Incidental Mutation 'R0927:Glra3'
ID 80515
Institutional Source Beutler Lab
Gene Symbol Glra3
Ensembl Gene ENSMUSG00000038257
Gene Name glycine receptor, alpha 3 subunit
Synonyms
MMRRC Submission 039074-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0927 (G1)
Quality Score 225
Status Not validated
Chromosome 8
Chromosomal Location 56393495-56583105 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 56578239 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 432 (E432G)
Ref Sequence ENSEMBL: ENSMUSP00000000275 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000000275]
AlphaFold Q91XP5
Predicted Effect possibly damaging
Transcript: ENSMUST00000000275
AA Change: E432G

PolyPhen 2 Score 0.651 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000000275
Gene: ENSMUSG00000038257
AA Change: E432G

DomainStartEndE-ValueType
transmembrane domain 20 42 N/A INTRINSIC
Pfam:Neur_chan_LBD 59 269 3.7e-55 PFAM
Pfam:Neur_chan_memb 276 434 1.4e-35 PFAM
PDB:2M6I|E 437 474 1e-12 PDB
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.0%
  • 20x: 93.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the ligand-gated ion channel protein family. The encoded protein is a member of the glycine receptor subfamily. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2013]
PHENOTYPE: Homozygous null mice are fertile and display decreased inflammatory pain sensitization without any gross abnormalities in the brain or spinal cord. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb8 T C 5: 24,607,317 (GRCm39) L363P probably damaging Het
Adam12 T A 7: 133,599,959 (GRCm39) H85L probably damaging Het
Adam34 A T 8: 44,104,621 (GRCm39) H341Q probably damaging Het
Adam34l A T 8: 44,078,160 (GRCm39) M688K probably benign Het
Adam7 A G 14: 68,754,133 (GRCm39) L322P probably damaging Het
Adcy5 T A 16: 34,976,613 (GRCm39) S49T probably benign Het
Arfgap2 T C 2: 91,104,150 (GRCm39) S374P probably benign Het
Arpp19 G A 9: 74,944,967 (GRCm39) probably benign Het
Baz1a T C 12: 54,941,773 (GRCm39) K1478E probably damaging Het
Cdc27 G T 11: 104,396,467 (GRCm39) A812E possibly damaging Het
Chtf8 G A 8: 107,612,150 (GRCm39) T263I probably damaging Het
Clcn6 T C 4: 148,113,849 (GRCm39) N70D probably benign Het
Cntnap5c A T 17: 58,349,553 (GRCm39) T289S possibly damaging Het
Dzip3 T C 16: 48,795,840 (GRCm39) N177S probably damaging Het
Edar G T 10: 58,465,313 (GRCm39) probably null Het
Enam T A 5: 88,641,919 (GRCm39) N244K possibly damaging Het
Fbxw10 A G 11: 62,767,770 (GRCm39) K874E probably damaging Het
Grin3b G A 10: 79,807,062 (GRCm39) R110Q probably benign Het
Herc3 T A 6: 58,845,748 (GRCm39) V423D possibly damaging Het
Ifit2 A T 19: 34,550,984 (GRCm39) T175S probably benign Het
Kcnj8 T G 6: 142,511,627 (GRCm39) I327L possibly damaging Het
Kcns2 A T 15: 34,839,242 (GRCm39) I202F probably benign Het
Kif12 T C 4: 63,087,010 (GRCm39) R305G possibly damaging Het
Limch1 A G 5: 67,154,576 (GRCm39) D362G probably damaging Het
Lrba T C 3: 86,687,540 (GRCm39) I2815T probably damaging Het
Lrrtm1 G T 6: 77,221,843 (GRCm39) M433I probably damaging Het
Myh7b A G 2: 155,462,040 (GRCm39) D312G probably damaging Het
Nrxn1 A T 17: 90,344,758 (GRCm39) I382N probably damaging Het
Nudt6 C T 3: 37,459,502 (GRCm39) R161H probably benign Het
Or10w1 T A 19: 13,631,816 (GRCm39) W8R probably damaging Het
Or11g2 A C 14: 50,856,044 (GRCm39) M122L possibly damaging Het
Or4m1 A T 14: 50,558,186 (GRCm39) Y35* probably null Het
Or7e166 C T 9: 19,624,945 (GRCm39) A274V probably benign Het
Pmf1 A T 3: 88,303,369 (GRCm39) V64D probably damaging Het
Pomgnt1 T A 4: 116,009,048 (GRCm39) V29D probably damaging Het
Pramel22 T A 4: 143,380,790 (GRCm39) H411L possibly damaging Het
Pramel26 A T 4: 143,539,378 (GRCm39) D38E probably benign Het
Prex1 C T 2: 166,428,457 (GRCm39) A925T probably benign Het
Pus3 A G 9: 35,476,327 (GRCm39) Y72C probably damaging Het
Rnf20 T C 4: 49,642,176 (GRCm39) S247P probably damaging Het
