Mutagenetix > Incidental Mutation

Incidental Mutation 'R0800:Stra6l'

76225

Institutional Source

Beutler Lab

Gene Symbol

Stra6l

Ensembl Gene

ENSMUSG00000028327

Gene Name

STRA6-like

Synonyms

1300002K09Rik, Rbpr2

MMRRC Submission

038980-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0800 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

45848664-45887008 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 45882797 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 503 (T503A)

Ref Sequence

ENSEMBL: ENSMUSP00000103412 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030011] [ENSMUST00000107782] [ENSMUST00000107783]

AlphaFold

Q9DBN1

Predicted Effect

probably benign
Transcript: ENSMUST00000030011
AA Change: T503A

PolyPhen 2 Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000030011
Gene: ENSMUSG00000028327
AA Change: T503A

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	13	602	8.7e-228	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107782
AA Change: T412A

PolyPhen 2 Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000103411
Gene: ENSMUSG00000028327
AA Change: T412A

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	1	512	2.8e-221	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107783
AA Change: T503A

PolyPhen 2 Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000103412
Gene: ENSMUSG00000028327
AA Change: T503A

Domain	Start	End	E-Value	Type
Pfam:RBP_receptor	12	603	1e-254	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000165478

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.1%
20x: 93.7%

Validation Efficiency

98% (52/53)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
B230217C12Rik	T	C	11: 97,732,086 (GRCm39)		probably benign	Het
Cacna1g	T	C	11: 94,317,265 (GRCm39)	D1498G	probably damaging	Het
Ces3b	T	A	8: 105,811,901 (GRCm39)	D103E	possibly damaging	Het
Chd5	A	G	4: 152,440,614 (GRCm39)	Y158C	probably damaging	Het
Cic	A	G	7: 24,984,662 (GRCm39)	T1033A	probably benign	Het
Cst13	A	T	2: 148,672,247 (GRCm39)	I141F	possibly damaging	Het
Dnah7a	A	G	1: 53,604,855 (GRCm39)	L1301P	probably damaging	Het
Dnah8	T	A	17: 30,923,636 (GRCm39)	F1201L	probably benign	Het
Dok7	T	C	5: 35,232,633 (GRCm39)		probably benign	Het
Dzip3	A	G	16: 48,774,171 (GRCm39)		probably benign	Het
Eml6	A	G	11: 29,699,877 (GRCm39)	V1753A	probably benign	Het
Fer1l4	A	G	2: 155,887,583 (GRCm39)	F538L	possibly damaging	Het
Fmo2	C	T	1: 162,704,383 (GRCm39)	D508N	probably benign	Het
Gabpb1	A	T	2: 126,472,248 (GRCm39)	Y351N	probably damaging	Het
Gnaq	T	A	19: 16,312,428 (GRCm39)	V230E	probably damaging	Het
Gprc5c	A	C	11: 114,757,537 (GRCm39)	K48Q	probably damaging	Het
Gzmd	A	G	14: 56,369,948 (GRCm39)	L11P	unknown	Het
Hbq1b	A	C	11: 32,237,581 (GRCm39)	H123P	probably damaging	Het
Hibadh	T	A	6: 52,533,490 (GRCm39)	I209F	probably damaging	Het
Il17f	G	T	1: 20,848,177 (GRCm39)	C100*	probably null	Het
Iqca1	C	A	1: 90,070,453 (GRCm39)	G133V	probably null	Het
Itga8	A	T	2: 12,198,362 (GRCm39)	V541E	possibly damaging	Het
Kifc5b	T	A	17: 27,142,158 (GRCm39)	V212D	probably benign	Het
Klra2	A	T	6: 131,207,137 (GRCm39)	Y157*	probably null	Het
Kprp	T	C	3: 92,732,342 (GRCm39)	Y236C	unknown	Het
Mmp12	A	T	9: 7,357,827 (GRCm39)	M414L	possibly damaging	Het
Myh6	A	G	14: 55,190,735 (GRCm39)		probably benign	Het
Nlgn2	A	G	11: 69,716,823 (GRCm39)	F573L	possibly damaging	Het
Or10j7	C	T	1: 173,011,627 (GRCm39)	A125T	probably damaging	Het
Or4c124	A	G	2: 89,156,008 (GRCm39)	V172A	probably benign	Het
Pakap	T	A	4: 57,709,650 (GRCm39)	D198E	probably benign	Het
Papss1	T	A	3: 131,305,615 (GRCm39)		probably benign	Het
Parp4	A	G	14: 56,827,408 (GRCm39)	T181A	probably benign	Het
Piwil2	A	T	14: 70,646,486 (GRCm39)		probably benign	Het
Pla2g12b	A	G	10: 59,239,642 (GRCm39)	N17S	probably benign	Het
Polr3c	C	A	3: 96,626,627 (GRCm39)	V266L	probably damaging	Het
Pou3f3	A	G	1: 42,737,527 (GRCm39)	T408A	probably damaging	Het
Pskh1	A	G	8: 106,640,238 (GRCm39)	Y306C	probably damaging	Het
Rom1	T	A	19: 8,906,272 (GRCm39)	D89V	probably damaging	Het
Sell	T	A	1: 163,893,770 (GRCm39)		probably null	Het
Sox6	A	G	7: 115,178,249 (GRCm39)		probably null	Het
Speg	T	C	1: 75,400,133 (GRCm39)	S2527P	probably damaging	Het
Stat3	A	G	11: 100,784,981 (GRCm39)		probably benign	Het
Tapbp	A	G	17: 34,145,227 (GRCm39)	T375A	probably benign	Het
Tgm6	G	A	2: 129,985,342 (GRCm39)	V382M	possibly damaging	Het
Trappc9	A	T	15: 72,824,981 (GRCm39)		probably benign	Het
Txlnb	A	G	10: 17,675,240 (GRCm39)	N131S	possibly damaging	Het
Usp19	A	G	9: 108,372,353 (GRCm39)	E469G	probably damaging	Het
Vmn2r17	T	A	5: 109,575,192 (GRCm39)		probably benign	Het
Zfp750	T	C	11: 121,402,838 (GRCm39)	T637A	probably benign	Het
Zhx2	A	C	15: 57,686,124 (GRCm39)	I498L	probably damaging	Het

