Incidental Mutation 'IGL01322:Smc2'
ID |
74101 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Smc2
|
Ensembl Gene |
ENSMUSG00000028312 |
Gene Name |
structural maintenance of chromosomes 2 |
Synonyms |
5730502P04Rik, CAP-E, Fin16, Smc2l1 |
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.959)
|
Stock # |
IGL01322
|
Quality Score |
|
Status
|
|
Chromosome |
4 |
Chromosomal Location |
52439243-52488260 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 52450842 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Cysteine
at position 220
(Y220C)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000114228
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000102915]
[ENSMUST00000117280]
[ENSMUST00000142227]
|
AlphaFold |
Q8CG48 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000102915
AA Change: Y220C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000099979 Gene: ENSMUSG00000028312 AA Change: Y220C
Domain | Start | End | E-Value | Type |
internal_repeat_1
|
146 |
174 |
2.4e-6 |
PROSPERO |
low complexity region
|
183 |
207 |
N/A |
INTRINSIC |
coiled coil region
|
238 |
355 |
N/A |
INTRINSIC |
coiled coil region
|
400 |
503 |
N/A |
INTRINSIC |
SMC_hinge
|
520 |
640 |
3.8e-34 |
SMART |
coiled coil region
|
676 |
880 |
N/A |
INTRINSIC |
coiled coil region
|
984 |
1031 |
N/A |
INTRINSIC |
PDB:4I99|B
|
1034 |
1186 |
3e-15 |
PDB |
SCOP:d1e69a_
|
1066 |
1144 |
2e-7 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000117280
AA Change: Y220C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000113940 Gene: ENSMUSG00000028312 AA Change: Y220C
Domain | Start | End | E-Value | Type |
Pfam:AAA_21
|
27 |
131 |
3.8e-6 |
PFAM |
internal_repeat_1
|
146 |
174 |
2.4e-6 |
PROSPERO |
low complexity region
|
183 |
207 |
N/A |
INTRINSIC |
coiled coil region
|
238 |
355 |
N/A |
INTRINSIC |
coiled coil region
|
400 |
503 |
N/A |
INTRINSIC |
SMC_hinge
|
520 |
640 |
3.8e-34 |
SMART |
coiled coil region
|
676 |
880 |
N/A |
INTRINSIC |
coiled coil region
|
984 |
1031 |
N/A |
INTRINSIC |
PDB:4I99|B
|
1034 |
1186 |
3e-15 |
PDB |
SCOP:d1e69a_
|
1066 |
1144 |
2e-7 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131163
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000142227
AA Change: Y220C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000114228 Gene: ENSMUSG00000028312 AA Change: Y220C
Domain | Start | End | E-Value | Type |
Pfam:SMC_N
|
2 |
351 |
2.3e-36 |
PFAM |
Pfam:AAA_21
|
27 |
131 |
1.7e-8 |
PFAM |
coiled coil region
|
400 |
471 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146787
