Incidental Mutation 'IGL01419:Tarbp1'
ID 80333
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Tarbp1
Ensembl Gene ENSMUSG00000090290
Gene Name TAR RNA binding protein 1
Synonyms Gm17296
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL01419
Quality Score
Status
Chromosome 8
Chromosomal Location 127152068-127201804 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 127154894 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 1410 (D1410G)
Ref Sequence ENSEMBL: ENSMUSP00000129815 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000059093] [ENSMUST00000170518] [ENSMUST00000211868]
AlphaFold E9Q368
Predicted Effect probably benign
Transcript: ENSMUST00000059093
SMART Domains Protein: ENSMUSP00000058279
Gene: ENSMUSG00000051671

DomainStartEndE-ValueType
Pfam:COX6B 1 67 6e-21 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000170518
AA Change: D1410G

PolyPhen 2 Score 0.031 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000129815
Gene: ENSMUSG00000090290
AA Change: D1410G

DomainStartEndE-ValueType
low complexity region 17 31 N/A INTRINSIC
low complexity region 47 57 N/A INTRINSIC
low complexity region 77 97 N/A INTRINSIC
low complexity region 112 127 N/A INTRINSIC
low complexity region 195 207 N/A INTRINSIC
SCOP:d1gw5a_ 1059 1260 3e-3 SMART
Pfam:SpoU_methylase 1421 1564 2.2e-32 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000211868
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. This element forms a stable stem-loop structure and can be bound by either the protein encoded by this gene or by RNA polymerase II. This protein may act to disengage RNA polymerase II from TAR during transcriptional elongation. Alternatively spliced transcripts of this gene may exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca2 A T 2: 25,327,526 (GRCm39) T672S probably damaging Het
Adamts14 A T 10: 61,041,321 (GRCm39) probably benign Het
Adgrv1 T C 13: 81,705,277 (GRCm39) E791G probably damaging Het
Alkbh8 A G 9: 3,385,354 (GRCm39) R584G probably damaging Het
Apob A T 12: 8,052,251 (GRCm39) I1218F probably damaging Het
Atp5f1a T C 18: 77,865,233 (GRCm39) S52P probably damaging Het
B4galnt3 A G 6: 120,192,351 (GRCm39) S462P possibly damaging Het
Bdkrb1 A G 12: 105,571,040 (GRCm39) H202R possibly damaging Het
Bltp1 T C 3: 37,102,270 (GRCm39) S1323P probably damaging Het
Cd300lf T C 11: 115,017,180 (GRCm39) K48E probably benign Het
Cfhr4 T C 1: 139,667,382 (GRCm39) probably null Het
Chuk A T 19: 44,085,420 (GRCm39) I242K probably damaging Het
Csde1 A G 3: 102,946,086 (GRCm39) T27A probably damaging Het
D930048N14Rik C T 11: 51,545,603 (GRCm39) probably benign Het
Depdc7 A T 2: 104,552,455 (GRCm39) Y451N possibly damaging Het
Diaph3 C A 14: 87,202,989 (GRCm39) G623* probably null Het
Dlc1 T C 8: 37,317,371 (GRCm39) T435A probably benign Het
Dock8 A G 19: 25,096,816 (GRCm39) S575G probably benign Het
Fbxw22 T A 9: 109,210,790 (GRCm39) Y407F probably benign Het
Fzd4 C A 7: 89,056,943 (GRCm39) A330E probably damaging Het
Gm17415 A G 1: 93,349,672 (GRCm39) probably benign Het
Gnat1 C T 9: 107,556,633 (GRCm39) probably null Het
Gtf3c4 T C 2: 28,725,081 (GRCm39) Y76C probably damaging Het
Heatr5b G A 17: 79,103,939 (GRCm39) H1079Y probably benign Het
Helz T G 11: 107,577,340 (GRCm39) I1897S unknown Het
Hspa12a T C 19: 58,816,681 (GRCm39) probably null Het
Kcne1 G T 16: 92,145,534 (GRCm39) F103L probably benign Het
Lrrc20 A T 10: 61,383,874 (GRCm39) S94C probably damaging Het
