Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00790:Trmt1l'

8413

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Trmt1l

Ensembl Gene

ENSMUSG00000053286

Gene Name

tRNA methyltransferase 1 like

Synonyms

1190005F20Rik, Trm1-like

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL00790

Quality Score

Status

Chromosome

Chromosomal Location

151304293-151333912 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 151318463 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000068309 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065625] [ENSMUST00000189655]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000065625

SMART Domains

Protein: ENSMUSP00000068309
Gene: ENSMUSG00000053286

Domain	Start	End	E-Value	Type
low complexity region	5	18	N/A	INTRINSIC
low complexity region	25	70	N/A	INTRINSIC
ZnF_C2H2	116	142	7.49e0	SMART
ZnF_C2H2	181	203	2.49e-1	SMART
Pfam:TRM	220	563	6.9e-60	PFAM
Pfam:TRM	595	684	6.8e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000188179

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000188843

Predicted Effect

probably benign
Transcript: ENSMUST00000189655

SMART Domains

Protein: ENSMUSP00000140009
Gene: ENSMUSG00000053286

Domain	Start	End	E-Value	Type
ZnF_C2H2	28	50	1.1e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192826

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000198467

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that has some similarity to N2,N2-dimethylguanosine tRNA methyltransferase from other organisms. Studies of the mouse ortholog have shown that this protein plays a role in motor coordination and exploratory behavior, and it may also be involved in modulating postnatal neuronal functions. Alternatively spliced transcripts have been identified for this gene. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice homozygous for a gene trapped allele are viable and anatomically normal but display significantly impaired motor coordination and aberrant exploratory behavior. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 29 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankrd12	A	T	17: 66,291,175 (GRCm39)	N1419K	probably benign	Het
Arhgef18	A	G	8: 3,479,553 (GRCm39)	E79G	probably damaging	Het
Art4	T	A	6: 136,831,493 (GRCm39)	Q216L	probably damaging	Het
Bbs4	T	C	9: 59,231,348 (GRCm39)	D407G	probably benign	Het
Cherp	A	G	8: 73,222,090 (GRCm39)	I277T	probably damaging	Het
Cnot2	A	G	10: 116,342,976 (GRCm39)	M119T	probably benign	Het
Disp2	T	A	2: 118,616,759 (GRCm39)	C73S	probably damaging	Het
Dock4	T	C	12: 40,884,390 (GRCm39)	S1686P	probably damaging	Het
Dsc1	C	T	18: 20,227,953 (GRCm39)	G468S	probably damaging	Het
Duox2	T	A	2: 122,122,781 (GRCm39)	D551V	possibly damaging	Het
Gmip	T	A	8: 70,269,661 (GRCm39)	Y585*	probably null	Het
Gnal	A	G	18: 67,267,360 (GRCm39)		probably null	Het
Idh1	T	G	1: 65,205,281 (GRCm39)	Q228P	possibly damaging	Het
Igsf10	A	T	3: 59,226,938 (GRCm39)	I2245N	probably damaging	Het
Mrgpra4	A	T	7: 47,631,052 (GRCm39)	M183K	possibly damaging	Het
Npr2	T	A	4: 43,641,612 (GRCm39)	V472D	possibly damaging	Het
Pcdh7	A	T	5: 57,878,806 (GRCm39)	N787I	probably damaging	Het
Phf8-ps	A	G	17: 33,286,361 (GRCm39)	V147A	probably damaging	Het
Ppp1r10	A	T	17: 36,235,751 (GRCm39)	N111I	probably damaging	Het
Ppp3ca	A	G	3: 136,640,942 (GRCm39)	N508D	probably benign	Het
Rgs17	A	G	10: 5,862,624 (GRCm38)	Q25P	possibly damaging	Het
Slco6d1	T	A	1: 98,348,925 (GRCm39)		probably benign	Het
Tab3	T	A	X: 84,665,210 (GRCm39)	N591K	probably damaging	Het
Tfcp2	T	C	15: 100,411,059 (GRCm39)		probably benign	Het
Them5	A	T	3: 94,250,716 (GRCm39)	D93V	probably damaging	Het
Thoc5	T	G	11: 4,868,147 (GRCm39)	V275G	probably damaging	Het
Zdbf2	G	T	1: 63,345,673 (GRCm39)	V1351F	possibly damaging	Het
Zfp14	G	T	7: 29,738,312 (GRCm39)	Y224*	probably null	Het
Zfp606	T	G	7: 12,228,159 (GRCm39)	M702R	probably damaging	Het