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: The protein encoded by this gene is a component of both condensin I and condensin II complexes, and forms a heterodimer with structural maintenance of chromosome 4 (Smc4). This heterodimer is the catalytic subunit for both condensin complexes, and is involved in several processes, including chromosome condensation during mitosis and meiosis, cohesin removal during mitosis and meiosis, and single-strand break (SSB) repair. Reduced expression of this gene results in chromosome segregation defects during mitosis and meiosis, with a more severe defect observed in embryonic stem cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014] PHENOTYPE: Homozygous null mice die embryonically. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 45 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca16 |
T |
A |
7: 120,038,422 (GRCm39) |
L368Q |
probably damaging |
Het |
Abca2 |
T |
A |
2: 25,336,794 (GRCm39) |
|
probably null |
Het |
Ano7 |
T |
A |
1: 93,323,230 (GRCm39) |
V497D |
probably benign |
Het |
B4gat1 |
T |
C |
19: 5,090,037 (GRCm39) |
Y345H |
probably damaging |
Het |
Bckdha |
T |
A |
7: 25,358,132 (GRCm39) |
R12W |
possibly damaging |
Het |
Bcl7c |
T |
A |
7: 127,306,608 (GRCm39) |
N93Y |
probably damaging |
Het |
Cc2d2a |
C |
A |
5: 43,846,345 (GRCm39) |
T368K |
probably benign |
Het |
Chek1 |
G |
A |
9: 36,629,717 (GRCm39) |
Q210* |
probably null |
Het |
Chrdl2 |
A |
G |
7: 99,666,248 (GRCm39) |
Y56C |
probably damaging |
Het |
Cspg4 |
T |
A |
9: 56,805,872 (GRCm39) |
F2228I |
probably damaging |
Het |
Dnah7a |
T |
C |
1: 53,473,205 (GRCm39) |
M3474V |
probably benign |
Het |
Dph7 |
T |
C |
2: 24,855,629 (GRCm39) |
S143P |
possibly damaging |
Het |
Ehbp1 |
T |
A |
11: 22,039,636 (GRCm39) |
K821N |
probably damaging |
Het |
Eomes |
T |
C |
9: 118,313,898 (GRCm39) |
S648P |
probably benign |
Het |
Fam20a |
A |
G |
11: 109,573,738 (GRCm39) |
V215A |
probably damaging |
Het |
Fer1l4 |
T |
A |
2: 155,862,259 (GRCm39) |
|
probably null |
Het |
Frem2 |
A |
G |
3: 53,448,459 (GRCm39) |
V2319A |
probably benign |
Het |
Gtf3c4 |
T |
C |
2: 28,723,584 (GRCm39) |
D575G |
probably benign |
Het |
Ifit1bl2 |
A |
G |
19: 34,596,404 (GRCm39) |
V404A |
probably benign |
Het |
Kcnf1 |
T |
C |
12: 17,225,349 (GRCm39) |
M291V |
probably benign |
Het |
Klra1 |
T |
A |
6: 130,341,224 (GRCm39) |
I250F |
probably benign |
Het |
Klra4 |
T |
A |
6: 130,038,985 (GRCm39) |
T136S |
probably benign |
Het |
Mcrs1 |
A |
T |
15: 99,141,266 (GRCm39) |
I399N |
probably damaging |
Het |
Neo1 |
T |
C |
9: 58,814,368 (GRCm39) |
E866G |
possibly damaging |
Het |
Notch3 |
T |
C |
17: 32,363,445 (GRCm39) |
D1206G |
probably damaging |
Het |
Or10ab4 |
A |
G |
7: 107,654,188 (GRCm39) |
|
probably benign |
Het |
Or14c43 |
T |
A |
7: 86,115,480 (GRCm39) |
I287N |
probably damaging |
Het |
Or4z4 |
A |
C |
19: 12,076,769 (GRCm39) |
V78G |
probably benign |
Het |
Or5ae1 |
T |
A |
7: 84,565,590 (GRCm39) |
V201E |
probably damaging |
Het |
Or5b95 |
A |
C |
19: 12,658,113 (GRCm39) |
I214L |
probably benign |
Het |
Or6c210 |
A |
G |
10: 129,495,995 (GRCm39) |
T107A |
probably benign |
Het |
Pnkd |
A |
G |
