Incidental Mutation 'R0975:Vmn2r9'
ID 81058
Institutional Source Beutler Lab
Gene Symbol Vmn2r9
Ensembl Gene ENSMUSG00000091624
Gene Name vomeronasal 2, receptor 9
Synonyms EG435864
MMRRC Submission 039104-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.113) question?
Stock # R0975 (G1)
Quality Score 87
Status Not validated
Chromosome 5
Chromosomal Location 108990813-109000376 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 108991169 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Proline at position 731 (T731P)
Ref Sequence ENSEMBL: ENSMUSP00000129520 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170419]
AlphaFold K7N6Z8
Predicted Effect probably damaging
Transcript: ENSMUST00000170419
AA Change: T731P

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000129520
Gene: ENSMUSG00000091624
AA Change: T731P

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:ANF_receptor 77 412 8.1e-29 PFAM
Pfam:NCD3G 507 561 2.3e-16 PFAM
Pfam:7tm_3 592 829 3.4e-54 PFAM
Coding Region Coverage
  • 1x: 99.5%
  • 3x: 98.9%
  • 10x: 97.6%
  • 20x: 95.8%
Validation Efficiency 98% (52/53)
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam34l A G 8: 44,078,155 (GRCm39) F690L probably benign Het
Ampd2 T C 3: 107,984,437 (GRCm39) Y464C probably damaging Het
Arap2 A T 5: 62,888,229 (GRCm39) probably benign Het
Arhgap5 T G 12: 52,563,927 (GRCm39) N299K possibly damaging Het
Atl3 G A 19: 7,498,500 (GRCm39) W210* probably null Het
Bag1 T C 4: 40,937,152 (GRCm39) N320D probably benign Het
Ccdc39 T C 3: 33,898,274 (GRCm39) N24D probably damaging Het
Ccdc88b G A 19: 6,823,993 (GRCm39) P1420L probably damaging Het
Cdr2 G A 7: 120,557,614 (GRCm39) P304S probably benign Het
Col20a1 A T 2: 180,648,619 (GRCm39) I969F possibly damaging Het
Coro1c C G 5: 114,020,182 (GRCm39) R11P probably damaging Het
Cracd T C 5: 77,004,165 (GRCm39) probably benign Het
Cul7 T A 17: 46,974,116 (GRCm39) L1467H probably damaging Het
Cyp2c67 T G 19: 39,597,622 (GRCm39) K459Q possibly damaging Het
Cyp2c68 T C 19: 39,691,802 (GRCm39) T374A possibly damaging Het
Efcab6 T A 15: 83,857,532 (GRCm39) N289I probably benign Het
Elmo1 T A 13: 20,435,307 (GRCm39) I126N probably damaging Het
Esr2 C T 12: 76,192,082 (GRCm39) M315I possibly damaging Het
Fbxw14 T A 9: 109,100,307 (GRCm39) N449I probably benign Het
Frmpd1 C T 4: 45,279,000 (GRCm39) T575I probably benign Het
Gm14403 T G 2: 177,201,217 (GRCm39) N145K probably damaging Het
Gnl2 A G 4: 124,942,171 (GRCm39) D392G probably damaging Het
Hmcn1 A C 1: 150,453,128 (GRCm39) S5396A probably benign Het
Hoxd12 G T 2: 74,506,278 (GRCm39) R230L probably damaging Het
Khsrp T A 17: 57,334,066 (GRCm39) D154V possibly damaging Het
Klhl28 C T 12: 64,998,462 (GRCm39) R344H possibly damaging Het
Klhl3 C T 13: 58,161,677 (GRCm39) V473M possibly damaging Het
Larp1b A G 3: 40,924,925 (GRCm39) E134G probably damaging Het
Mcm9 G A 10: 53,414,742 (GRCm39) Q113* probably null Het
Mug1 A T 6: 121,855,498 (GRCm39) D944V probably damaging Het
Myh6 A G 14: 55,190,826 (GRCm39) S950P probably damaging Het