Other mutations in Stra6l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01448:Stra6l	APN	4	45,864,864 (GRCm39)	splice site	probably null
IGL02343:Stra6l	APN	4	45,869,588 (GRCm39)	missense	probably damaging	0.99
IGL02710:Stra6l	APN	4	45,882,728 (GRCm39)	missense	possibly damaging	0.72
IGL02880:Stra6l	APN	4	45,885,278 (GRCm39)	missense	possibly damaging	0.70
IGL03034:Stra6l	APN	4	45,885,392 (GRCm39)	missense	probably benign	0.41
IGL03163:Stra6l	APN	4	45,881,455 (GRCm39)	missense	probably benign	0.03
IGL03355:Stra6l	APN	4	45,873,689 (GRCm39)	missense	probably benign	0.16
K2124:Stra6l	UTSW	4	45,870,770 (GRCm39)	splice site	probably benign
R1171:Stra6l	UTSW	4	45,864,982 (GRCm39)	missense	probably benign
R1931:Stra6l	UTSW	4	45,882,698 (GRCm39)	nonsense	probably null
R1982:Stra6l	UTSW	4	45,867,237 (GRCm39)	nonsense	probably null
R2331:Stra6l	UTSW	4	45,858,224 (GRCm39)	critical splice donor site	probably null
R4691:Stra6l	UTSW	4	45,882,851 (GRCm39)	missense	probably benign	0.39
R4846:Stra6l	UTSW	4	45,873,682 (GRCm39)	missense	possibly damaging	0.76
R5175:Stra6l	UTSW	4	45,870,860 (GRCm39)	missense	probably benign	0.01
R5633:Stra6l	UTSW	4	45,881,455 (GRCm39)	missense	probably benign	0.00
R6212:Stra6l	UTSW	4	45,884,664 (GRCm39)	missense	probably benign
R6517:Stra6l	UTSW	4	45,879,473 (GRCm39)	missense	probably benign
R6534:Stra6l	UTSW	4	45,860,041 (GRCm39)	splice site	probably null
R6584:Stra6l	UTSW	4	45,869,635 (GRCm39)	splice site	probably null
R7763:Stra6l	UTSW	4	45,869,570 (GRCm39)	nonsense	probably null
R8400:Stra6l	UTSW	4	45,864,905 (GRCm39)	missense	probably damaging	1.00
R8511:Stra6l	UTSW	4	45,885,347 (GRCm39)	missense	probably benign	0.00
R9007:Stra6l	UTSW	4	45,864,910 (GRCm39)	missense	possibly damaging	0.81
R9313:Stra6l	UTSW	4	45,881,454 (GRCm39)	missense	probably benign
R9379:Stra6l	UTSW	4	45,849,093 (GRCm39)	missense	probably benign
R9400:Stra6l	UTSW	4	45,885,293 (GRCm39)	missense	probably damaging	1.00
R9764:Stra6l	UTSW	4	45,884,602 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TCCCTCAGCATTGTGGGCAAAC -3'
(R):5'- GTGCCTGGCTTTATGACCTCTGAC -3'

Sequencing Primer
(F):5'- GTTGCAGAGTTTAACACCCAGTC -3'
(R):5'- GGCTTTATGACCTCTGACAGAAAC -3'

Posted On

2013-10-16