Mutagenetix > Incidental Mutation

Incidental Mutation 'R0781:Tmem108'

76636

Institutional Source

Beutler Lab

Gene Symbol

Tmem108

Ensembl Gene

ENSMUSG00000042757

Gene Name

transmembrane protein 108

Synonyms

B130017P16Rik

MMRRC Submission

038961-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0781 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

103360146-103639036 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 103361889 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 566 (V566M)

Ref Sequence

ENSEMBL: ENSMUSP00000140027 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049452] [ENSMUST00000124310] [ENSMUST00000189066] [ENSMUST00000189588]

AlphaFold

Q8BHE4

Predicted Effect

probably damaging
Transcript: ENSMUST00000049452
AA Change: V566M

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000046021
Gene: ENSMUSG00000042757
AA Change: V566M

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:TMEM108	61	574	1.6e-275	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124310

SMART Domains

Protein: ENSMUSP00000116249
Gene: ENSMUSG00000032556

Domain	Start	End	E-Value	Type
Filament	102	416	6.85e-79	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144420

Predicted Effect

probably damaging
Transcript: ENSMUST00000189066
AA Change: V566M

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000141160
Gene: ENSMUSG00000042757
AA Change: V566M

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
low complexity region	132	179	N/A	INTRINSIC
low complexity region	292	314	N/A	INTRINSIC
low complexity region	391	410	N/A	INTRINSIC
transmembrane domain	468	490	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000189588
AA Change: V566M

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000140027
Gene: ENSMUSG00000042757
AA Change: V566M

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
low complexity region	132	179	N/A	INTRINSIC
low complexity region	292	314	N/A	INTRINSIC
low complexity region	391	410	N/A	INTRINSIC
transmembrane domain	468	490	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191069

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000215604

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216712

Meta Mutation Damage Score

0.1077

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.0%
20x: 93.2%

Validation Efficiency

97% (67/69)

MGI Phenotype

PHENOTYPE: Mice with drastically reduced expression exhibit decreased excitatory postsynaptic currents of dentate gyrate granule neurons, impaired sensorimotor gating, and behavioral deficits. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921513D11Rik	G	T	17: 79,935,180 (GRCm39)	A98S	probably benign	Het
Acp2	A	G	2: 91,038,767 (GRCm39)		probably null	Het
Akap13	T	G	7: 75,261,125 (GRCm39)	S447A	possibly damaging	Het
Alk	G	A	17: 72,291,740 (GRCm39)		probably benign	Het
Ankrd55	A	G	13: 112,517,767 (GRCm39)		probably benign	Het
Arhgef39	T	C	4: 43,496,834 (GRCm39)	T327A	probably benign	Het
Calhm5	T	G	10: 33,972,013 (GRCm39)	I141L	probably benign	Het
Cdan1	G	A	2: 120,551,083 (GRCm39)	A1103V	probably damaging	Het
Cdk17	T	A	10: 93,074,895 (GRCm39)	Y3*	probably null	Het
Cdon	T	C	9: 35,367,733 (GRCm39)		probably benign	Het
Cntn3	T	A	6: 102,222,119 (GRCm39)	N460I	probably benign	Het
Cntrl	T	A	2: 35,050,639 (GRCm39)	C985S	possibly damaging	Het
Col6a2	T	C	10: 76,443,574 (GRCm39)	E497G	probably benign	Het
Crybg1	A	G	10: 43,875,089 (GRCm39)	M673T	possibly damaging	Het
Csmd1	A	C	8: 15,971,174 (GRCm39)	I3047S	probably benign	Het
Cyp2u1	A	G	3: 131,087,258 (GRCm39)	I441T	possibly damaging	Het
Disp2	T	C	2: 118,620,920 (GRCm39)	S551P	probably damaging	Het
Dstyk	A	G	1: 132,381,063 (GRCm39)		probably benign	Het
Frem1	T	C	4: 82,868,557 (GRCm39)	S1457G	probably damaging	Het
Gabbr2	C	T	4: 46,718,838 (GRCm39)	C613Y	probably damaging	Het
Gdf7	C	A	12: 8,351,555 (GRCm39)		probably benign	Het
Hnrnpul2	A	G	19: 8,804,110 (GRCm39)	R570G	probably damaging	Het
Ift70a1	A	T	2: 75,810,320 (GRCm39)	C588S	probably damaging	Het
Iqcf4	T	C	9: 106,445,860 (GRCm39)	I96V	probably benign	Het
Iqck	G	A	7: 118,498,880 (GRCm39)	D173N	possibly damaging	Het
Itpr3	C	T	17: 27,329,529 (GRCm39)	H1518Y	probably benign	Het
Kdm5d	T	A	Y: 910,539 (GRCm39)	L250H	probably damaging	Het
Kntc1	C	T	5: 123,937,965 (GRCm39)		probably benign	Het
Lmtk3	T	A	7: 45,444,427 (GRCm39)		probably benign	Het
Lpin3	A	G	2: 160,735,999 (GRCm39)	D93G	probably benign	Het
Ncoa6	A	T	2: 155,253,440 (GRCm39)		probably benign	Het
Nudt7	G	A	8: 114,862,111 (GRCm39)		probably benign	Het
Nup160	A	G	2: 90,563,563 (GRCm39)		probably benign	Het
Oit3	G	A	10: 59,264,016 (GRCm39)	R373C	probably damaging	Het
Olfml2a	A	T	2: 38,849,765 (GRCm39)	I494L	probably damaging	Het
Opa3	A	G	7: 18,962,524 (GRCm39)		probably benign	Het
Or51e2	A	G	7: 102,392,214 (GRCm39)		probably benign	Het
Or5ac15	A	T	16: 58,940,187 (GRCm39)	V82D	probably damaging	Het
Or9r7	A	G	10: 129,962,522 (GRCm39)	Y135H	probably damaging	Het
Pak3	TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	X: 142,526,889 (GRCm39)		probably benign	Het
Parp6	G	T	9: 59,556,847 (GRCm39)	C584F	probably damaging	Het
Pcgf2	A	G	11: 97,582,676 (GRCm39)		probably benign	Het
Pde3a	T	C	6: 141,405,042 (GRCm39)		probably benign	Het
Pitrm1	A	G	13: 6,608,280 (GRCm39)	D335G	probably benign	Het
Pkhd1	A	T	1: 20,187,708 (GRCm39)	N3533K	probably benign	Het
Pkp4	T	C	2: 59,169,109 (GRCm39)	L752P	probably damaging	Het
Plcb3	C	A	19: 6,939,281 (GRCm39)	E566*	probably null	Het
Ppef2	T	C	5: 92,392,689 (GRCm39)	K261R	probably benign	Het
Prdm14	A	G	1: 13,184,585 (GRCm39)	S529P	probably damaging	Het
Prune2	T	C	19: 17,102,586 (GRCm39)	S2582P	probably benign	Het
Sardh	G	A	2: 27,081,931 (GRCm39)	T865I	possibly damaging	Het
Slc26a3	A	T	12: 31,515,812 (GRCm39)	I571F	possibly damaging	Het
Slc5a5	A	T	8: 71,342,864 (GRCm39)	M232K	probably benign	Het
Slc9a1	T	A	4: 133,097,859 (GRCm39)	M2K	probably benign	Het
Spata31e3	A	T	13: 50,402,296 (GRCm39)	D83E	possibly damaging	Het
Ss18l1	G	A	2: 179,697,647 (GRCm39)	S177N	possibly damaging	Het
Svs5	A	T	2: 164,175,507 (GRCm39)	I120L	probably benign	Het
Tcl1b1	G	T	12: 105,126,074 (GRCm39)	V19F	probably damaging	Het
Trmu	C	A	15: 85,763,604 (GRCm39)	C9*	probably null	Het
Vnn1	A	T	10: 23,775,499 (GRCm39)	I250F	possibly damaging	Het
Vps13c	T	A	9: 67,879,285 (GRCm39)	Y3409N	probably damaging	Het
Xrn1	T	A	9: 95,873,322 (GRCm39)	N695K	probably benign	Het
Zfp84	T	A	7: 29,470,797 (GRCm39)	M1K	probably null	Het
Zfyve26	G	A	12: 79,326,841 (GRCm39)	R761C	probably damaging	Het
Zp3r	A	G	1: 130,505,621 (GRCm39)		probably null	Het

