Incidental Mutation 'R0925:Cdc27'
| ID |
83160 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cdc27
|
| Ensembl Gene |
ENSMUSG00000020687 |
| Gene Name |
cell division cycle 27 |
| Synonyms |
APC3 |
| MMRRC Submission |
039072-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.968)
|
| Stock # |
R0925 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
11 |
| Chromosomal Location |
104393571-104441446 bp(-) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
A to G
at 104416875 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000102575
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000093923]
[ENSMUST00000106961]
[ENSMUST00000106962]
|
| AlphaFold |
A2A6Q5 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000093923
|
| SMART Domains |
Protein: ENSMUSP00000091452
Gene: ENSMUSG00000020687
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apc3
|
17 |
95 |
2.2e-23 |
PFAM |
|
TPR
|
115 |
148 |
4.45e-2 |
SMART |
|
low complexity region
|
349 |
362 |
N/A |
INTRINSIC |
|
TPR
|
500 |
533 |
1.33e1 |
SMART |
|
TPR
|
568 |
601 |
2.91e-6 |
SMART |
|
TPR
|
602 |
635 |
7.06e-5 |
SMART |
|
TPR
|
636 |
669 |
3.96e-8 |
SMART |
|
TPR
|
670 |
703 |
7.45e-4 |
SMART |
|
TPR
|
704 |
737 |
6.92e1 |
SMART |
|
TPR
|
738 |
771 |
1.17e-1 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000106961
|
| SMART Domains |
Protein: ENSMUSP00000102574
Gene: ENSMUSG00000020687
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Apc3
|
17 |
95 |
1.9e-23 |
PFAM |
|
Pfam:TPR_2
|
115 |
148 |
9.2e-5 |
PFAM |
|
Pfam:TPR_1
|
116 |
148 |
9.1e-5 |
PFAM |
|
low complexity region
|
355 |
368 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000106962
|
| SMART Domains |
Protein: ENSMUSP00000102575
Gene: ENSMUSG00000020687
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ANAPC3
|
17 |
94 |
7.7e-25 |
PFAM |
|
TPR
|
115 |
148 |
4.45e-2 |
SMART |
|
low complexity region
|
355 |
368 |
N/A |
INTRINSIC |
|
TPR
|
506 |
539 |
1.33e1 |
SMART |
|
TPR
|
574 |
607 |
2.91e-6 |
SMART |
|
TPR
|
608 |
641 |
7.06e-5 |
SMART |
|
TPR
|
642 |
675 |
3.96e-8 |
SMART |
|
TPR
|
676 |
709 |
7.45e-4 |
SMART |
|
TPR
|
710 |
743 |
6.92e1 |
SMART |
|
TPR
|
744 |
777 |
1.17e-1 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.9%
- 10x: 97.5%
- 20x: 95.7%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene shares strong similarity with Saccharomyces cerevisiae protein Cdc27, and the gene product of Schizosaccharomyces pombe nuc 2. This protein is a component of the anaphase-promoting complex (APC), which is composed of eight protein subunits and is highly conserved in eukaryotic cells. This complex catalyzes the formation of cyclin B-ubiquitin conjugate, which is responsible for the ubiquitin-mediated proteolysis of B-type cyclins. The protein encoded by this gene and three other members of the APC complex contain tetratricopeptide (TPR) repeats, which are important for protein-protein interactions. This protein was shown to interact with mitotic checkpoint proteins including Mad2, p55CDC and BUBR1, and it may thus be involved in controlling the timing of mitosis. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 2, 22 and Y. [provided by RefSeq, May 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 37 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam34l |
T |
C |
8: 44,079,340 (GRCm39) |
I295V |
probably benign |
Het |
| Adam5 |
T |
C |
8: 25,302,441 (GRCm39) |
Q101R |
probably benign |
Het |
| C2cd4c |
T |
C |
10: 79,448,584 (GRCm39) |
N188D |
probably benign |
Het |
| Cdh11 |
T |
A |
8: 103,361,356 (GRCm39) |
I661L |
probably damaging |
Het |
| Cimip1 |
T |
A |
2: 173,367,867 (GRCm39) |
S47T |
probably benign |
Het |
| Csmd1 |
A |
G |
