably damaging	Het
Nkx2-1	T	A	12: 56,581,802 (GRCm39)	D15V	probably damaging	Het
Nwd2	G	A	5: 63,964,568 (GRCm39)	W1384*	probably null	Het
Onecut1	A	G	9: 74,770,330 (GRCm39)	H251R	possibly damaging	Het
Or10ak8	T	A	4: 118,773,804 (GRCm39)	N287Y	probably damaging	Het
Or13f5	C	T	4: 52,825,526 (GRCm39)	T43I	probably benign	Het
Or51a6	A	G	7: 102,604,319 (GRCm39)	F163S	probably damaging	Het
Or8b37	A	T	9: 37,959,387 (GRCm39)	I290L	probably benign	Het
Palmd	T	C	3: 116,716,840 (GRCm39)	*552W	probably null	Het
Pcdhgb2	A	G	18: 37,823,285 (GRCm39)	E92G	probably damaging	Het
Pcdhgb5	G	T	18: 37,865,122 (GRCm39)	E306*	probably null	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Pex1	T	A	5: 3,655,653 (GRCm39)	L160Q	probably damaging	Het
Phxr2	A	T	10: 98,961,974 (GRCm39)	S29T	unknown	Het
Ppargc1a	A	G	5: 51,705,852 (GRCm39)		probably null	Het
Psmb11	T	C	14: 54,862,965 (GRCm39)	V61A	probably damaging	Het
Ripor2	A	T	13: 24,908,983 (GRCm39)	I1034F	possibly damaging	Het
Rnaset2b	T	A	17: 7,259,134 (GRCm39)	N133K	probably damaging	Het
Rtn4	A	G	11: 29,657,504 (GRCm39)	T553A	probably damaging	Het
Samd9l	T	A	6: 3,373,578 (GRCm39)	T1228S	probably benign	Het
Sdr42e2	A	G	7: 120,430,279 (GRCm39)	T379A	probably benign	Het
Shisal2a	C	A	4: 108,234,616 (GRCm39)	V84L	possibly damaging	Het
Slc1a1	C	T	19: 28,870,283 (GRCm39)	A94V	probably damaging	Het
Snx31	C	T	15: 36,534,582 (GRCm39)	C197Y	probably damaging	Het
Tbc1d4	A	G	14: 101,744,567 (GRCm39)	V353A	probably damaging	Het
Tbc1d9b	A	G	11: 50,059,610 (GRCm39)	D1004G	possibly damaging	Het
Tex15	T	A	8: 34,066,784 (GRCm39)	Y2071*	probably null	Het
Tnni3k	G	A	3: 154,645,410 (GRCm39)	R492*	probably null	Het
Tns2	A	G	15: 102,012,933 (GRCm39)	H7R	probably benign	Het
Top2a	G	T	11: 98,905,334 (GRCm39)	N369K	probably damaging	Het
Tpbg	A	T	9: 85,726,252 (GRCm39)	T74S	probably damaging	Het
Trpm6	A	G	19: 18,869,466 (GRCm39)	N2018D	probably benign	Het
Trub2	A	T	2: 29,669,833 (GRCm39)		probably null	Het
Vps13d	A	G	4: 144,813,305 (GRCm39)	F3324L		Het
Wdr20rt	A	T	12: 65,273,707 (GRCm39)	Q390L	probably benign	Het
Wdr49	T	A	3: 75,240,561 (GRCm39)	D436V	probably damaging	Het
Zfp111	C	T	7: 23,898,543 (GRCm39)	G357D	probably damaging	Het
Zfp668	A	G	7: 127,466,113 (GRCm39)	V357A	possibly damaging	Het

Other mutations in Exd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01295:Exd1	APN	2	119,360,560 (GRCm39)	splice site	probably benign
IGL02032:Exd1	APN	2	119,363,948 (GRCm39)	missense	probably damaging	1.00
IGL02040:Exd1	APN	2	119,370,546 (GRCm39)	missense	possibly damaging	0.79
IGL02831:Exd1	APN	2	119,359,235 (GRCm39)	missense	probably damaging	1.00
IGL03008:Exd1	APN	2	119,350,862 (GRCm39)	missense	probably benign	0.01
R0350:Exd1	UTSW	2	119,354,047 (GRCm39)	missense	possibly damaging	0.64
R1423:Exd1	UTSW	2	119,370,494 (GRCm39)	splice site	probably benign
R1466:Exd1	UTSW	2	119,351,215 (GRCm39)	splice site	probably benign
R1524:Exd1	UTSW	2	119,355,155 (GRCm39)	missense	probably damaging	0.98
R2011:Exd1	UTSW	2	119,359,144 (GRCm39)	intron	probably benign
R2026:Exd1	UTSW	2	119,350,786 (GRCm39)	missense	probably benign
R4711:Exd1	UTSW	2	119,369,232 (GRCm39)	missense	possibly damaging	0.91
R4827:Exd1	UTSW	2	119,350,807 (GRCm39)	missense	probably benign
R4828:Exd1	UTSW	2	119,350,807 (GRCm39)	missense	probably benign
R4829:Exd1	UTSW	2	119,350,807 (GRCm39)	missense	probably benign
R4830:Exd1	UTSW	2	119,350,807 (GRCm39)	missense	probably benign
R5799:Exd1	UTSW	2	119,369,262 (GRCm39)	missense	probably benign	0.01
R6570:Exd1	UTSW	2	119,350,654 (GRCm39)	missense	probably benign
R6654:Exd1	UTSW	2	119,355,198 (GRCm39)	critical splice acceptor site	probably null
R6907:Exd1	UTSW	2	119,363,957 (GRCm39)	missense	probably damaging	1.00
R7325:Exd1	UTSW	2	119,350,620 (GRCm39)	missense	probably benign	0.28
R7684:Exd1	UTSW	2	119,350,684 (GRCm39)	missense	probably damaging	1.00
R7921:Exd1	UTSW	2	119,360,580 (GRCm39)	missense	probably damaging	0.99
R8029:Exd1	UTSW	2	119,359,204 (GRCm39)	missense	probably damaging	1.00
R8428:Exd1	UTSW	2	119,369,348 (GRCm39)	missense	possibly damaging	0.80
R8516:Exd1	UTSW	2	119,350,554 (GRCm39)	missense	probably damaging	0.97
R9136:Exd1	UTSW	2	119,359,385 (GRCm39)	missense	probably damaging	1.00
R9390:Exd1	UTSW	2	119,354,180 (GRCm39)	missense	probably damaging	1.00
R9451:Exd1	UTSW	2	119,355,064 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- AAGGTGTCAGTTGGTGCCTC -3'
(R):5'- CCTCATAAGGACTCCACTGC -3'

Sequencing Primer
(F):5'- AGTTGGTGCCTCCCAGGTTTC -3'
(R):5'- GAGCGAGTCCAGGGTTTC -3'

Posted On

2022-11-14