Rnf213 T A 11: 119,305,396 (GRCm39) D542E probably benign Het
Sidt1 T C 16: 44,063,895 (GRCm39) D786G probably benign Het
Sirt6 A T 10: 81,458,475 (GRCm39) D219E probably damaging Het
Slc36a2 A T 11: 55,072,411 (GRCm39) I67N probably damaging Het
Slc47a1 A G 11: 61,264,248 (GRCm39) F57S probably damaging Het
Spg11 T A 2: 121,924,968 (GRCm39) T756S probably damaging Het
Sptbn1 C A 11: 30,071,591 (GRCm39) R1447L probably damaging Het
Tcf7l2 A G 19: 55,907,387 (GRCm39) M340V probably damaging Het
Thap1 T C 8: 26,652,733 (GRCm39) V157A probably benign Het
Ubash3b G A 9: 40,934,853 (GRCm39) Q354* probably null Het
Ubtd1 G A 19: 42,020,460 (GRCm39) W68* probably null Het
Wdr64 G T 1: 175,620,647 (GRCm39) R793L probably damaging Het
Zbtb24 C T 10: 41,327,432 (GRCm39) T106I probably benign Het
Zbtb26 T C 2: 37,326,337 (GRCm39) N233S possibly damaging Het
Zcchc24 A T 14: 25,757,585 (GRCm39) N99K possibly damaging Het
Other mutations in Glra3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00835:Glra3 APN 8 56,394,012 (GRCm39) splice site probably benign
IGL01301:Glra3 APN 8 56,393,997 (GRCm39) missense probably benign 0.00
IGL01772:Glra3 APN 8 56,542,090 (GRCm39) missense probably benign 0.22
IGL02280:Glra3 APN 8 56,394,006 (GRCm39) missense possibly damaging 0.67
IGL02386:Glra3 APN 8 56,542,063 (GRCm39) missense probably benign 0.12
IGL02508:Glra3 APN 8 56,538,179 (GRCm39) missense probably benign 0.10
IGL03094:Glra3 APN 8 56,578,207 (GRCm39) missense probably benign
ANU18:Glra3 UTSW 8 56,393,997 (GRCm39) missense probably benign 0.00
R0532:Glra3 UTSW 8 56,578,111 (GRCm39) missense probably benign
R0708:Glra3 UTSW 8 56,578,399 (GRCm39) utr 3 prime probably benign
R0710:Glra3 UTSW 8 56,578,399 (GRCm39) utr 3 prime probably benign
R1125:Glra3 UTSW 8 56,492,789 (GRCm39) missense possibly damaging 0.69
R1138:Glra3 UTSW 8 56,542,011 (GRCm39) splice site probably null
R1717:Glra3 UTSW 8 56,393,942 (GRCm39) missense probably benign 0.07
R1718:Glra3 UTSW 8 56,393,942 (GRCm39) missense probably benign 0.07
R1848:Glra3 UTSW 8 56,393,942 (GRCm39) missense probably benign 0.07
R1933:Glra3 UTSW 8 56,393,942 (GRCm39) missense probably benign 0.07
R1934:Glra3 UTSW 8 56,393,942 (GRCm39) missense probably benign 0.07
R2042:Glra3 UTSW 8 56,515,494 (GRCm39) missense probably benign 0.36
R2571:Glra3 UTSW 8 56,563,516 (GRCm39) missense probably benign 0.41
R3123:Glra3 UTSW 8 56,578,244 (GRCm39) missense possibly damaging 0.94
R3124:Glra3 UTSW 8 56,578,244 (GRCm39) missense possibly damaging 0.94
R4585:Glra3 UTSW 8 56,542,028 (GRCm39) missense probably damaging 1.00
R4593:Glra3 UTSW 8 56,393,916 (GRCm39) missense probably damaging 1.00
R4981:Glra3 UTSW 8 56,444,270 (GRCm39) missense possibly damaging 0.69
R5277:Glra3 UTSW 8 56,444,242 (GRCm39) missense possibly damaging 0.79
R5356:Glra3 UTSW 8 56,393,936 (GRCm39) missense probably benign 0.00
R6214:Glra3 UTSW 8 56,444,291 (GRCm39) splice site probably null
R6941:Glra3 UTSW 8 56,393,961 (GRCm39) missense probably benign 0.00
R7976:Glra3 UTSW 8 56,565,911 (GRCm39) critical splice donor site probably null
R8354:Glra3 UTSW 8 56,578,345 (GRCm39) nonsense probably null
R8401:Glra3 UTSW 8 56,542,124 (GRCm39) missense probably damaging 1.00
R8909:Glra3 UTSW 8 56,444,159 (GRCm39) critical splice acceptor site probably null
R9399:Glra3 UTSW 8 56,542,079 (GRCm39) missense probably damaging 0.99
R9515:Glra3 UTSW 8 56,578,299 (GRCm39) missense probably damaging 1.00
R9598:Glra3 UTSW 8 56,393,718 (GRCm39) start gained probably benign
R9731:Glra3 UTSW 8 56,542,058 (GRCm39) missense probably damaging 1.00
R9801:Glra3 UTSW 8 56,563,563 (GRCm39) missense probably damaging 1.00
Z1176:Glra3 UTSW 8 56,515,535 (GRCm39) missense probably benign 0.12
Predicted Primers PCR Primer
(F):5'- TGAAATCCTGTATCGCTCGCCG -3'
(R):5'- TGTCAGGAATATGAAGCAGGACCCC -3'

Sequencing Primer
(F):5'- GCCGTTGTTTTTACTAAACACCTG -3'
(R):5'- CAGGGAATCTTTCTTCTGAATGC -3'
Posted On 2013-11-07