Incidental Mutation 'IGL01316:Secisbp2'
ID73841
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Secisbp2
Ensembl Gene ENSMUSG00000035139
Gene NameSECIS binding protein 2
SynonymsSBP2, 2210413N07Rik, 2810012K13Rik
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.188) question?
Stock #IGL01316
Quality Score
Status
Chromosome13
Chromosomal Location51651697-51684044 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 51654516 bp
ZygosityHeterozygous
Amino Acid Change Serine to Proline at position 106 (S106P)
Ref Sequence ENSEMBL: ENSMUSP00000105671 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040117] [ENSMUST00000075853] [ENSMUST00000110044]
Predicted Effect probably benign
Transcript: ENSMUST00000040117
AA Change: S106P

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000045740
Gene: ENSMUSG00000035139
AA Change: S106P

DomainStartEndE-ValueType
low complexity region 179 192 N/A INTRINSIC
low complexity region 375 389 N/A INTRINSIC
low complexity region 542 553 N/A INTRINSIC
Pfam:Ribosomal_L7Ae 662 764 4.4e-23 PFAM
low complexity region 793 809 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000075853
SMART Domains Protein: ENSMUSP00000075250
Gene: ENSMUSG00000062248

DomainStartEndE-ValueType
CKS 5 74 2.41e-45 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000110044
AA Change: S106P

PolyPhen 2 Score 0.065 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000105671
Gene: ENSMUSG00000035139
AA Change: S106P

DomainStartEndE-ValueType
low complexity region 179 192 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127360
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154202
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: The incorporation of selenocysteine into a protein requires the concerted action of an mRNA element called a sec insertion sequence (SECIS), a selenocysteine-specific translation elongation factor and a SECIS binding protein. With these elements in place, a UGA codon can be decoded as selenocysteine. The gene described in this record encodes a nuclear protein that functions as a SECIS binding protein. Mutations in a similar gene in human have been associated with a reduction in activity of a specific thyroxine deiodinase, a selenocysteine-containing enzyme, and abnormal thyroid hormone metabolism. Alternate splicing results in multiple transcript variants. [provided by RefSeq, May 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit complete preweaning lethality while heterozygotes exhibit reduced serum selenium levels. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 31 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca4 T C 3: 122,141,755 V326A probably damaging Het
Aldh1l1 A G 6: 90,598,380 D883G probably damaging Het
Ankk1 A G 9: 49,420,484 probably benign Het
Cacna1s T C 1: 136,118,964 V1796A probably benign Het
Ccdc186 A C 19: 56,813,413 C91G probably benign Het
Clec5a T C 6: 40,582,262 T63A probably benign Het
Cyp3a11 T A 5: 145,855,151 K477N possibly damaging Het
Dram2 T A 3: 106,572,980 V116E possibly damaging Het
Dram2 T C 3: 106,571,634 Y181H probably benign Het
Eps15l1 A T 8: 72,389,414 F184L possibly damaging Het
Greb1 T A 12: 16,698,586 H1102L probably benign Het
Inpp5f G A 7: 128,690,706 probably benign Het
Kcng1 T C 2: 168,269,040 N68S probably damaging Het
Klhl41 A G 2: 69,674,724 D457G probably benign Het
Krt2 T C 15: 101,811,211 R675G probably benign Het
Med13l T A 5: 118,762,781 V2200D probably damaging Het
Mme T A 3: 63,340,159 probably benign Het
Nexn A T 3: 152,247,233 F283L probably benign Het
Noxa1 T C 2: 25,086,011 D389G probably benign Het
Olfr135 A G 17: 38,208,497 N84S probably damaging Het
Olfr836 A G 9: 19,121,422 I156V probably benign Het
Parp1 A G 1: 180,592,935 probably benign Het
Pirt T C 11: 66,925,946 S28P probably damaging Het
Ros1 A G 10: 52,087,879 probably null Het
Sdk2 T C 11: 113,867,965 T478A probably benign Het
Shroom1 C T 11: 53,465,558 A416V probably damaging Het
Ski C T 4: 155,221,686 A279T probably damaging Het
Stxbp4 A G 11: 90,621,649 probably benign Het
Tab2 A G 10: 7,924,704 V28A probably damaging Het
Tmem126a G A 7: 90,452,719 P91S probably damaging Het
Ucma T C 2: 4,981,231 probably benign Het
Other mutations in Secisbp2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01149:Secisbp2 APN 13 51676455 critical splice donor site probably null
IGL02576:Secisbp2 APN 13 51670858 missense possibly damaging 0.80
IGL02630:Secisbp2 APN 13 51678906 missense possibly damaging 0.63
IGL02645:Secisbp2 APN 13 51682460 missense probably damaging 1.00
IGL03107:Secisbp2 APN 13 51652757 critical splice donor site probably null
R0208:Secisbp2 UTSW 13 51679845 missense probably benign 0.26
R0453:Secisbp2 UTSW 13 51683325 missense possibly damaging 0.91
R1220:Secisbp2 UTSW 13 51656905 missense probably damaging 1.00
R1278:Secisbp2 UTSW 13 51654510 missense probably damaging 1.00
R1439:Secisbp2 UTSW 13 51679723 splice site probably benign
R1514:Secisbp2 UTSW 13 51682095 missense possibly damaging 0.83
R1568:Secisbp2 UTSW 13 51673107 missense possibly damaging 0.73
R1724:Secisbp2 UTSW 13 51670846 missense probably benign
R2851:Secisbp2 UTSW 13 51654635 splice site probably null
R2967:Secisbp2 UTSW 13 51670879 missense probably benign 0.00
R3156:Secisbp2 UTSW 13 51662675 missense probably benign 0.06
R4393:Secisbp2 UTSW 13 51654466 missense probably damaging 1.00
R4719:Secisbp2 UTSW 13 51652732 missense possibly damaging 0.96
R4953:Secisbp2 UTSW 13 51682027 missense probably damaging 1.00
R5183:Secisbp2 UTSW 13 51665424 missense probably benign 0.14
R5432:Secisbp2 UTSW 13 51673966 small deletion probably benign
R5696:Secisbp2 UTSW 13 51679821 missense probably damaging 1.00
R6007:Secisbp2 UTSW 13 51665359 missense probably damaging 0.99
R6066:Secisbp2 UTSW 13 51677222 missense probably benign 0.00
R6076:Secisbp2 UTSW 13 51679777 missense probably damaging 0.98
R6164:Secisbp2 UTSW 13 51679860 missense probably damaging 1.00
R6346:Secisbp2 UTSW 13 51679887 missense probably damaging 0.99
R6367:Secisbp2 UTSW 13 51682141 missense probably damaging 1.00
R6790:Secisbp2 UTSW 13 51670903 missense probably benign 0.09
R6888:Secisbp2 UTSW 13 51679941 missense probably benign 0.16
R7095:Secisbp2 UTSW 13 51677254 missense probably benign 0.01
R7104:Secisbp2 UTSW 13 51656907 nonsense probably null
R7261:Secisbp2 UTSW 13 51682462 missense probably damaging 1.00
R7717:Secisbp2 UTSW 13 51673098 missense probably benign 0.00
R8021:Secisbp2 UTSW 13 51665628 makesense not run
Posted On2013-10-07