Other mutations in Tmem108

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01633:Tmem108	APN	9	103,361,950 (GRCm39)	missense	probably benign	0.04
IGL02008:Tmem108	APN	9	103,366,439 (GRCm39)	missense	possibly damaging	0.85
IGL02318:Tmem108	APN	9	103,376,981 (GRCm39)	missense	probably benign	0.14
R0019:Tmem108	UTSW	9	103,366,539 (GRCm39)	missense	possibly damaging	0.93
R0092:Tmem108	UTSW	9	103,366,504 (GRCm39)	missense	possibly damaging	0.71
R0378:Tmem108	UTSW	9	103,376,856 (GRCm39)	missense	possibly damaging	0.71
R1138:Tmem108	UTSW	9	103,376,168 (GRCm39)	missense	possibly damaging	0.71
R2090:Tmem108	UTSW	9	103,361,976 (GRCm39)	missense	possibly damaging	0.57
R2137:Tmem108	UTSW	9	103,377,162 (GRCm39)	missense	possibly damaging	0.71
R2520:Tmem108	UTSW	9	103,366,481 (GRCm39)	missense	possibly damaging	0.85
R4724:Tmem108	UTSW	9	103,376,688 (GRCm39)	missense	possibly damaging	0.86
R4883:Tmem108	UTSW	9	103,376,276 (GRCm39)	missense	possibly damaging	0.93
R5358:Tmem108	UTSW	9	103,376,717 (GRCm39)	missense	probably damaging	0.98
R6337:Tmem108	UTSW	9	103,376,960 (GRCm39)	missense	possibly damaging	0.95
R6888:Tmem108	UTSW	9	103,376,915 (GRCm39)	missense	probably damaging	1.00
R7223:Tmem108	UTSW	9	103,376,733 (GRCm39)	missense	not run
R8014:Tmem108	UTSW	9	103,376,606 (GRCm39)	missense	probably benign	0.04
R8139:Tmem108	UTSW	9	103,377,084 (GRCm39)	missense	probably benign	0.02
R8355:Tmem108	UTSW	9	103,377,069 (GRCm39)	missense	possibly damaging	0.86
R8455:Tmem108	UTSW	9	103,377,069 (GRCm39)	missense	possibly damaging	0.86
R8937:Tmem108	UTSW	9	103,361,981 (GRCm39)	missense	probably benign	0.15
R8940:Tmem108	UTSW	9	103,377,156 (GRCm39)	missense	possibly damaging	0.86

Predicted Primers

PCR Primer
(F):5'- CAATCAGTGCAACCGCTTTGCTTAG -3'
(R):5'- AAGTTTGTGTGACTGCCACCCC -3'

Sequencing Primer
(F):5'- GCAACCGCTTTGCTTAGAAATAC -3'
(R):5'- GACTGCCACCCCTCTCTC -3'

Posted On

2013-10-16