8: 16,760,634 (GRCm39) |
I167T |
probably benign |
Het |
| Dennd3 |
T |
G |
15: 73,405,284 (GRCm39) |
F346V |
probably damaging |
Het |
| Dis3l |
A |
T |
9: 64,248,412 (GRCm39) |
M1K |
probably null |
Het |
| Dnajb6 |
A |
T |
5: 29,957,398 (GRCm39) |
K60I |
probably damaging |
Het |
| Dock10 |
T |
A |
1: 80,514,657 (GRCm39) |
H1421L |
probably benign |
Het |
| Elmod3 |
A |
T |
6: 72,545,921 (GRCm39) |
C274S |
probably damaging |
Het |
| Eme1 |
T |
C |
11: 94,541,558 (GRCm39) |
E88G |
probably damaging |
Het |
| Fam227a |
A |
T |
15: 79,505,006 (GRCm39) |
M475K |
probably benign |
Het |
| Frem2 |
T |
C |
3: 53,561,394 (GRCm39) |
I1038V |
probably benign |
Het |
| Gabpb1 |
T |
A |
2: 126,494,185 (GRCm39) |
N147Y |
probably damaging |
Het |
| Gmnc |
A |
G |
16: 26,779,173 (GRCm39) |
L278P |
probably benign |
Het |
| Gpr153 |
A |
G |
4: 152,366,331 (GRCm39) |
T299A |
probably benign |
Het |
| H2-M11 |
T |
C |
17: 36,858,353 (GRCm39) |
V49A |
probably benign |
Het |
| Hemgn |
T |
A |
4: 46,397,049 (GRCm39) |
K62N |
probably damaging |
Het |
| Hormad2 |
G |
A |
11: 4,377,297 (GRCm39) |
T47M |
probably damaging |
Het |
| Iqcf6 |
A |
G |
9: 106,504,500 (GRCm39) |
T55A |
probably benign |
Het |
| Itgam |
T |
C |
7: 127,711,410 (GRCm39) |
F705L |
probably benign |
Het |
| Klk1 |
T |
A |
7: 43,878,240 (GRCm39) |
|
probably null |
Het |
| Myo1f |
A |
T |
17: 33,797,107 (GRCm39) |
I123F |
probably damaging |
Het |
| Nup58 |
T |
C |
14: 60,457,590 (GRCm39) |
T538A |
probably damaging |
Het |
| Or52j3 |
T |
A |
7: 102,836,030 (GRCm39) |
L74* |
probably null |
Het |
| Or5p81 |
C |
T |
7: 108,267,400 (GRCm39) |
T259I |
probably benign |
Het |
| Pdzd2 |
C |
T |
15: 12,399,356 (GRCm39) |
R790H |
probably damaging |
Het |
| Pigv |
T |
C |
4: 133,389,960 (GRCm39) |
K74R |
probably benign |
Het |
| Prmt8 |
T |
C |
6: 127,674,776 (GRCm39) |
K284R |
probably benign |
Het |
| Rsl1d1 |
A |
T |
16: 11,017,553 (GRCm39) |
Y138N |
probably damaging |
Het |
| Scara5 |
AC |
ACC |
14: 66,000,167 (GRCm39) |
|
probably benign |
Het |
| Smc4 |
T |
A |
3: 68,913,548 (GRCm39) |
|
probably benign |
Het |
| Spta1 |
G |
A |
1: 174,001,992 (GRCm39) |
V41I |
possibly damaging |
Het |
| Tdrd7 |
C |
A |
4: 46,025,758 (GRCm39) |
N859K |
probably damaging |
Het |
| Vps13d |
T |
G |
4: 144,883,121 (GRCm39) |
D824A |
probably damaging |
Het |
| Wdfy2 |
A |
T |
14: 63,167,675 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Cdc27 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00505:Cdc27
|
APN |
11 |
104,412,258 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL00673:Cdc27
|
APN |
11 |
104,419,261 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00949:Cdc27
|
APN |
11 |
104,420,229 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01529:Cdc27
|
APN |
11 |
104,398,042 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01894:Cdc27
|
APN |
11 |
104,417,747 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02096:Cdc27
|
APN |
11 |
104,419,394 (GRCm39) |
splice site |
probably benign |
|
|
IGL02124:Cdc27
|
APN |
11 |
104,413,557 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02444:Cdc27
|
APN |
11 |
104,413,542 (GRCm39) |
splice site |
probably benign |
|
|
IGL02589:Cdc27
|
APN |
11 |
104,396,470 (GRCm39) |
missense |
probably benign |
0.04 |
|
IGL02851:Cdc27
|
APN |
11 |
104,417,807 (GRCm39) |
splice site |
probably benign |
|
|
IGL02861:Cdc27
|
APN |
11 |
104,413,657 (GRCm39) |
splice site |
probably benign |
|
|
IGL02952:Cdc27
|
APN |
11 |
104,408,290 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03103:Cdc27
|
APN |
11 |
104,403,806 (GRCm39) |
missense |
probably benign |
0.21 |
|
R0344:Cdc27
|
UTSW |
11 |
104,417,817 (GRCm39) |
splice site |
