Incidental Mutation 'IGL01386:Or52ab4'
| ID |
79037 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Or52ab4
|
| Ensembl Gene |
ENSMUSG00000073950 |
| Gene Name |
olfactory receptor family 52 subfamily AB member 4 |
| Synonyms |
Olfr599, MOR23-1, GA_x6K02T2PBJ9-6047402-6048349 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.063)
|
| Stock # |
IGL01386
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
7 |
| Chromosomal Location |
102987219-102988268 bp(+) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
A to T
at 102987974 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Lysine to Stop codon
at position 238
(K238*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149281
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000098201]
[ENSMUST00000214329]
[ENSMUST00000215042]
|
| AlphaFold |
Q8VG01 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000098201
AA Change: K238*
|
| SMART Domains |
Protein: ENSMUSP00000095803
Gene: ENSMUSG00000073950
AA Change: K238*
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
33 |
311 |
1.8e-94 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
37 |
308 |
1.2e-6 |
PFAM |
|
Pfam:7tm_1
|
43 |
293 |
2.1e-16 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000214329
AA Change: K238*
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000215042
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actn1 |
T |
C |
12: 80,240,446 (GRCm39) |
R214G |
probably benign |
Het |
| Cacna1e |
T |
A |
1: 154,348,123 (GRCm39) |
K817N |
probably benign |
Het |
| Cyp3a16 |
A |
G |
5: 145,377,244 (GRCm39) |
F448L |
probably damaging |
Het |
| Dpp6 |
T |
A |
5: 27,869,760 (GRCm39) |
|
probably null |
Het |
| Eif2ak3 |
C |
T |
6: 70,869,710 (GRCm39) |
T799M |
probably damaging |
Het |
| Erbb4 |
A |
T |
1: 68,383,090 (GRCm39) |
S302R |
probably damaging |
Het |
| Fam217a |
T |
A |
13: 35,099,632 (GRCm39) |
|
probably benign |
Het |
| Flt4 |
C |
A |
11: 49,528,162 (GRCm39) |
A995D |
probably benign |
Het |
| Fpr-rs7 |
G |
A |
17: 20,334,454 (GRCm39) |
S12L |
probably damaging |
Het |
| Fsd1 |
C |
T |
17: 56,303,733 (GRCm39) |
S491F |
probably damaging |
Het |
| Hpcal4 |
T |
C |
4: 123,083,035 (GRCm39) |
|
probably null |
Het |
| Intu |
A |
T |
3: 40,647,017 (GRCm39) |
D630V |
probably damaging |
Het |
| Jak3 |
A |
G |
8: 72,136,933 (GRCm39) |
D703G |
probably damaging |
Het |
| Lama4 |
A |
G |
10: 38,887,060 (GRCm39) |
I122V |
probably benign |
Het |
| Mrpl11 |
A |
C |
19: 5,013,409 (GRCm39) |
K92T |
probably null |
Het |
| Mtarc2 |
A |
G |
1: 184,551,413 (GRCm39) |
|
probably benign |
Het |
| Mylk |
A |
G |
16: 34,791,610 (GRCm39) |
|
probably null |
Het |
| Parpbp |
A |
C |
10: 87,975,848 (GRCm39) |
Y88* |
probably null |
Het |
| Plod2 |
G |
A |
9: 92,488,655 (GRCm39) |
R627Q |
probably damaging |
Het |
| Rapsn |
G |
T |
2: 90,867,144 (GRCm39) |
A149S |
probably damaging |
Het |
| Ripk3 |
T |
G |
14: 56,023,484 (GRCm39) |
Q109P |
probably damaging |
Het |
| Scaf11 |
T |
C |
15: 96,318,361 (GRCm39) |
D401G |
probably damaging |
Het |
| Serpine2 |
G |
A |
1: 79,779,268 (GRCm39) |
T150I |
probably damaging |
Het |
| Sh2d6 |
T |
A |
6: 72,495,945 (GRCm39) |
T98S |
probably benign |
Het |
| Slc28a1 |
G |
T |
7: 80,814,427 (GRCm39) |
A513S |
probably benign |
Het |
| Tanc2 |
T |
C |
11: 105,777,207 (GRCm39) |
F795S |
probably damaging |
Het |
| Tcim |
T |
A |
8: 24,928,705 (GRCm39) |
I70F |
probably benign |
Het |
| Thbd |
G |
A |
2: 148,249,602 (GRCm39) |
Q89* |
probably null |
Het |
| Tmem115 |
C |
T |
9: 107,411,859 (GRCm39) |
T61I |
probably damaging |
Het |
| Tsc2 |
A |
T |
17: 24,832,259 (GRCm39) |
V650E |
probably damaging |
Het |
| Tubgcp6 |
A |
T |
15: 88,992,199 (GRCm39) |
Y595* |
probably null |
Het |
| Uroc1 |
C |
T |
6: 90,323,747 (GRCm39) |
A398V |
probably damaging |
Het |
| Vmn1r31 |
T |
C |
6: 58,449,587 (GRCm39) |
T93A |
probably benign |
Het |
| Vmn2r113 |
A |
G |
17: 23,175,024 (GRCm39) |
E545G |
possibly damaging |
Het |
| Vps13a |
A |
G |
19: 16,678,516 (GRCm39) |
V1155A |
possibly damaging |
Het |
| Zfp667 |
A |
G |
7: 6,307,869 (GRCm39) |
H179R |
probably benign |
Het |
|
| Other mutations in Or52ab4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01744:Or52ab4
|
APN |
7 |
102,987,435 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02011:Or52ab4
|
APN |
7 |
102,988,056 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02328:Or52ab4
|
APN |
7 |
102,987,497 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02630:Or52ab4
|
APN |
7 |
102,987,636 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03119:Or52ab4
|
APN |
7 |
102,987,929 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4468001:Or52ab4
|
UTSW |
7 |
102,987,807 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0599:Or52ab4
|
UTSW |
7 |
102,987,393 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4084:Or52ab4
|
UTSW |
7 |
102,987,527 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5068:Or52ab4
|
UTSW |
7 |
102,987,229 (GRCm39) |
start gained |
probably null |
|
|
R5069:Or52ab4
|
UTSW |
7 |
102,987,229 (GRCm39) |
start gained |
probably null |
|
|
R5280:Or52ab4
|
UTSW |
7 |
102,987,708 (GRCm39) |
missense |
probably benign |
|
|
R5816:Or52ab4
|
UTSW |
7 |
102,988,202 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6560:Or52ab4
|
UTSW |
7 |
102,987,945 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7001:Or52ab4
|
UTSW |
7 |
102,987,428 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R7890:Or52ab4
|
UTSW |
7 |
102,987,537 (GRCm39) |
missense |
probably benign |
|
|
R8295:Or52ab4
|
UTSW |
7 |
102,987,474 (GRCm39) |
missense |
probably benign |
0.08 |
|
R8430:Or52ab4
|
UTSW |
7 |
102,988,164 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8946:Or52ab4
|
UTSW |
7 |
102,987,573 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9045:Or52ab4
|
UTSW |
7 |
102,987,903 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9402:Or52ab4
|
UTSW |
7 |
102,988,196 (GRCm39) |
missense |
probably benign |
|
|
| Posted On |
2013-11-05 |
Incidental Mutation