Other mutations in Trmt1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02175:Trmt1l	APN	1	151,324,235 (GRCm39)	missense	probably benign	0.00
IGL02348:Trmt1l	APN	1	151,325,757 (GRCm39)	missense	probably damaging	1.00
IGL02397:Trmt1l	APN	1	151,315,282 (GRCm39)	missense	probably damaging	1.00
IGL02582:Trmt1l	APN	1	151,309,536 (GRCm39)	splice site	probably benign
IGL03150:Trmt1l	APN	1	151,329,643 (GRCm39)	missense	probably benign	0.00
IGL03220:Trmt1l	APN	1	151,316,692 (GRCm39)	splice site	probably benign
Canyonlands	UTSW	1	151,329,799 (GRCm39)	nonsense	probably null
splendiforous	UTSW	1	151,328,899 (GRCm39)	missense	probably damaging	1.00
IGL03014:Trmt1l	UTSW	1	151,333,681 (GRCm39)	missense	probably damaging	0.99
R0067:Trmt1l	UTSW	1	151,324,131 (GRCm39)	missense	probably benign	0.16
R0067:Trmt1l	UTSW	1	151,324,131 (GRCm39)	missense	probably benign	0.16
R0240:Trmt1l	UTSW	1	151,333,205 (GRCm39)	unclassified	probably benign
R0267:Trmt1l	UTSW	1	151,333,426 (GRCm39)	unclassified	probably benign
R2084:Trmt1l	UTSW	1	151,316,605 (GRCm39)	missense	probably damaging	1.00
R2206:Trmt1l	UTSW	1	151,311,594 (GRCm39)	critical splice donor site	probably null
R2338:Trmt1l	UTSW	1	151,304,710 (GRCm39)	intron	probably benign
R2408:Trmt1l	UTSW	1	151,315,267 (GRCm39)	missense	possibly damaging	0.48
R2429:Trmt1l	UTSW	1	151,309,581 (GRCm39)	missense	probably damaging	1.00
R2520:Trmt1l	UTSW	1	151,329,696 (GRCm39)	missense	probably benign	0.14
R3972:Trmt1l	UTSW	1	151,309,634 (GRCm39)	missense	possibly damaging	0.91
R4092:Trmt1l	UTSW	1	151,330,784 (GRCm39)	missense	probably benign	0.18
R4361:Trmt1l	UTSW	1	151,311,626 (GRCm39)	intron	probably benign
R4411:Trmt1l	UTSW	1	151,327,905 (GRCm39)	missense	probably benign	0.02
R4419:Trmt1l	UTSW	1	151,316,559 (GRCm39)	missense	probably damaging	0.98
R4518:Trmt1l	UTSW	1	151,324,094 (GRCm39)	nonsense	probably null
R4614:Trmt1l	UTSW	1	151,329,799 (GRCm39)	nonsense	probably null
R4617:Trmt1l	UTSW	1	151,329,799 (GRCm39)	nonsense	probably null
R4618:Trmt1l	UTSW	1	151,329,799 (GRCm39)	nonsense	probably null
R4647:Trmt1l	UTSW	1	151,333,632 (GRCm39)	missense	possibly damaging	0.86
R4653:Trmt1l	UTSW	1	151,315,320 (GRCm39)	missense	probably benign	0.00
R4734:Trmt1l	UTSW	1	151,318,388 (GRCm39)	missense	probably benign	0.32
R4873:Trmt1l	UTSW	1	151,330,755 (GRCm39)	missense	probably benign	0.04
R4875:Trmt1l	UTSW	1	151,330,755 (GRCm39)	missense	probably benign	0.04
R5026:Trmt1l	UTSW	1	151,316,627 (GRCm39)	missense	probably damaging	1.00
R5528:Trmt1l	UTSW	1	151,330,746 (GRCm39)	missense	probably benign
R5587:Trmt1l	UTSW	1	151,311,455 (GRCm39)	intron	probably benign
R5872:Trmt1l	UTSW	1	151,316,594 (GRCm39)	missense	probably damaging	1.00
R6060:Trmt1l	UTSW	1	151,333,331 (GRCm39)	missense	possibly damaging	0.78
R6169:Trmt1l	UTSW	1	151,304,704 (GRCm39)	intron	probably benign
R6333:Trmt1l	UTSW	1	151,329,685 (GRCm39)	missense	probably benign	0.15
R6906:Trmt1l	UTSW	1	151,327,926 (GRCm39)	missense	probably benign	0.03
R7269:Trmt1l	UTSW	1	151,333,539 (GRCm39)	missense	possibly damaging	0.81
R7574:Trmt1l	UTSW	1	151,316,591 (GRCm39)	missense	possibly damaging	0.95
R7740:Trmt1l	UTSW	1	151,316,639 (GRCm39)	missense	possibly damaging	0.47
R7760:Trmt1l	UTSW	1	151,318,425 (GRCm39)	missense	possibly damaging	0.93
R7984:Trmt1l	UTSW	1	151,311,489 (GRCm39)	missense	probably benign	0.02
R8257:Trmt1l	UTSW	1	151,304,629 (GRCm39)	start codon destroyed	probably null
R8286:Trmt1l	UTSW	1	151,333,543 (GRCm39)	missense	probably damaging	1.00
R8439:Trmt1l	UTSW	1	151,325,727 (GRCm39)	missense	probably benign	0.10
R8451:Trmt1l	UTSW	1	151,324,039 (GRCm39)	missense	unknown
R8514:Trmt1l	UTSW	1	151,329,742 (GRCm39)	missense	probably damaging	0.98
R9287:Trmt1l	UTSW	1	151,328,899 (GRCm39)	missense	probably damaging	1.00
R9423:Trmt1l	UTSW	1	151,325,817 (GRCm39)	missense	possibly damaging	0.90
R9622:Trmt1l	UTSW	1	151,304,710 (GRCm39)	nonsense	probably null
X0039:Trmt1l	UTSW	1	151,330,741 (GRCm39)	missense	possibly damaging	0.88
Z1176:Trmt1l	UTSW	1	151,328,864 (GRCm39)	missense	possibly damaging	0.72
Z1187:Trmt1l	UTSW	1	151,333,331 (GRCm39)	missense	possibly damaging	0.78
Z1189:Trmt1l	UTSW	1	151,333,331 (GRCm39)	missense	possibly damaging	0.78
Z1190:Trmt1l	UTSW	1	151,333,331 (GRCm39)	missense	possibly damaging	0.78
Z1192:Trmt1l	UTSW	1	151,333,331 (GRCm39)	missense	possibly damaging	0.78

Posted On

2012-12-06