Incidental Mutation 'IGL01349:Dlc1'
ID 75277
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Dlc1
Ensembl Gene ENSMUSG00000031523
Gene Name deleted in liver cancer 1
Synonyms Arhgap7, A730069N07Rik, STARD12, p122-RhoGAP
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # IGL01349
Quality Score
Status
Chromosome 8
Chromosomal Location 36567751-36953143 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 36583824 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Leucine at position 918 (F918L)
Ref Sequence ENSEMBL: ENSMUSP00000132812 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000033923] [ENSMUST00000098826] [ENSMUST00000163663]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000033923
AA Change: F467L

PolyPhen 2 Score 0.714 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000033923
Gene: ENSMUSG00000031523
AA Change: F467L

DomainStartEndE-ValueType
Pfam:SAM_2 15 76 2.2e-7 PFAM
low complexity region 154 174 N/A INTRINSIC
low complexity region 238 250 N/A INTRINSIC
low complexity region 298 325 N/A INTRINSIC
low complexity region 427 441 N/A INTRINSIC
RhoGAP 653 845 8.82e-59 SMART
START 887 1088 3.93e-59 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000098826
AA Change: F501L

PolyPhen 2 Score 0.714 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000096425
Gene: ENSMUSG00000031523
AA Change: F501L

DomainStartEndE-ValueType
Pfam:SAM_2 49 110 5.9e-8 PFAM
low complexity region 188 208 N/A INTRINSIC
low complexity region 272 284 N/A INTRINSIC
low complexity region 332 359 N/A INTRINSIC
low complexity region 461 475 N/A INTRINSIC
RhoGAP 687 879 8.82e-59 SMART
START 921 1122 3.93e-59 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000163663
AA Change: F918L

PolyPhen 2 Score 0.961 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000132812
Gene: ENSMUSG00000031523
AA Change: F918L

