Incidental Mutation 'R1070:Kcnk2'
| ID |
86151 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Kcnk2
|
| Ensembl Gene |
ENSMUSG00000037624 |
| Gene Name |
potassium channel, subfamily K, member 2 |
| Synonyms |
TREK-1 |
| MMRRC Submission |
039156-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.102)
|
| Stock # |
R1070 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
188940127-189134470 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
A to G
at 188988960 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000142026
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000079451]
[ENSMUST00000110920]
[ENSMUST00000180044]
[ENSMUST00000192723]
[ENSMUST00000193319]
[ENSMUST00000194172]
[ENSMUST00000194402]
|
| AlphaFold |
P97438 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000079451
|
| SMART Domains |
Protein: ENSMUSP00000078416
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ion_trans_2
|
117 |
197 |
2e-20 |
PFAM |
|
low complexity region
|
221 |
230 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans_2
|
233 |
313 |
6.8e-22 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000110920
|
| SMART Domains |
Protein: ENSMUSP00000106545
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ion_trans_2
|
102 |
183 |
2.4e-21 |
PFAM |
|
Pfam:Ion_trans_2
|
211 |
298 |
3.7e-21 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000180044
|
| SMART Domains |
Protein: ENSMUSP00000136513
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ion_trans_2
|
102 |
183 |
2.4e-21 |
PFAM |
|
Pfam:Ion_trans_2
|
211 |
298 |
3.7e-21 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192723
|
| SMART Domains |
Protein: ENSMUSP00000141849
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ion_trans_2
|
102 |
183 |
2.4e-21 |
PFAM |
|
Pfam:Ion_trans_2
|
211 |
298 |
3.7e-21 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193319
|
| SMART Domains |
Protein: ENSMUSP00000141891
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ion_trans_2
|
117 |
198 |
2.5e-21 |
PFAM |
|
Pfam:Ion_trans_2
|
226 |
313 |
3.7e-21 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194172
|
| SMART Domains |
Protein: ENSMUSP00000142176
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
57 |
76 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans_2
|
113 |
194 |
5e-20 |
PFAM |
|
low complexity region
|
216 |
231 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194402
|
| SMART Domains |
Protein: ENSMUSP00000142026
Gene: ENSMUSG00000037624
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
57 |
76 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans_2
|
113 |
194 |
1.4e-19 |
PFAM |
|
Pfam:Ion_trans_2
|
222 |
309 |
2.2e-19 |
PFAM |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.9%
- 10x: 97.6%
- 20x: 95.7%
|
| Validation Efficiency |
95% (41/43) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes one of the members of the two-pore-domain background potassium channel protein family. This type of potassium channel is formed by two homodimers that create a channel that leaks potassium out of the cell to control resting membrane potential. The channel can be opened, however, by certain anesthetics, membrane stretching, intracellular acidosis, and heat. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display increased sensitivity to pharmacologically induced seizures and ischemia. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
T |
C |
6: 128,520,263 (GRCm39) |
D1367G |
probably damaging |
Het |
| Actr3b |
A |
G |
5: 26,053,491 (GRCm39) |
|
probably benign |
Het |
| Agtr1b |
A |
T |
3: 20,369,912 (GRCm39) |
N231K |
probably benign |
Het |
| Bach1 |
T |
C |
16: 87,517,009 (GRCm39) |
S517P |
probably benign |
Het |
| Blzf1 |
A |
G |
1: 164,131,499 (GRCm39) |
