Mutagenetix > Incidental Mutation

Incidental Mutation 'R0837:Rtn4rl2'

77977

Institutional Source

Beutler Lab

Gene Symbol

Rtn4rl2

Ensembl Gene

ENSMUSG00000050896

Gene Name

reticulon 4 receptor-like 2

Synonyms

Ngrl3, Ngrh1, Ngr2

MMRRC Submission

039016-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.511) question?

Stock #

R0837 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

84702268-84717054 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 84711036 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 70 (N70S)

Ref Sequence

ENSEMBL: ENSMUSP00000057725 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054514] [ENSMUST00000151799]

AlphaFold

Q7M6Z0

Predicted Effect

probably damaging
Transcript: ENSMUST00000054514
AA Change: N70S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000057725
Gene: ENSMUSG00000050896
AA Change: N70S

Domain	Start	End	E-Value	Type
LRRNT	30	64	1.45e-1	SMART
LRR	63	82	2.47e1	SMART
LRR	83	104	6.58e0	SMART
LRR	105	129	2.32e-1	SMART
LRR_TYP	130	153	2.4e-3	SMART
LRR_TYP	154	177	2.71e-2	SMART
LRR_TYP	178	201	1.36e-2	SMART
LRR_TYP	202	225	4.72e-2	SMART
LRR	226	249	1.25e-1	SMART
LRRCT	261	311	3.1e-7	SMART
low complexity region	367	378	N/A	INTRINSIC
low complexity region	405	420	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151759

Predicted Effect

probably damaging
Transcript: ENSMUST00000151799
AA Change: N76S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000118362
Gene: ENSMUSG00000050896
AA Change: N76S

Domain	Start	End	E-Value	Type
LRRNT	36	70	1.45e-1	SMART
LRR	69	88	2.47e1	SMART
LRR	89	110	6.58e0	SMART
LRR	111	135	2.32e-1	SMART
LRR_TYP	136	159	2.4e-3	SMART
LRR_TYP	160	183	2.71e-2	SMART
LRR_TYP	184	207	1.36e-2	SMART
LRR_TYP	208	231	4.72e-2	SMART
LRR	232	255	1.25e-1	SMART
LRRCT	267	317	3.1e-7	SMART
low complexity region	373	384	N/A	INTRINSIC
low complexity region	411	426	N/A	INTRINSIC