Lrrc8a A G 2: 30,147,111 (GRCm39) T642A probably benign Het
Ly6g5b A G 17: 35,333,494 (GRCm39) L106P probably benign Het
Lyst A G 13: 13,810,423 (GRCm39) S698G probably benign Het
Ndrg1 A G 15: 66,802,900 (GRCm39) V334A probably benign Het
Neb A T 2: 52,116,545 (GRCm39) Y964* probably null Het
Or4c123 T C 2: 89,126,689 (GRCm39) probably benign Het
Or8k3 A T 2: 86,058,973 (GRCm39) I114N possibly damaging Het
Parp10 A G 15: 76,125,588 (GRCm39) F497L probably damaging Het
Pdss1 A G 2: 22,825,589 (GRCm39) M343V possibly damaging Het
Phactr3 C T 2: 177,920,855 (GRCm39) T231I probably benign Het
Plekhh2 A T 17: 84,890,980 (GRCm39) probably benign Het
Ppp1r12c A C 7: 4,489,351 (GRCm39) probably null Het
Prdm2 G T 4: 142,860,218 (GRCm39) P1024H probably damaging Het
Prkacb A T 3: 146,461,448 (GRCm39) M1K probably null Het
Prkdc C A 16: 15,653,030 (GRCm39) P3835Q probably damaging Het
Rps27a T C 11: 29,496,353 (GRCm39) T87A probably benign Het
Ryr2 T A 13: 11,814,723 (GRCm39) E683V possibly damaging Het
Sbk2 A G 7: 4,960,528 (GRCm39) L214P probably damaging Het
Sema4g A G 19: 44,985,835 (GRCm39) S250G probably benign Het
Slc27a6 T A 18: 58,742,281 (GRCm39) D498E probably benign Het
Tas2r134 T A 2: 51,517,759 (GRCm39) Y79* probably null Het
Tie1 T C 4: 118,333,295 (GRCm39) D857G probably damaging Het
Tnk2 A G 16: 32,499,498 (GRCm39) N432S probably damaging Het
Tubg2 C A 11: 101,049,883 (GRCm39) D176E probably benign Het
Ugt2b34 A T 5: 87,039,264 (GRCm39) W466R probably damaging Het
Usp47 T A 7: 111,687,118 (GRCm39) M692K possibly damaging Het
Vmn2r106 T C 17: 20,499,807 (GRCm39) K143E probably benign Het
Vmn2r118 G A 17: 55,900,000 (GRCm39) L635F probably benign Het
Vmn2r16 C T 5: 109,510,267 (GRCm39) probably benign Het
Vmn2r76 A T 7: 85,874,910 (GRCm39) M689K probably benign Het
Xkr6 T C 14: 64,056,325 (GRCm39) Y79H probably benign Het
Zdhhc6 A G 19: 55,298,186 (GRCm39) F224L probably benign Het
Zfp493 T G 13: 67,934,921 (GRCm39) I291M probably benign Het
Other mutations in Tarbp1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00985:Tarbp1 APN 8 127,185,900 (GRCm39) missense probably damaging 1.00
IGL01475:Tarbp1 APN 8 127,160,701 (GRCm39) missense probably benign 0.03
IGL01688:Tarbp1 APN 8 127,174,290 (GRCm39) missense probably damaging 1.00
IGL01772:Tarbp1 APN 8 127,173,970 (GRCm39) splice site probably benign
IGL02402:Tarbp1 APN 8 127,177,567 (GRCm39) splice site probably benign
IGL02899:Tarbp1 APN 8 127,180,583 (GRCm39) missense probably damaging 0.96
IGL03006:Tarbp1 APN 8 127,170,881 (GRCm39) missense probably damaging 1.00
IGL03273:Tarbp1 APN 8 127,180,574 (GRCm39) missense probably damaging 1.00
PIT4280001:Tarbp1 UTSW 8 127,157,586 (GRCm39) missense probably damaging 0.96
R0048:Tarbp1 UTSW 8 127,174,269 (GRCm39) missense probably damaging 1.00
R0309:Tarbp1 UTSW 8 127,165,667 (GRCm39) splice site probably benign
R0383:Tarbp1 UTSW 8 127,174,223 (GRCm39) missense probably benign 0.00
R0455:Tarbp1 UTSW 8 127,167,612 (GRCm39) missense probably benign 0.00
R0738:Tarbp1 UTSW 8 127,165,540 (GRCm39) critical splice donor site probably null
R1345:Tarbp1 UTSW 8 127,175,069 (GRCm39) missense probably benign 0.03
R1370:Tarbp1 UTSW 8 127,175,069 (GRCm39) missense probably benign 0.03
R1617:Tarbp1 UTSW 8 127,171,007 (GRCm39) missense possibly damaging 0.47
R1628:Tarbp1 UTSW 8 127,157,599 (GRCm39) missense possibly damaging 0.78
R1702:Tarbp1 UTSW 8 127,154,957 (GRCm39) missense probably damaging 1.00
R1873:Tarbp1 UTSW 8 127,173,786 (GRCm39) missense probably damaging 1.00