DomainStartEndE-ValueType
low complexity region 353 369 N/A INTRINSIC
low complexity region 388 403 N/A INTRINSIC
Pfam:SAM_2 466 527 1.2e-7 PFAM
low complexity region 605 625 N/A INTRINSIC
low complexity region 689 701 N/A INTRINSIC
low complexity region 749 776 N/A INTRINSIC
low complexity region 878 892 N/A INTRINSIC
RhoGAP 1104 1296 8.82e-59 SMART
START 1338 1539 3.93e-59 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a GTPase-activating protein (GAP) that is a member of the rhoGAP family of proteins which play a role in the regulation of small GTP-binding proteins. GAP family proteins participate in signaling pathways that regulate cell processes involved in cytoskeletal changes. This gene functions as a tumor suppressor gene in a number of common cancers, including prostate, lung, colorectal, and breast cancers. Multiple transcript variants due to alternative promoters and alternative splicing have been found for this gene.[provided by RefSeq, Apr 2010]
PHENOTYPE: Homozygous mutants die by E10.5 with variable defects in the neural tube, heart, brain and placenta. Mouse embryonic fibroblasts homozygous for an activated conditional allele exhibti increased sensitivity to Ras-induced transformation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 C T 11: 9,292,076 S1313L probably benign Het
Adam28 T C 14: 68,611,006 H667R probably benign Het
Arap1 T C 7: 101,387,152 V382A possibly damaging Het
Arih2 T C 9: 108,605,410 Y444C probably damaging Het
Asxl3 T G 18: 22,524,237 V1768G probably benign Het
Bbs9 T A 9: 22,887,683 M869K probably benign Het
C4bp A G 1: 130,642,928 probably benign Het
Cc2d2a A T 5: 43,723,784 Y1167F probably benign Het
Cgn T A 3: 94,767,176 K884* probably null Het
Chd1l T C 3: 97,591,234 Y283C probably benign Het
Cry1 A G 10: 85,148,739 V157A probably benign Het
Dcc T A 18: 71,370,737 D950V probably damaging Het
Dnah2 T C 11: 69,475,606 N1890S probably damaging Het
Dnah5 A G 15: 28,294,913 probably benign Het
Eif4b C T 15: 102,091,423 T412I probably benign Het
Eloa A C 4: 136,014,447 Y29D probably benign Het
Erbb4 A G 1: 68,346,593 F279S probably benign Het
Etl4 A G 2: 20,713,396 D316G probably damaging Het
Gm5114 T C 7: 39,409,107 S363G probably benign Het
Gpam A G 19: 55,096,119 probably null Het
Il17rd T A 14: 27,095,944 S197T probably damaging Het
Iqsec3 T C 6: 121,473,124 E147G possibly damaging Het
Itk T A 11: 46,341,200 T303S possibly damaging Het
Kcnh6 A G 11: 106,023,917 D716G possibly damaging Het
Lca5 A G 9: 83,426,617 S59P probably damaging Het
Lrrc40 T C 3: 158,058,665 probably benign Het
Mmp7 T C 9: 7,699,334 probably benign Het
Mycbp2 T C 14: 103,122,547 T4427A probably damaging Het
Nf2 T C 11: 4,784,472 D513G possibly damaging Het
Olfr10 T A 11: 49,318,300 Y251* probably null Het
Pde7a C T 3: 19,229,679 probably benign Het
Pira2 T C 7: 3,844,139 T135A probably damaging Het
Rb1 T C 14: 73,269,118 Y397C probably damaging Het
Ros1 A T 10: 52,051,026 M2187K probably damaging Het
Ryr2 T A 13: 11,587,239 I4586F possibly damaging Het
Serpinb3c A T 1: 107,272,783 M210K probably damaging Het
Slc22a19 C A 19: 7,674,427 V472F probably benign Het
Slc4a11 A G 2: 130,686,943 I462T probably benign Het
Spag11b A T 8: 19,141,476 H55L probably damaging Het
Trpv5 G T 6: 41,675,375 N125K possibly damaging Het
Ubr4 G T 4: 139,480,728 R4940L unknown Het
Vcan T A 13: 89,703,943 H966L probably damaging Het
Vmn1r204 T A 13: 22,556,334 I45K probably damaging Het
Vnn3 A T 10: 23,851,916 I75F probably damaging Het
Vps13b A T 15: 35,793,945 M2256L probably benign Het
Zfc3h1 T A 10: 115,423,448 L1642M probably damaging Het
Other mutations in Dlc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00493:Dlc1 APN 8 36570282 utr 3 prime probably benign
IGL00807:Dlc1 APN 8 36572848 missense probably benign 0.01
IGL00924:Dlc1 APN 8 36938214 missense probably benign
IGL01419:Dlc1 APN 8 36850217 missense probably benign 0.02
IGL01871:Dlc1 APN 8 36850180 missense probably damaging 0.99
IGL01937:Dlc1 APN 8 36850191 missense probably benign 0.25
IGL02525:Dlc1 APN 8 36579646 missense probably damaging 1.00