1: 74,390,716 (GRCm39) |
N336D |
probably damaging |
Het |
Prag1 |
T |
C |
8: 36,571,088 (GRCm39) |
V557A |
probably benign |
Het |
Ptgfr |
A |
C |
3: 151,541,323 (GRCm39) |
S62A |
probably benign |
Het |
Sufu |
G |
A |
19: 46,439,382 (GRCm39) |
E246K |
probably damaging |
Het |
Sult2a1 |
T |
A |
7: 13,566,604 (GRCm39) |
R124* |
probably null |
Het |
Sult4a1 |
T |
A |
15: 83,970,817 (GRCm39) |
Y196F |
possibly damaging |
Het |
Trim15 |
G |
A |
17: 37,175,975 (GRCm39) |
R191W |
probably damaging |
Het |
Ttn |
A |
G |
2: 76,773,319 (GRCm39) |
V2361A |
possibly damaging |
Het |
Usp16 |
T |
C |
16: 87,263,164 (GRCm39) |
V122A |
possibly damaging |
Het |
Vmn1r122 |
T |
A |
7: 20,868,036 (GRCm39) |
K6N |
probably benign |
Het |
Vmn1r34 |
G |
A |
6: 66,613,899 (GRCm39) |
Q280* |
probably null |
Het |
Vmn2r45 |
T |
A |
7: 8,484,332 (GRCm39) |
H491L |
possibly damaging |
Het |
Wdpcp |
T |
C |
11: 21,661,949 (GRCm39) |
L407P |
probably damaging |
Het |
Zfp157 |
T |
C |
5: 138,445,840 (GRCm39) |
I65T |
probably benign |
Het |
|
Other mutations in Smc2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02045:Smc2
|
APN |
4 |
52,462,914 (GRCm39) |
missense |
probably benign |
0.01 |
IGL03013:Smc2
|
APN |
4 |
52,442,280 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03031:Smc2
|
APN |
4 |
52,449,638 (GRCm39) |
missense |
probably benign |
0.35 |
IGL03246:Smc2
|
APN |
4 |
52,440,301 (GRCm39) |
nonsense |
probably null |
|
Janitor
|
UTSW |
4 |
52,478,448 (GRCm39) |
missense |
probably damaging |
1.00 |
R0539:Smc2
|
UTSW |
4 |
52,458,558 (GRCm39) |
missense |
probably benign |
0.01 |
R0782:Smc2
|
UTSW |
4 |
52,469,799 (GRCm39) |
missense |
probably benign |
0.30 |
R1908:Smc2
|
UTSW |
4 |
52,450,863 (GRCm39) |
missense |
probably damaging |
0.97 |
R2054:Smc2
|
UTSW |
4 |
52,462,948 (GRCm39) |
missense |
probably benign |
0.00 |
R2109:Smc2
|
UTSW |
4 |
52,474,987 (GRCm39) |
missense |
probably benign |
0.00 |
R2318:Smc2
|
UTSW |
4 |
52,446,030 (GRCm39) |
missense |
probably damaging |
1.00 |
R2352:Smc2
|
UTSW |
4 |
52,460,266 (GRCm39) |
missense |
probably benign |
|
R3418:Smc2
|
UTSW |
4 |
52,476,850 (GRCm39) |
splice site |
probably benign |
|
R4003:Smc2
|
UTSW |
4 |
52,462,897 (GRCm39) |
missense |
probably damaging |
1.00 |
R4133:Smc2
|
UTSW |
4 |
52,450,947 (GRCm39) |
missense |
probably damaging |
0.99 |
R4299:Smc2
|
UTSW |
4 |
52,440,238 (GRCm39) |
utr 5 prime |
probably benign |
|
R4547:Smc2
|
UTSW |
4 |
52,467,866 (GRCm39) |
missense |
probably benign |
0.09 |
R4787:Smc2
|
UTSW |
4 |
52,462,927 (GRCm39) |
missense |
probably damaging |
0.98 |
R4816:Smc2
|
UTSW |
4 |
52,451,231 (GRCm39) |
missense |
probably benign |
0.00 |
R4829:Smc2
|
UTSW |
4 |
52,449,612 (GRCm39) |
missense |
probably damaging |
0.98 |
R4861:Smc2
|
UTSW |
4 |
52,461,090 (GRCm39) |
missense |
probably benign |
0.14 |
R4861:Smc2
|
UTSW |
4 |
52,461,090 (GRCm39) |