Meta Mutation Damage Score

0.8831

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.4%
20x: 94.8%

Validation Efficiency

96% (44/46)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930563I02Rik	T	C	14: 60,333,375 (GRCm39)		probably benign	Het
4930579C12Rik	A	G	9: 89,050,260 (GRCm39)		noncoding transcript	Het
Adam34	T	A	8: 44,104,537 (GRCm39)	K369N	probably benign	Het
Ap1g1	T	C	8: 110,577,697 (GRCm39)	W481R	probably damaging	Het
Bicdl1	G	A	5: 115,869,351 (GRCm39)	P26S	probably benign	Het
Cacna1c	A	T	6: 118,607,231 (GRCm39)	C1224*	probably null	Het
Cpsf2	C	T	12: 101,963,501 (GRCm39)		probably benign	Het
Cyp11b2	G	A	15: 74,725,490 (GRCm39)	R210W	probably damaging	Het
Dock7	C	T	4: 98,877,495 (GRCm39)	V1048I	probably benign	Het
Dync2h1	C	A	9: 7,077,979 (GRCm39)	A2908S	probably benign	Het
Elane	A	G	10: 79,722,942 (GRCm39)	D116G	probably damaging	Het
Epb41l2	C	T	10: 25,383,714 (GRCm39)	R153C	probably damaging	Het
Gucy2c	G	A	6: 136,699,418 (GRCm39)	P617L	probably damaging	Het
H2ac21	G	A	3: 96,127,439 (GRCm39)	A70T	probably damaging	Het
Kcnq4	T	A	4: 120,604,058 (GRCm39)	I106L	probably benign	Het
Man2b1	A	G	8: 85,823,458 (GRCm39)	N931D	possibly damaging	Het
Mthfs	A	G	9: 89,097,443 (GRCm39)	E100G	probably damaging	Het
Mto1	A	T	9: 78,381,072 (GRCm39)	I639F	probably damaging	Het
Myo15a	A	G	11: 60,378,077 (GRCm39)	E177G	probably damaging	Het
Naip5	T	A	13: 100,367,251 (GRCm39)	M282L	probably benign	Het
Or10aa1	A	G	1: 173,870,053 (GRCm39)	D179G	probably damaging	Het
Pik3c2g	G	A	6: 139,903,425 (GRCm39)		probably benign	Het
Prl7d1	T	A	13: 27,898,321 (GRCm39)	M64L	probably benign	Het
Prnp	A	T	2: 131,778,444 (GRCm39)	N32I	probably damaging	Het
Ptpn11	C	T	5: 121,287,174 (GRCm39)	V406I	probably benign	Het
Rab40c	G	A	17: 26,103,667 (GRCm39)	T151I	probably damaging	Het
Rb1cc1	T	A	1: 6,304,495 (GRCm39)		probably null	Het
Rnf145	T	C	11: 44,415,815 (GRCm39)	V10A	probably benign	Het
Scaper	A	T	9: 55,766,326 (GRCm39)	C483*	probably null	Het
Sema4a	T	A	3: 88,360,405 (GRCm39)	Q58L	possibly damaging	Het
Slf1	T	C	13: 77,249,067 (GRCm39)		probably null	Het
Sycp1	G	T	3: 102,822,561 (GRCm39)	N364K	probably benign	Het
Tenm4	T	C	7: 96,545,482 (GRCm39)		probably benign	Het
Tnfaip2	A	G	12: 111,417,141 (GRCm39)	T537A	probably damaging	Het
Trappc12	A	G	12: 28,753,596 (GRCm39)	I573T	possibly damaging	Het
Ugt2b38	G	A	5: 87,559,632 (GRCm39)	T420I	probably damaging	Het
Ulk1	A	T	5: 110,937,411 (GRCm39)		probably benign	Het
Unc80	G	A	1: 66,688,103 (GRCm39)	C2367Y	possibly damaging	Het
Usp7	C	A	16: 8,521,366 (GRCm39)	G135C	probably damaging	Het
Vmn2r103	A	G	17: 20,014,189 (GRCm39)	Y327C	probably damaging	Het
Vmn2r28	T	A	7: 5,491,026 (GRCm39)	H407L	probably damaging	Het
Zfp804a	A	C	2: 82,089,506 (GRCm39)	T1112P	probably damaging	Het
Zfr2	A	G	10: 81,081,242 (GRCm39)	K431E	probably damaging	Het
Zfy1	A	T	Y: 725,850 (GRCm39)	Y638*	probably null	Het

Other mutations in Rtn4rl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0626:Rtn4rl2	UTSW	2	84,710,763 (GRCm39)	missense	probably damaging	0.99
R1392:Rtn4rl2	UTSW	2	84,710,856 (GRCm39)	missense	probably damaging	1.00
R1392:Rtn4rl2	UTSW	2	84,710,856 (GRCm39)	missense	probably damaging	1.00
R3433:Rtn4rl2	UTSW	2	84,702,444 (GRCm39)	missense	probably damaging	1.00
R3857:Rtn4rl2	UTSW	2	84,710,730 (GRCm39)	critical splice donor site	probably null
R3858:Rtn4rl2	UTSW	2	84,710,730 (GRCm39)	critical splice donor site	probably null
R5044:Rtn4rl2	UTSW	2	84,702,846 (GRCm39)	missense	probably damaging	1.00
R5936:Rtn4rl2	UTSW	2	84,710,775 (GRCm39)	missense	probably damaging	1.00
R6800:Rtn4rl2	UTSW	2	84,710,967 (GRCm39)	missense	probably damaging	1.00
R7755:Rtn4rl2	UTSW	2	84,702,807 (GRCm39)	missense	possibly damaging	0.82
R8375:Rtn4rl2	UTSW	2	84,711,033 (GRCm39)	missense	possibly damaging	0.88
R8416:Rtn4rl2	UTSW	2	84,702,951 (GRCm39)	missense	probably damaging	1.00
R8805:Rtn4rl2	UTSW	2	84,702,558 (GRCm39)	missense	probably damaging	1.00
R9638:Rtn4rl2	UTSW	2	84,710,760 (GRCm39)	missense	probably damaging	1.00
R9749:Rtn4rl2	UTSW	2	84,702,954 (GRCm39)	missense	probably damaging	1.00
R9751:Rtn4rl2	UTSW	2	84,711,039 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGGCAACGATACAGGTGTAGTGAC -3'
(R):5'- TGCACAGTCTCAGTCTTGCAGC -3'

Sequencing Primer
(F):5'- TCTCCAGACCCTGGAAGGTG -3'
(R):5'- aggaaggtagaggcaggag -3'

Posted On

2013-10-16