Nfix G A 8: 85,453,155 (GRCm39) R300C probably damaging Het
Or1n1b C A 2: 36,780,562 (GRCm39) M99I possibly damaging Het
Or5k14 T A 16: 58,693,513 (GRCm39) probably null Het
Plcb4 T C 2: 135,829,832 (GRCm39) probably benign Het
Pomt1 T A 2: 32,143,907 (GRCm39) probably null Het
Prpf8 T C 11: 75,399,500 (GRCm39) probably benign Het
Rad9b C T 5: 122,472,320 (GRCm39) probably null Het
Recql5 A C 11: 115,814,082 (GRCm39) D240E probably damaging Het
Sec31a A C 5: 100,543,763 (GRCm39) probably null Het
Slc5a4b A G 10: 75,917,241 (GRCm39) V265A probably benign Het
Snx29 A T 16: 11,165,735 (GRCm39) D7V possibly damaging Het
Stk31 C G 6: 49,400,343 (GRCm39) D389E probably damaging Het
Tmeff2 T C 1: 50,977,364 (GRCm39) probably benign Het
Tmem131 C T 1: 36,893,966 (GRCm39) A146T probably damaging Het
Tmem63c T A 12: 87,121,843 (GRCm39) probably benign Het
Tonsl T A 15: 76,523,132 (GRCm39) D119V probably damaging Het
Trmt10a G A 3: 137,862,570 (GRCm39) E287K probably benign Het
Vmn1r192 T A 13: 22,371,633 (GRCm39) M196L probably damaging Het
Wfdc6b G A 2: 164,455,705 (GRCm39) M11I probably damaging Het
Ypel1 T A 16: 16,925,077 (GRCm39) T32S probably benign Het
Zfp827 A G 8: 79,787,814 (GRCm39) T327A probably benign Het
Other mutations in Vmn2r9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00920:Vmn2r9 APN 5 108,995,890 (GRCm39) missense possibly damaging 0.79
IGL00972:Vmn2r9 APN 5 108,996,903 (GRCm39) missense probably benign 0.02
IGL01102:Vmn2r9 APN 5 108,990,811 (GRCm39) splice site probably null
IGL01892:Vmn2r9 APN 5 108,995,700 (GRCm39) missense probably damaging 1.00
IGL02086:Vmn2r9 APN 5 108,995,433 (GRCm39) missense probably damaging 1.00
IGL02118:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02119:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02120:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02121:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02123:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02131:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02132:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02171:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02185:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02186:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02346:Vmn2r9 APN 5 108,990,850 (GRCm39) missense probably benign 0.07
IGL02508:Vmn2r9 APN 5 108,996,067 (GRCm39) missense possibly damaging 0.70
IGL02815:Vmn2r9 APN 5 108,990,856 (GRCm39) missense possibly damaging 0.69
IGL03077:Vmn2r9 APN 5 108,996,173 (GRCm39) splice site probably benign
IGL03269:Vmn2r9 APN 5 108,995,820 (GRCm39) missense probably damaging 1.00
IGL03293:Vmn2r9 APN 5 108,995,997 (GRCm39) missense probably damaging 1.00
R0112:Vmn2r9 UTSW 5 108,990,991 (GRCm39) missense probably damaging 1.00
R0328:Vmn2r9 UTSW 5 108,995,405 (GRCm39) missense probably benign 0.11
R0382:Vmn2r9 UTSW 5 108,995,463 (GRCm39) missense probably damaging 1.00
R0521:Vmn2r9 UTSW 5 108,996,154 (GRCm39) nonsense probably null
R1216:Vmn2r9 UTSW 5 108,995,440 (GRCm39) missense probably damaging 1.00