R2018:Tarbp1 UTSW 8 127,154,853 (GRCm39) missense probably damaging 1.00
R2019:Tarbp1 UTSW 8 127,154,853 (GRCm39) missense probably damaging 1.00
R2060:Tarbp1 UTSW 8 127,174,333 (GRCm39) splice site probably null
R2877:Tarbp1 UTSW 8 127,154,571 (GRCm39) missense probably damaging 1.00
R3008:Tarbp1 UTSW 8 127,174,160 (GRCm39) missense possibly damaging 0.46
R3875:Tarbp1 UTSW 8 127,165,538 (GRCm39) splice site probably benign
R3905:Tarbp1 UTSW 8 127,154,891 (GRCm39) missense probably damaging 1.00
R3923:Tarbp1 UTSW 8 127,167,510 (GRCm39) missense probably benign 0.00
R4420:Tarbp1 UTSW 8 127,173,819 (GRCm39) missense possibly damaging 0.59
R4570:Tarbp1 UTSW 8 127,178,972 (GRCm39) missense probably benign 0.00
R4610:Tarbp1 UTSW 8 127,201,069 (GRCm39) missense probably damaging 1.00
R4649:Tarbp1 UTSW 8 127,173,934 (GRCm39) missense probably damaging 0.96
R4802:Tarbp1 UTSW 8 127,201,628 (GRCm39) missense possibly damaging 0.75
R4951:Tarbp1 UTSW 8 127,174,184 (GRCm39) missense possibly damaging 0.94
R4953:Tarbp1 UTSW 8 127,174,184 (GRCm39) missense possibly damaging 0.94
R5254:Tarbp1 UTSW 8 127,193,895 (GRCm39) missense probably damaging 0.96
R5255:Tarbp1 UTSW 8 127,155,709 (GRCm39) missense probably benign 0.16
R5638:Tarbp1 UTSW 8 127,177,425 (GRCm39) missense probably damaging 1.00
R5696:Tarbp1 UTSW 8 127,174,079 (GRCm39) missense probably damaging 0.98
R5707:Tarbp1 UTSW 8 127,193,883 (GRCm39) missense probably damaging 1.00
R5896:Tarbp1 UTSW 8 127,179,667 (GRCm39) missense probably benign 0.05
R6087:Tarbp1 UTSW 8 127,155,709 (GRCm39) missense probably benign 0.00
R6117:Tarbp1 UTSW 8 127,154,280 (GRCm39) missense probably benign 0.00
R6132:Tarbp1 UTSW 8 127,161,548 (GRCm39) missense probably benign 0.17
R6168:Tarbp1 UTSW 8 127,175,144 (GRCm39) missense possibly damaging 0.89
R6419:Tarbp1 UTSW 8 127,185,783 (GRCm39) missense possibly damaging 0.95
R6482:Tarbp1 UTSW 8 127,177,434 (GRCm39) missense probably benign 0.01
R6766:Tarbp1 UTSW 8 127,174,139 (GRCm39) missense probably benign 0.41
R6775:Tarbp1 UTSW 8 127,163,568 (GRCm39) missense probably benign 0.16
R6960:Tarbp1 UTSW 8 127,155,778 (GRCm39) missense possibly damaging 0.88
R7054:Tarbp1 UTSW 8 127,201,234 (GRCm39) missense possibly damaging 0.85
R7068:Tarbp1 UTSW 8 127,153,773 (GRCm39) missense probably damaging 1.00
R7454:Tarbp1 UTSW 8 127,184,416 (GRCm39) missense probably benign 0.19
R7519:Tarbp1 UTSW 8 127,160,639 (GRCm39) missense possibly damaging 0.87
R7760:Tarbp1 UTSW 8 127,179,546 (GRCm39) missense not run
R7837:Tarbp1 UTSW 8 127,201,300 (GRCm39) missense probably benign 0.00
R7882:Tarbp1 UTSW 8 127,183,232 (GRCm39) missense probably damaging 1.00
R7982:Tarbp1 UTSW 8 127,171,040 (GRCm39) missense probably damaging 1.00
R8166:Tarbp1 UTSW 8 127,153,867 (GRCm39) missense possibly damaging 0.79
R8517:Tarbp1 UTSW 8 127,170,934 (GRCm39) missense probably benign 0.29
R8838:Tarbp1 UTSW 8 127,177,569 (GRCm39) splice site probably benign
R8880:Tarbp1 UTSW 8 127,198,044 (GRCm39) missense probably damaging 1.00
R9061:Tarbp1 UTSW 8 127,173,880 (GRCm39) missense probably damaging 1.00
R9123:Tarbp1 UTSW 8 127,174,202 (GRCm39) missense possibly damaging 0.63
R9125:Tarbp1 UTSW 8 127,174,202 (GRCm39) missense possibly damaging 0.63
R9364:Tarbp1 UTSW 8 127,177,462 (GRCm39) missense probably benign 0.01
R9474:Tarbp1 UTSW 8 127,155,779 (GRCm39) missense probably benign 0.44
R9670:Tarbp1 UTSW 8 127,183,262 (GRCm39) missense probably null 1.00
Posted On 2013-11-05