Incidental Mutation 'IGL01339:Rdh13'
ID 74772
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Rdh13
Ensembl Gene ENSMUSG00000008435
Gene Name retinol dehydrogenase 13 (all-trans and 9-cis)
Synonyms 8430425D21Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.187) question?
Stock # IGL01339
Quality Score
Status
Chromosome 7
Chromosomal Location 4427769-4448648 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 4430623 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Arginine at position 278 (S278R)
Ref Sequence ENSEMBL: ENSMUSP00000113433 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000008579] [ENSMUST00000119485]
AlphaFold Q8CEE7
Predicted Effect probably damaging
Transcript: ENSMUST00000008579
AA Change: S313R

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000008579
Gene: ENSMUSG00000008435
AA Change: S313R

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
Pfam:KR 39 204 1.3e-7 PFAM
Pfam:adh_short 39 245 1.4e-37 PFAM
Pfam:Epimerase 41 231 1.4e-7 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000119485
AA Change: S278R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000113433
Gene: ENSMUSG00000008435
AA Change: S278R

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
Pfam:adh_short 39 115 7.8e-10 PFAM
low complexity region 117 126 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a mitochondrial short-chain dehydrogenase/reductase, which catalyzes the reduction and oxidation of retinoids. The encoded enzyme may function in retinoic acid production and may also protect the mitochondria against oxidative stress. Alternatively spliced transcript variants have been described. [provided by RefSeq, Mar 2009]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit disintegration of the outer-plus-inner-segment and outer nuclear layers, reduced amplitudes of a- and b-waves under scotopic conditions and swollen mitochondria in the inner segment following exposure to intense light. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Bahcc1 A G 11: 120,180,338 (GRCm39) T2565A probably damaging Het
C8a A C 4: 104,685,182 (GRCm39) F354V probably benign Het
Cadps C T 14: 12,486,543 (GRCm38) V876M possibly damaging Het
Chmp7 A T 14: 69,956,855 (GRCm39) I351N probably damaging Het
Clec7a A T 6: 129,442,449 (GRCm39) W193R probably damaging Het
Clint1 T C 11: 45,799,846 (GRCm39) V535A probably benign Het
Clu A G 14: 66,213,037 (GRCm39) E141G probably damaging Het
Cmah A T 13: 24,614,532 (GRCm39) D159V probably damaging Het
Cntn2 A T 1: 132,446,643 (GRCm39) probably null Het
Cox6a1 C A 5: 115,483,898 (GRCm39) probably benign Het
Cyp2d10 C T 15: 82,288,042 (GRCm39) A195T probably benign Het
Dnah10 G T 5: 124,854,276 (GRCm39) K1901N probably damaging Het
Dnai3 T C 3: 145,748,591 (GRCm39) Y841C probably benign Het
Dop1a G A 9: 86,433,730 (GRCm39) D2329N possibly damaging Het
Eipr1 A G 12: 28,914,770 (GRCm39) E308G probably damaging Het
Exoc4 T C 6: 33,282,335 (GRCm39) probably benign Het
Fancd2 A G 6: 113,530,713 (GRCm39) I449V probably benign Het
Fbn2 T C 18: 58,246,442 (GRCm39) T487A possibly damaging Het
Fbxo40 T C 16: 36,790,816 (GRCm39) E98G probably damaging Het
Folh1 G A 7: 86,375,306 (GRCm39) T527I probably damaging Het
Gls C T 1: 52,227,867 (GRCm39) D217N probably damaging Het
