Incidental Mutation 'IGL01316:Clec5a'
| ID |
73850 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Clec5a
|
| Ensembl Gene |
ENSMUSG00000029915 |
| Gene Name |
C-type lectin domain family 5, member a |
| Synonyms |
Ly100, myeloid DAP12-associating lectin-1, Clecsf5, MDL-1 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.057)
|
| Stock # |
IGL01316
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
6 |
| Chromosomal Location |
40551832-40562739 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 40559196 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 63
(T63A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000121848
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000101491]
[ENSMUST00000129948]
[ENSMUST00000177178]
|
| AlphaFold |
Q9R007 |
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000031975
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000101491
AA Change: T38A
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000099030
Gene: ENSMUSG00000029915
AA Change: T38A
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
5 |
27 |
N/A |
INTRINSIC |
|
CLECT
|
48 |
161 |
3.83e-21 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129948
AA Change: T63A
PolyPhen 2
Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
|
| SMART Domains |
Protein: ENSMUSP00000121848
Gene: ENSMUSG00000029915
AA Change: T63A
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
5 |
27 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
29 |
51 |
5.12e-5 |
PROSPERO |
|
CLECT
|
73 |
186 |
3.83e-21 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000177178
AA Change: T38A
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000135240
Gene: ENSMUSG00000029915
AA Change: T38A
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
5 |
27 |
N/A |
INTRINSIC |
|
CLECT
|
48 |
160 |
9.02e-18 |
SMART |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. The encoded type II transmembrane protein interacts with dnax-activation protein 12 and may play a role in cell activation. Alternative splice variants have been described but their full-length sequence has not been determined. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased susceptibility to induced arthritis. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 31 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca4 |
T |
C |
3: 121,935,404 (GRCm39) |
V326A |
probably damaging |
Het |
| Aldh1l1 |
A |
G |
6: 90,575,362 (GRCm39) |
D883G |
probably damaging |
Het |
| Ankk1 |
A |
G |
9: 49,331,784 (GRCm39) |
|
probably benign |
Het |
| Cacna1s |
T |
C |
1: 136,046,702 (GRCm39) |
V1796A |
probably benign |
Het |
| Ccdc186 |
A |
C |
19: 56,801,845 (GRCm39) |
C91G |
probably benign |
Het |
| Cyp3a11 |
T |
A |
5: 145,791,961 (GRCm39) |
K477N |
possibly damaging |
Het |
| Dram2 |
T |
A |
3: 106,480,296 (GRCm39) |
V116E |
possibly damaging |
Het |
| Dram2 |
T |
C |
3: 106,478,950 (GRCm39) |
Y181H |
probably benign |
Het |
| Eps15l1 |
A |
T |
8: 73,143,258 (GRCm39) |
F184L |
possibly damaging |
Het |
| Greb1 |
T |
A |
12: 16,748,587 (GRCm39) |
H1102L |
probably benign |
Het |
| Inpp5f |
G |
A |
7: 128,292,430 (GRCm39) |
|
probably benign |
Het |
| Kcng1 |
T |
C |
2: 168,110,960 (GRCm39) |
N68S |
probably damaging |
Het |
| Klhl41 |
A |
G |
2: 69,505,068 (GRCm39) |
D457G |
probably benign |
Het |
| Krt1c |
T |
C |
15: 101,719,646 (GRCm39) |
R675G |
probably benign |
Het |
| Med13l |
T |
A |
5: 118,900,846 (GRCm39) |
V2200D |
probably damaging |
Het |
| Mme |
T |
A |
3: 63,247,580 (GRCm39) |
|
probably benign |
Het |
| Nexn |
A |
T |
3: 151,952,870 (GRCm39) |
F283L |
probably benign |
Het |
| Noxa1 |
T |
C |
2: 24,976,023 (GRCm39) |
D389G |
probably benign |
Het |
| Or2n1c |
A |
G |
17: 38,519,388 (GRCm39) |
N84S |
probably damaging |
Het |
| Or7g21 |
A |
G |
9: 19,032,718 (GRCm39) |
I156V |
probably benign |
Het |
| Parp1 |
A |
G |
1: 180,420,500 (GRCm39) |
|
probably benign |
Het |
| Pirt |
T |
C |
11: 66,816,772 (GRCm39) |
S28P |
probably damaging |
Het |
| Ros1 |
A |
G |
10: 51,963,975 (GRCm39) |
|
probably null |
Het |
| Sdk2 |
T |
C |
11: 113,758,791 (GRCm39) |
T478A |
probably benign |
Het |
| Secisbp2 |
T |
C |
13: 51,808,552 (GRCm39) |
S106P |
probably benign |
Het |
| Shroom1 |
C |
T |
11: 53,356,385 (GRCm39) |
A416V |
probably damaging |
Het |
| Ski |
C |
T |
4: 155,306,143 (GRCm39) |
A279T |
probably damaging |
Het |
| Stxbp4 |
A |
G |
11: 90,512,475 (GRCm39) |
|
probably benign |
Het |
| Tab2 |
A |
G |
10: 7,800,468 (GRCm39) |
V28A |
probably damaging |
Het |
| Tmem126a |
G |
A |
7: 90,101,927 (GRCm39) |
P91S |
probably damaging |
Het |
| Ucma |
T |
C |
2: 4,986,042 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Clec5a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01680:Clec5a
|
APN |
6 |
40,561,314 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01701:Clec5a
|
APN |
6 |
40,559,160 (GRCm39) |
splice site |
probably benign |
|
|
IGL02281:Clec5a
|
APN |
6 |
40,561,336 (GRCm39) |
missense |
probably benign |
0.04 |
|
IGL02799:Clec5a
|
UTSW |
6 |
40,554,983 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1435:Clec5a
|
UTSW |
6 |
40,561,358 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1580:Clec5a
|
UTSW |
6 |
40,562,153 (GRCm39) |
missense |
probably benign |
0.08 |
|
R1752:Clec5a
|
UTSW |
6 |
40,559,187 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1898:Clec5a
|
UTSW |
6 |
40,558,870 (GRCm39) |
missense |
probably benign |
0.03 |
|
R2022:Clec5a
|
UTSW |
6 |
40,562,128 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2110:Clec5a
|
UTSW |
6 |
40,562,137 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4915:Clec5a
|
UTSW |
6 |
40,562,165 (GRCm39) |
utr 5 prime |
probably benign |
|
|
R5697:Clec5a
|
UTSW |
6 |
40,559,204 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5906:Clec5a
|
UTSW |
6 |
40,558,793 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7811:Clec5a
|
UTSW |
6 |
40,558,867 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8113:Clec5a
|
UTSW |
6 |
40,556,361 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
| Posted On |
2013-10-07 |
Incidental Mutation