Incidental Mutation 'IGL01456:Ap5z1'
ID 84783
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ap5z1
Ensembl Gene ENSMUSG00000039623
Gene Name adaptor-related protein complex 5, zeta 1 subunit
Synonyms C330006K01Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.213) question?
Stock # IGL01456
Quality Score
Status
Chromosome 5
Chromosomal Location 142449699-142464465 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 142453791 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Proline at position 175 (L175P)
Ref Sequence ENSEMBL: ENSMUSP00000143179 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038699] [ENSMUST00000196055] [ENSMUST00000197173] [ENSMUST00000198967]
AlphaFold Q3U829
Predicted Effect possibly damaging
Transcript: ENSMUST00000038699
AA Change: L175P

PolyPhen 2 Score 0.890 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000041863
Gene: ENSMUSG00000039623
AA Change: L175P

DomainStartEndE-ValueType
low complexity region 271 294 N/A INTRINSIC
Pfam:SPG48 319 437 2.9e-45 PFAM
low complexity region 579 584 N/A INTRINSIC
low complexity region 617 628 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000196055
AA Change: L175P

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000143179
Gene: ENSMUSG00000039623
AA Change: L175P

DomainStartEndE-ValueType
low complexity region 271 294 N/A INTRINSIC
Pfam:SPG48 318 758 2.6e-181 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196405
Predicted Effect probably benign
Transcript: ENSMUST00000197173
SMART Domains Protein: ENSMUSP00000142777
Gene: ENSMUSG00000039623

DomainStartEndE-ValueType
low complexity region 74 93 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000198135
Predicted Effect probably benign
Transcript: ENSMUST00000198967
SMART Domains Protein: ENSMUSP00000143040
Gene: ENSMUSG00000039623