Gm6994 A G 14: 77,718,618 (GRCm39) probably benign Het
Gpr149 A T 3: 62,511,718 (GRCm39) W94R probably damaging Het
Gpr158 A G 2: 21,373,842 (GRCm39) D259G possibly damaging Het
Hcn2 T C 10: 79,564,902 (GRCm39) L438P probably damaging Het
Hgd A C 16: 37,452,092 (GRCm39) T374P possibly damaging Het
Ints3 A G 3: 90,322,463 (GRCm39) probably null Het
Kctd5 A T 17: 24,276,749 (GRCm39) V172E probably damaging Het
Lmcd1 A G 6: 112,287,586 (GRCm39) I91V probably benign Het
Lrrc37a A G 11: 103,388,763 (GRCm39) S2221P unknown Het
Ltk T A 2: 119,583,455 (GRCm39) D310V probably damaging Het
Luzp1 T A 4: 136,270,087 (GRCm39) M770K probably damaging Het
Mxd4 G A 5: 34,341,690 (GRCm39) probably benign Het
Mzb1 T A 18: 35,781,399 (GRCm39) H71L probably benign Het
Necap2 G A 4: 140,802,276 (GRCm39) T63I probably benign Het
Nefl A G 14: 68,323,931 (GRCm39) probably benign Het
Odam G A 5: 88,033,755 (GRCm39) probably null Het
Pcdh18 A G 3: 49,710,247 (GRCm39) I356T probably benign Het
Pcx T A 19: 4,670,263 (GRCm39) probably null Het
Pde2a T C 7: 101,156,366 (GRCm39) S593P probably benign Het
Rapgef3 A T 15: 97,655,940 (GRCm39) L359M probably damaging Het
Rb1 T C 14: 73,501,811 (GRCm39) probably null Het
Rbm44 A G 1: 91,096,686 (GRCm39) I976V probably benign Het
Rgma A G 7: 73,067,231 (GRCm39) E256G probably damaging Het
Rnf112 A T 11: 61,341,303 (GRCm39) D402E probably benign Het
Rnps1 T A 17: 24,641,273 (GRCm39) D224E probably damaging Het
Scn10a C T 9: 119,451,832 (GRCm39) V1364M probably damaging Het
Scn1a C T 2: 66,156,304 (GRCm39) R535H probably benign Het
Scn8a A T 15: 100,930,082 (GRCm39) D1431V probably benign Het
Setdb1 A T 3: 95,245,891 (GRCm39) L677* probably null Het
Slc17a8 T A 10: 89,427,106 (GRCm39) I148F probably damaging Het
Slx4ip T A 2: 136,885,975 (GRCm39) C98* probably null Het
Sptbn2 T G 19: 4,796,000 (GRCm39) Y1726* probably null Het
Tcof1 T C 18: 60,951,167 (GRCm39) probably benign Het
Tdrd3 G A 14: 87,718,230 (GRCm39) V210I possibly damaging Het
Tdrd9 G A 12: 112,006,868 (GRCm39) V911M probably damaging Het
Tmod4 G A 3: 95,035,608 (GRCm39) R252H probably benign Het
Tti1 G T 2: 157,851,050 (GRCm39) P63Q possibly damaging Het
Tuft1 A T 3: 94,535,594 (GRCm39) D109E probably damaging Het
Zcchc2 T C 1: 105,957,505 (GRCm39) S659P probably damaging Het
Other mutations in Rdh13
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01122:Rdh13 APN 7 4,445,694 (GRCm39) missense probably benign 0.00
IGL01778:Rdh13 APN 7 4,433,388 (GRCm39) splice site probably null
IGL02269:Rdh13 APN 7 4,448,497 (GRCm39) missense possibly damaging 0.95
IGL02749:Rdh13 APN 7 4,430,703 (GRCm39) missense probably damaging 1.00
IGL02820:Rdh13 APN 7 4,438,059 (GRCm39) missense probably damaging 1.00
R0524:Rdh13 UTSW 7 4,447,296 (GRCm39) missense probably damaging 1.00
R1698:Rdh13 UTSW 7 4,430,790 (GRCm39) missense probably damaging 0.97
R2111:Rdh13 UTSW 7 4,448,482 (GRCm39) missense probably benign
R2177:Rdh13 UTSW 7 4,430,666 (GRCm39) missense possibly damaging 0.80
R4811:Rdh13 UTSW 7 4,445,652 (GRCm39) missense probably benign 0.11
R7359:Rdh13 UTSW 7 4,430,696 (GRCm39) missense probably benign 0.37
R8887:Rdh13 UTSW 7 4,434,522 (GRCm39) missense probably damaging 1.00
Posted On 2013-10-07