R1458:Vmn2r9 UTSW 5 108,996,850 (GRCm39) missense probably benign 0.44
R1469:Vmn2r9 UTSW 5 108,991,694 (GRCm39) missense probably benign
R1469:Vmn2r9 UTSW 5 108,991,694 (GRCm39) missense probably benign
R1704:Vmn2r9 UTSW 5 108,994,266 (GRCm39) missense probably damaging 1.00
R1967:Vmn2r9 UTSW 5 108,995,388 (GRCm39) missense probably benign 0.03
R1991:Vmn2r9 UTSW 5 108,994,305 (GRCm39) missense probably damaging 0.99
R2410:Vmn2r9 UTSW 5 108,996,123 (GRCm39) missense probably damaging 1.00
R3419:Vmn2r9 UTSW 5 108,994,299 (GRCm39) missense probably damaging 0.96
R3852:Vmn2r9 UTSW 5 108,995,997 (GRCm39) missense probably damaging 1.00
R3873:Vmn2r9 UTSW 5 108,995,701 (GRCm39) missense probably benign 0.14
R3905:Vmn2r9 UTSW 5 108,995,785 (GRCm39) missense probably benign 0.37
R3908:Vmn2r9 UTSW 5 108,995,785 (GRCm39) missense probably benign 0.37
R3921:Vmn2r9 UTSW 5 108,996,921 (GRCm39) missense probably benign
R4156:Vmn2r9 UTSW 5 108,995,743 (GRCm39) missense possibly damaging 0.64
R4477:Vmn2r9 UTSW 5 108,994,143 (GRCm39) missense probably benign
R4478:Vmn2r9 UTSW 5 108,994,143 (GRCm39) missense probably benign
R4544:Vmn2r9 UTSW 5 108,995,551 (GRCm39) missense probably benign 0.00
R4546:Vmn2r9 UTSW 5 108,995,551 (GRCm39) missense probably benign 0.00
R4627:Vmn2r9 UTSW 5 108,995,463 (GRCm39) missense probably damaging 1.00
R5215:Vmn2r9 UTSW 5 108,994,351 (GRCm39) missense probably benign 0.03
R5361:Vmn2r9 UTSW 5 108,995,929 (GRCm39) missense probably damaging 1.00
R5587:Vmn2r9 UTSW 5 108,995,427 (GRCm39) missense probably damaging 1.00
R6054:Vmn2r9 UTSW 5 108,996,126 (GRCm39) missense probably damaging 0.99
R6106:Vmn2r9 UTSW 5 108,992,902 (GRCm39) missense probably benign
R6125:Vmn2r9 UTSW 5 108,990,836 (GRCm39) missense probably benign 0.01
R6137:Vmn2r9 UTSW 5 108,996,882 (GRCm39) missense probably benign 0.00
R6920:Vmn2r9 UTSW 5 108,996,912 (GRCm39) missense possibly damaging 0.72
R7579:Vmn2r9 UTSW 5 108,992,948 (GRCm39) missense probably damaging 1.00
R8683:Vmn2r9 UTSW 5 108,996,873 (GRCm39) missense probably benign
R8964:Vmn2r9 UTSW 5 108,996,031 (GRCm39) missense probably benign 0.05
R9022:Vmn2r9 UTSW 5 108,992,923 (GRCm39) missense possibly damaging 0.90
R9118:Vmn2r9 UTSW 5 108,990,937 (GRCm39) missense probably damaging 0.99
R9125:Vmn2r9 UTSW 5 108,996,047 (GRCm39) missense
R9240:Vmn2r9 UTSW 5 108,996,099 (GRCm39) missense possibly damaging 0.78
R9327:Vmn2r9 UTSW 5 108,996,841 (GRCm39) missense probably damaging 0.96
R9412:Vmn2r9 UTSW 5 108,991,484 (GRCm39) missense probably damaging 1.00
R9499:Vmn2r9 UTSW 5 108,995,584 (GRCm39) missense probably damaging 1.00
R9757:Vmn2r9 UTSW 5 108,995,908 (GRCm39) missense possibly damaging 0.87
R9790:Vmn2r9 UTSW 5 108,995,409 (GRCm39) missense probably damaging 0.99
R9791:Vmn2r9 UTSW 5 108,995,409 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TAGCAAGCCTGCACTAGAAGCCAAG -3'
(R):5'- TCAAGCTCACTACTCCAGGGAGAAG -3'

Sequencing Primer
(F):5'- AAGGTGATCCAGACACTGC -3'
(R):5'- CTACTCCAGGGAGAAGGATGAG -3'
Posted On 2013-11-07