probably benign |
|
|
R0365:Cdc27
|
UTSW |
11 |
104,419,250 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R0366:Cdc27
|
UTSW |
11 |
104,396,474 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0426:Cdc27
|
UTSW |
11 |
104,403,853 (GRCm39) |
splice site |
probably null |
|
|
R0505:Cdc27
|
UTSW |
11 |
104,419,114 (GRCm39) |
missense |
probably benign |
|
|
R0639:Cdc27
|
UTSW |
11 |
104,422,560 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0927:Cdc27
|
UTSW |
11 |
104,396,467 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R1414:Cdc27
|
UTSW |
11 |
104,412,251 (GRCm39) |
missense |
probably benign |
0.26 |
|
R1765:Cdc27
|
UTSW |
11 |
104,425,607 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1822:Cdc27
|
UTSW |
11 |
104,413,648 (GRCm39) |
missense |
probably benign |
0.16 |
|
R2449:Cdc27
|
UTSW |
11 |
104,396,464 (GRCm39) |
missense |
probably benign |
0.03 |
|
R3404:Cdc27
|
UTSW |
11 |
104,398,026 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3405:Cdc27
|
UTSW |
11 |
104,398,026 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3406:Cdc27
|
UTSW |
11 |
104,398,026 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3776:Cdc27
|
UTSW |
11 |
104,406,263 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4037:Cdc27
|
UTSW |
11 |
104,398,033 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4385:Cdc27
|
UTSW |
11 |
104,425,640 (GRCm39) |
missense |
probably benign |
0.10 |
|
R4451:Cdc27
|
UTSW |
11 |
104,408,221 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4452:Cdc27
|
UTSW |
11 |
104,408,221 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4530:Cdc27
|
UTSW |
11 |
104,419,252 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R4956:Cdc27
|
UTSW |
11 |
104,420,221 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4988:Cdc27
|
UTSW |
11 |
104,416,950 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5098:Cdc27
|
UTSW |
11 |
104,398,113 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5130:Cdc27
|
UTSW |
11 |
104,425,600 (GRCm39) |
missense |
probably benign |
0.07 |
|
R5384:Cdc27
|
UTSW |
11 |
104,397,966 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5876:Cdc27
|
UTSW |
11 |
104,406,244 (GRCm39) |
missense |
probably benign |
0.30 |
|
R6238:Cdc27
|
UTSW |
11 |
104,419,270 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6318:Cdc27
|
UTSW |
11 |
104,419,520 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6354:Cdc27
|
UTSW |
11 |
104,425,574 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6467:Cdc27
|
UTSW |
11 |
104,413,602 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6485:Cdc27
|
UTSW |
11 |
104,396,474 (GRCm39) |
missense |
probably benign |
0.15 |
|
R7237:Cdc27
|
UTSW |
11 |
104,408,245 (GRCm39) |
missense |
probably benign |
|
|
R7315:Cdc27
|
UTSW |
11 |
104,406,270 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R7534:Cdc27
|
UTSW |
11 |
104,399,240 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7838:Cdc27
|
UTSW |
11 |
104,403,830 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8150:Cdc27
|
UTSW |
11 |
104,406,286 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8465:Cdc27
|
UTSW |
11 |
104,408,317 (GRCm39) |
missense |
probably benign |
0.06 |
|
R8935:Cdc27
|
UTSW |
11 |
104,398,026 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8978:Cdc27
|
UTSW |
11 |
104,399,211 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9336:Cdc27
|
UTSW |
11 |
104,396,496 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCCCATGTGAACCACTCAGTCAAGT -3'
(R):5'- AGACAGGAGCACCGTAGTGTCTTT -3'
Sequencing Primer
(F):5'- gttccagggcagccaag -3'
(R):5'- ACCGTAGTGTCTTTCCGCC -3'
|
| Posted On |
2013-11-08 |
Incidental Mutation