IGL02696:Dlc1 APN 8 36574172 missense possibly damaging 0.65
IGL02826:Dlc1 APN 8 36570275 utr 3 prime probably benign
IGL03029:Dlc1 APN 8 36571262 splice site probably null
BB001:Dlc1 UTSW 8 36571416 missense probably benign 0.03
BB011:Dlc1 UTSW 8 36571416 missense probably benign 0.03
IGL02835:Dlc1 UTSW 8 36583901 missense probably damaging 1.00
R0068:Dlc1 UTSW 8 36937721 missense probably benign
R0068:Dlc1 UTSW 8 36937721 missense probably benign
R0164:Dlc1 UTSW 8 36599440 missense probably damaging 0.96
R0164:Dlc1 UTSW 8 36599440 missense probably damaging 0.96
R0218:Dlc1 UTSW 8 36850229 missense probably benign
R0419:Dlc1 UTSW 8 36583586 missense possibly damaging 0.69
R0513:Dlc1 UTSW 8 36584010 missense probably damaging 1.00
R0645:Dlc1 UTSW 8 36574049 missense possibly damaging 0.60
R0646:Dlc1 UTSW 8 36858051 missense probably benign
R0727:Dlc1 UTSW 8 36572674 missense probably damaging 0.99
R0792:Dlc1 UTSW 8 36938548 missense probably benign 0.00
R1061:Dlc1 UTSW 8 36858051 missense probably benign
R1221:Dlc1 UTSW 8 36584831 missense probably benign
R1440:Dlc1 UTSW 8 36593463 splice site probably benign
R1501:Dlc1 UTSW 8 36938148 missense probably benign 0.06
R1606:Dlc1 UTSW 8 36850252 missense probably benign
R1707:Dlc1 UTSW 8 36937609 missense probably benign 0.03
R1750:Dlc1 UTSW 8 36858090 splice site probably null
R1762:Dlc1 UTSW 8 36937585 missense probably benign 0.25
R2041:Dlc1 UTSW 8 36582768 missense probably damaging 1.00
R2055:Dlc1 UTSW 8 36593381 missense probably damaging 0.98
R2091:Dlc1 UTSW 8 36937609 missense probably benign 0.00
R2987:Dlc1 UTSW 8 36574152 missense probably damaging 0.97
R4285:Dlc1 UTSW 8 36574128 missense possibly damaging 0.49
R4294:Dlc1 UTSW 8 36584753 missense possibly damaging 0.47
R4631:Dlc1 UTSW 8 36937558 critical splice donor site probably null
R4828:Dlc1 UTSW 8 36850246 missense possibly damaging 0.69
R4867:Dlc1 UTSW 8 36584645 missense probably benign 0.01
R4902:Dlc1 UTSW 8 36577131 missense probably damaging 1.00
R5067:Dlc1 UTSW 8 36584493 missense probably benign 0.04
R5068:Dlc1 UTSW 8 36938030 missense probably benign
R5198:Dlc1 UTSW 8 36938398 missense probably damaging 1.00
R5471:Dlc1 UTSW 8 36584725 missense probably benign 0.26
R5668:Dlc1 UTSW 8 36937501 unclassified probably benign
R5915:Dlc1 UTSW 8 36938675 utr 5 prime probably benign
R6323:Dlc1 UTSW 8 36938383 missense possibly damaging 0.62
R6655:Dlc1 UTSW 8 36572716 missense probably damaging 1.00
R6908:Dlc1 UTSW 8 36937687 missense probably benign 0.02
R6914:Dlc1 UTSW 8 36938210 missense probably benign
R6942:Dlc1 UTSW 8 36938210 missense probably benign
R7269:Dlc1 UTSW 8 36579253 missense probably damaging 1.00
R7271:Dlc1 UTSW 8 36582800 missense probably damaging 0.99
R7462:Dlc1 UTSW 8 36937964 missense unknown
R7548:Dlc1 UTSW 8 36584655 missense probably benign 0.00
R7649:Dlc1 UTSW 8 36582740 missense probably damaging 1.00
R7924:Dlc1 UTSW 8 36571416 missense probably benign 0.03
R7960:Dlc1 UTSW 8 36937835 missense probably benign
R7984:Dlc1 UTSW 8 36938318 missense possibly damaging 0.85
R8227:Dlc1 UTSW 8 36572671 missense probably damaging 1.00
R8491:Dlc1 UTSW 8 36584846 missense probably benign
R8526:Dlc1 UTSW 8 36937814 missense probably benign 0.00
R8715:Dlc1 UTSW 8 36938641 start gained probably benign
R8887:Dlc1 UTSW 8 36584327 missense probably benign 0.34
R8972:Dlc1 UTSW 8 36938240 nonsense probably null
R8988:Dlc1 UTSW 8 36572843 missense probably damaging 0.96
R9031:Dlc1 UTSW 8 36937901 missense possibly damaging 0.95
R9080:Dlc1 UTSW 8 36584852 missense probably benign
R9092:Dlc1 UTSW 8 36732706 missense probably benign 0.03
R9096:Dlc1 UTSW 8 36613567 missense probably benign 0.00
R9097:Dlc1 UTSW 8 36613567 missense probably benign 0.00
R9166:Dlc1 UTSW 8 36599435 missense probably damaging 1.00
R9187:Dlc1 UTSW 8 36938632 start codon destroyed probably null 1.00
R9240:Dlc1 UTSW 8 36584851 missense probably benign
R9276:Dlc1 UTSW 8 36579404 missense possibly damaging 0.83
R9325:Dlc1 UTSW 8 36571364 missense possibly damaging 0.83
Z1176:Dlc1 UTSW 8 36584211 missense probably damaging 1.00
Posted On 2013-10-07