Mutagenetix > Incidental Mutation

Incidental Mutation 'R0012:Hmgb4'

8159

Institutional Source

Beutler Lab

Gene Symbol

Hmgb4

Ensembl Gene

ENSMUSG00000048686

Gene Name

high-mobility group box 4

Synonyms

1700001F22Rik

MMRRC Submission

038307-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.131) question?

Stock #

R0012 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

128154005-128154688 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 128154518 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 17 (I17F)

Ref Sequence

ENSEMBL: ENSMUSP00000059625 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053830] [ENSMUST00000184063]

AlphaFold

Q6P8W9

Predicted Effect

probably damaging
Transcript: ENSMUST00000053830
AA Change: I17F

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000059625
Gene: ENSMUSG00000048686
AA Change: I17F

Domain	Start	End	E-Value	Type
HMG	8	80	7.01e-17	SMART
HMG	92	162	3.99e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129619

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131581

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144298

Predicted Effect

probably benign
Transcript: ENSMUST00000184063

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 78.7%
3x: 69.0%
10x: 44.7%
20x: 26.0%

Validation Efficiency

91% (95/104)

Allele List at MGI

Other mutations in this stock

Total: 36 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adap1	A	G	5: 139,293,489 (GRCm39)		probably benign	Het
Bnip3	A	G	7: 138,500,401 (GRCm39)		probably benign	Het
Brwd1	A	C	16: 95,860,852 (GRCm39)	S311R	probably damaging	Het
C2cd3	G	A	7: 100,067,729 (GRCm39)	V871M	possibly damaging	Het
Chd2	G	T	7: 73,105,267 (GRCm39)	T192K	probably damaging	Het
Chrna10	T	C	7: 101,764,264 (GRCm39)	N40S	possibly damaging	Het
Copb1	T	A	7: 113,836,643 (GRCm39)	K366N	probably damaging	Het
Dpysl4	T	G	7: 138,677,799 (GRCm39)	I412S	probably benign	Het
Fat2	A	G	11: 55,153,697 (GRCm39)	V3505A	probably benign	Het
Fbxo24	A	G	5: 137,620,256 (GRCm39)	F101S	probably damaging	Het
Gcnt3	T	C	9: 69,941,367 (GRCm39)	I400M	probably benign	Het
Gm2962	T	A	1: 170,752,908 (GRCm39)		probably benign	Het
Gsap	T	A	5: 21,431,227 (GRCm39)		probably benign	Het
Hipk1	A	G	3: 103,670,996 (GRCm39)	M467T	probably damaging	Het
Ints15	A	G	5: 143,299,937 (GRCm39)	L137P	probably damaging	Het
Kif17	T	G	4: 138,021,059 (GRCm39)	S606A	probably damaging	Het
Lypd4	A	G	7: 24,564,757 (GRCm39)	L127P	probably damaging	Het
Lyst	A	G	13: 13,862,279 (GRCm39)	H2605R	probably benign	Het
Map3k4	A	G	17: 12,457,076 (GRCm39)	S1289P	probably damaging	Het
Mob1b	G	A	5: 88,903,943 (GRCm39)		probably benign	Het
Mthfd2l	A	T	5: 91,109,242 (GRCm39)	H224L	probably damaging	Het
Nectin2	T	C	7: 19,464,669 (GRCm39)		probably benign	Het
Rae1	T	A	2: 172,844,466 (GRCm39)	F4I	unknown	Het
Ralgapa2	A	G	2: 146,254,672 (GRCm39)	Y821H	probably benign	Het
Sharpin	G	T	15: 76,232,543 (GRCm39)	P156T	possibly damaging	Het
Slc38a4	C	T	15: 96,897,510 (GRCm39)	R435H	probably damaging	Het
Snrnp200	T	C	2: 127,070,469 (GRCm39)	V1061A	probably benign	Het
Suclg1	A	G	6: 73,247,980 (GRCm39)	T234A	possibly damaging	Het
Tet2	T	C	3: 133,182,319 (GRCm39)	Y1215C	probably damaging	Het
Tjp1	A	G	7: 64,979,523 (GRCm39)		probably benign	Het
Tnpo3	T	C	6: 29,589,176 (GRCm39)	E58G	probably damaging	Het
Trp53bp2	T	A	1: 182,272,283 (GRCm39)	M464K	probably damaging	Het
Trpm1	A	G	7: 63,918,339 (GRCm39)	S560G	possibly damaging	Het
Unc80	T	C	1: 66,546,550 (GRCm39)	S541P	probably damaging	Het
Ushbp1	T	C	8: 71,847,684 (GRCm39)		probably benign	Het
Zfp644	T	G	5: 106,782,909 (GRCm39)	E1155A	probably benign	Het

Other mutations in Hmgb4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00559:Hmgb4	APN	4	128,154,082 (GRCm39)	missense	probably benign	0.00
IGL01701:Hmgb4	APN	4	128,154,166 (GRCm39)	missense	probably benign	0.01
IGL01805:Hmgb4	APN	4	128,154,015 (GRCm39)	intron	probably benign
IGL02752:Hmgb4	APN	4	128,154,134 (GRCm39)	missense	probably damaging	0.97
IGL02945:Hmgb4	APN	4	128,154,387 (GRCm39)	nonsense	probably null
IGL03210:Hmgb4	APN	4	128,154,535 (GRCm39)	missense	probably benign	0.18
R0012:Hmgb4	UTSW	4	128,154,518 (GRCm39)	missense	probably damaging	0.99
R2178:Hmgb4	UTSW	4	128,154,275 (GRCm39)	missense	probably damaging	1.00
R6565:Hmgb4	UTSW	4	128,154,388 (GRCm39)	missense	probably benign	0.29
R7454:Hmgb4	UTSW	4	128,154,199 (GRCm39)	missense	probably damaging	1.00

Posted On

2012-11-20