missense |
probably benign |
0.14 |
R4951:Smc2
|
UTSW |
4 |
52,462,926 (GRCm39) |
missense |
possibly damaging |
0.95 |
R4963:Smc2
|
UTSW |
4 |
52,450,826 (GRCm39) |
missense |
probably damaging |
1.00 |
R4996:Smc2
|
UTSW |
4 |
52,461,042 (GRCm39) |
splice site |
probably null |
|
R5028:Smc2
|
UTSW |
4 |
52,458,447 (GRCm39) |
missense |
probably damaging |
0.96 |
R5103:Smc2
|
UTSW |
4 |
52,459,033 (GRCm39) |
missense |
probably damaging |
1.00 |
R5159:Smc2
|
UTSW |
4 |
52,460,181 (GRCm39) |
missense |
possibly damaging |
0.65 |
R5387:Smc2
|
UTSW |
4 |
52,475,096 (GRCm39) |
missense |
probably benign |
0.16 |
R5697:Smc2
|
UTSW |
4 |
52,459,045 (GRCm39) |
missense |
probably benign |
0.01 |
R6006:Smc2
|
UTSW |
4 |
52,459,024 (GRCm39) |
missense |
probably benign |
|
R6246:Smc2
|
UTSW |
4 |
52,460,289 (GRCm39) |
missense |
probably damaging |
1.00 |
R6321:Smc2
|
UTSW |
4 |
52,462,814 (GRCm39) |
missense |
probably benign |
|
R6590:Smc2
|
UTSW |
4 |
52,449,375 (GRCm39) |
missense |
probably benign |
0.01 |
R6658:Smc2
|
UTSW |
4 |
52,451,322 (GRCm39) |
missense |
probably benign |
0.21 |
R6690:Smc2
|
UTSW |
4 |
52,449,375 (GRCm39) |
missense |
probably benign |
0.01 |
R7422:Smc2
|
UTSW |
4 |
52,440,301 (GRCm39) |
missense |
probably benign |
0.02 |
R7486:Smc2
|
UTSW |
4 |
52,462,861 (GRCm39) |
missense |
possibly damaging |
0.54 |
R7487:Smc2
|
UTSW |
4 |
52,478,448 (GRCm39) |
missense |
probably damaging |
1.00 |
R7532:Smc2
|
UTSW |
4 |
52,451,013 (GRCm39) |
missense |
probably damaging |
1.00 |
R7556:Smc2
|
UTSW |
4 |
52,457,379 (GRCm39) |
missense |
probably benign |
0.03 |
R7912:Smc2
|
UTSW |
4 |
52,450,854 (GRCm39) |
missense |
probably benign |
0.00 |
R7953:Smc2
|
UTSW |
4 |
52,470,911 (GRCm39) |
critical splice donor site |
probably null |
|
R7979:Smc2
|
UTSW |
4 |
52,450,857 (GRCm39) |
missense |
probably damaging |
1.00 |
R8343:Smc2
|
UTSW |
4 |
52,450,965 (GRCm39) |
missense |
probably benign |
|
R8344:Smc2
|
UTSW |
4 |
52,449,376 (GRCm39) |
missense |
probably benign |
0.01 |
R8495:Smc2
|
UTSW |
4 |
52,450,992 (GRCm39) |
missense |
probably benign |
0.00 |
R8880:Smc2
|
UTSW |
4 |
52,462,856 (GRCm39) |
missense |
probably benign |
0.00 |
R8988:Smc2
|
UTSW |
4 |
52,475,100 (GRCm39) |
missense |
probably benign |
|
R9201:Smc2
|
UTSW |
4 |
52,446,044 (GRCm39) |
missense |
probably damaging |
1.00 |
R9263:Smc2
|
UTSW |
4 |
52,470,848 (GRCm39) |
missense |
possibly damaging |
0.89 |
R9287:Smc2
|
UTSW |
4 |
52,449,361 (GRCm39) |
missense |
probably damaging |
1.00 |
R9534:Smc2
|
UTSW |
4 |
52,462,870 (GRCm39) |
missense |
probably damaging |
1.00 |
RF006:Smc2
|
UTSW |
4 |
52,442,276 (GRCm39) |
missense |
probably benign |
0.03 |
X0065:Smc2
|
UTSW |
4 |
52,440,370 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Smc2
|
UTSW |
4 |
52,481,682 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2013-10-07 |