DomainStartEndE-ValueType
low complexity region 44 54 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified by genome-wide screen for genes involved in homologous recombination DNA double-strand break repair (HR-DSBR). The encoded protein was found in a complex with other proteins that have a role in HR-DSBR. Knockdown of this gene reduced homologous recombination, and mutations in this gene were found in patients with spastic paraplegia. It was concluded that this gene likely encodes a helicase (PMID:20613862). [provided by RefSeq, Jan 2011]
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam6b T A 12: 113,455,083 (GRCm39) D633E probably benign Het
Akap13 T C 7: 75,252,595 (GRCm39) C242R probably damaging Het
Arid1b A G 17: 5,341,510 (GRCm39) E938G probably damaging Het
Arid4a A G 12: 71,114,036 (GRCm39) N208D probably benign Het
Atr A G 9: 95,832,618 (GRCm39) H2556R possibly damaging Het
Cald1 A T 6: 34,741,931 (GRCm39) D438V probably damaging Het
Dcbld2 C T 16: 58,229,236 (GRCm39) P40S possibly damaging Het
Dock8 G A 19: 25,096,863 (GRCm39) M590I possibly damaging Het
Gm1818 A T 12: 48,602,583 (GRCm39) noncoding transcript Het
Hace1 A G 10: 45,586,094 (GRCm39) probably benign Het
Igkv10-96 A G 6: 68,609,086 (GRCm39) Y70H probably benign Het
Kdm2a G T 19: 4,401,783 (GRCm39) H200Q probably damaging Het
Ldha A G 7: 46,499,602 (GRCm39) D111G possibly damaging Het
Map7 A G 10: 20,149,550 (GRCm39) E567G unknown Het
Nbeal1 G T 1: 60,269,787 (GRCm39) L375F probably damaging Het
Nectin3 T C 16: 46,279,216 (GRCm39) E254G probably benign Het
Nlrp4b A T 7: 10,448,150 (GRCm39) I118F probably benign Het
Pkhd1 A T 1: 20,269,683 (GRCm39) V3287D probably damaging Het
Ptpre T G 7: 135,271,531 (GRCm39) V375G probably damaging Het
Rabgap1 A G 2: 37,431,187 (GRCm39) E746G probably damaging Het
Sh2b2 C T 5: 136,253,321 (GRCm39) C311Y probably damaging Het
Skor1 G A 9: 63,052,772 (GRCm39) T399I probably damaging Het
Sptbn2 A G 19: 4,796,777 (GRCm39) T1792A probably damaging Het
Tiparp G T 3: 65,460,030 (GRCm39) G442* probably null Het
Tln1 G A 4: 43,543,432 (GRCm39) probably benign Het
Tmc7 C A 7: 118,146,533 (GRCm39) probably benign Het
Top2a A T 11: 98,901,856 (GRCm39) L458Q probably damaging Het
Tpte A G 8: 22,835,068 (GRCm39) probably benign Het
Unc13a G A 8: 72,097,211 (GRCm39) R1228W probably damaging Het
Vipr1 C T 9: 121,494,244 (GRCm39) T275M probably damaging Het
Vmn1r177 G T 7: 23,565,753 (GRCm39) P41Q possibly damaging Het
Vmn2r4 A T 3: 64,313,816 (GRCm39) N388K probably damaging Het
Other mutations in Ap5z1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01382:Ap5z1 APN 5 142,458,006 (GRCm39) missense probably benign 0.02
IGL01656:Ap5z1 APN 5 142,456,069 (GRCm39) missense probably benign 0.10
IGL02079:Ap5z1 APN 5 142,462,868 (GRCm39) critical splice donor site probably null
IGL02134:Ap5z1 APN 5 142,460,214 (GRCm39) missense probably benign 0.09
IGL02662:Ap5z1 APN 5 142,462,644 (GRCm39) splice site probably null
IGL02805:Ap5z1 APN 5 142,456,038 (GRCm39) unclassified probably benign
R0057:Ap5z1 UTSW 5 142,456,144 (GRCm39) unclassified probably benign
R0057:Ap5z1 UTSW 5 142,456,144 (GRCm39) unclassified probably benign
R0094:Ap5z1 UTSW 5 142,462,567 (GRCm39) missense probably benign 0.00
R0395:Ap5z1 UTSW 5 142,456,317 (GRCm39) unclassified probably benign
R0811:Ap5z1 UTSW 5 142,461,546 (GRCm39) missense probably benign 0.00
R0812:Ap5z1 UTSW 5 142,461,546 (GRCm39) missense probably benign 0.00
R1241:Ap5z1 UTSW 5 142,455,869 (GRCm39) missense probably damaging 1.00
R1248:Ap5z1 UTSW 5 142,460,255 (GRCm39) missense probably benign 0.02
R1374:Ap5z1 UTSW 5 142,456,213 (GRCm39) missense probably damaging 1.00
R1616:Ap5z1 UTSW 5 142,457,991 (GRCm39) missense probably benign 0.10
R1923:Ap5z1 UTSW 5 142,458,096 (GRCm39) missense probably benign 0.30
R2423:Ap5z1 UTSW 5 142,462,532 (GRCm39) missense probably benign 0.02
R3790:Ap5z1 UTSW 5 142,456,168 (GRCm39) missense probably benign
R4859:Ap5z1 UTSW 5 142,459,748 (GRCm39) missense possibly damaging 0.75
R4965:Ap5z1 UTSW 5 142,453,431 (GRCm39) missense probably damaging 1.00
R5147:Ap5z1 UTSW 5 142,452,265 (GRCm39) missense probably benign 0.02
R5311:Ap5z1 UTSW 5 142,453,442 (GRCm39) missense possibly damaging 0.79
R5531:Ap5z1 UTSW 5 142,453,536 (GRCm39) missense probably benign
R5569:Ap5z1 UTSW 5 142,460,206 (GRCm39) missense probably damaging 0.99
R5725:Ap5z1 UTSW 5 142,454,731 (GRCm39) missense probably damaging 1.00
R7287:Ap5z1 UTSW 5 142,459,802 (GRCm39) missense probably damaging 0.99
R7407:Ap5z1 UTSW 5 142,452,330 (GRCm39) missense probably benign 0.06
R7537:Ap5z1 UTSW 5 142,463,053 (GRCm39) missense probably benign 0.06
R7894:Ap5z1 UTSW 5 142,456,191 (GRCm39) nonsense probably null
R7894:Ap5z1 UTSW 5 142,452,039 (GRCm39) missense probably benign 0.34
R7895:Ap5z1 UTSW 5 142,456,313 (GRCm39) critical splice donor site probably null
R8022:Ap5z1 UTSW 5 142,455,904 (GRCm39) critical splice donor site probably null
R8244:Ap5z1 UTSW 5 142,459,735 (GRCm39) missense possibly damaging 0.60
R8823:Ap5z1 UTSW 5 142,460,191 (GRCm39) missense probably benign 0.19
R8867:Ap5z1 UTSW 5 142,463,011 (GRCm39) missense probably benign 0.05
R9673:Ap5z1 UTSW 5 142,463,113 (GRCm39) missense probably benign 0.32
Posted On 2013-11-11