|
probably benign |
Het |
| Bptf |
G |
T |
11: 106,945,881 (GRCm39) |
Q2453K |
possibly damaging |
Het |
| Gtf3c3 |
C |
T |
1: 54,456,937 (GRCm39) |
A488T |
probably damaging |
Het |
| Heatr4 |
T |
C |
12: 84,024,841 (GRCm39) |
T327A |
possibly damaging |
Het |
| Hes1 |
T |
C |
16: 29,886,101 (GRCm39) |
I235T |
probably damaging |
Het |
| Hmcn1 |
T |
A |
1: 150,565,341 (GRCm39) |
D2262V |
probably damaging |
Het |
| Ifi208 |
C |
T |
1: 173,510,610 (GRCm39) |
A255V |
probably damaging |
Het |
| Inhbe |
T |
C |
10: 127,187,382 (GRCm39) |
I11M |
probably benign |
Het |
| Ipo9 |
T |
C |
1: 135,334,281 (GRCm39) |
E315G |
possibly damaging |
Het |
| Itih1 |
G |
T |
14: 30,664,413 (GRCm39) |
|
probably benign |
Het |
| Kdm4c |
T |
A |
4: 74,291,865 (GRCm39) |
Y827* |
probably null |
Het |
| Kif5a |
T |
C |
10: 127,081,275 (GRCm39) |
T220A |
probably benign |
Het |
| Krt78 |
A |
G |
15: 101,854,728 (GRCm39) |
Y1028H |
possibly damaging |
Het |
| Ldc1 |
T |
C |
4: 130,112,949 (GRCm39) |
E149G |
probably benign |
Het |
| Mylk4 |
T |
C |
13: 32,908,801 (GRCm39) |
D333G |
probably benign |
Het |
| Net1 |
A |
T |
13: 3,962,930 (GRCm39) |
S45T |
probably benign |
Het |
| Npat |
T |
A |
9: 53,483,892 (GRCm39) |
F1403I |
probably damaging |
Het |
| Or5h25 |
A |
G |
16: 58,930,182 (GRCm39) |
S264P |
probably benign |
Het |
| Or5p57 |
T |
C |
7: 107,665,858 (GRCm39) |
D49G |
probably benign |
Het |
| Or7a35 |
C |
T |
10: 78,853,684 (GRCm39) |
P176L |
probably damaging |
Het |
| Pcif1 |
T |
C |
2: 164,731,058 (GRCm39) |
Y404H |
probably benign |
Het |
| Pdzd2 |
A |
G |
15: 12,390,052 (GRCm39) |
|
probably null |
Het |
| Rab3a |
A |
G |
8: 71,209,840 (GRCm39) |
N40S |
probably damaging |
Het |
| Raf1 |
T |
C |
6: 115,614,660 (GRCm39) |
N74D |
probably benign |
Het |
| Rap1gap2 |
A |
G |
11: 74,327,853 (GRCm39) |
V139A |
possibly damaging |
Het |
| Rdh12 |
T |
C |
12: 79,260,522 (GRCm39) |
L206P |
probably damaging |
Het |
| Rimoc1 |
C |
A |
15: 4,015,848 (GRCm39) |
V239F |
probably benign |
Het |
| Sdhb |
T |
C |
4: 140,698,547 (GRCm39) |
|
probably benign |
Het |
| Sned1 |
G |
A |
1: 93,209,376 (GRCm39) |
V830M |
possibly damaging |
Het |
| Strip1 |
T |
C |
3: 107,534,724 (GRCm39) |
E102G |
possibly damaging |
Het |
| Sult2a8 |
T |
A |
7: 14,147,698 (GRCm39) |
I198F |
probably damaging |
Het |
| Tars3 |
T |
C |
7: 65,305,444 (GRCm39) |
S223P |
probably damaging |
Het |
| Ugt2b38 |
T |
G |
5: 87,560,232 (GRCm39) |
N361H |
probably damaging |
Het |
| Vcam1 |
C |
T |
3: 115,904,552 (GRCm39) |
V732M |
possibly damaging |
Het |
| Vmn2r79 |
T |
C |
7: 86,652,681 (GRCm39) |
Y458H |
probably damaging |
Het |
|
| Other mutations in Kcnk2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00955:Kcnk2
|
APN |
1 |
188,975,211 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL01100:Kcnk2
|
APN |
1 |
189,072,133 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01872:Kcnk2
|
APN |
1 |
188,988,780 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01929:Kcnk2
|
APN |
1 |
189,072,227 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02643:Kcnk2
|
APN |
1 |
188,990,976 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
IGL03056:Kcnk2
|
APN |
1 |
189,027,908 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL03340:Kcnk2
|
APN |
1 |
189,027,878 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R0041:Kcnk2
|
UTSW |
1 |
189,027,888 (GRCm39) |
missense |
probably benign |
0.44 |
|
R0041:Kcnk2
|
UTSW |
1 |
189,027,888 (GRCm39) |
missense |
probably benign |
0.44 |
|
R0279:Kcnk2
|
UTSW |
1 |
188,942,169 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R0569:Kcnk2
|
UTSW |
1 |
189,071,998 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0645:Kcnk2
|
UTSW |
1 |
188,988,927 (GRCm39) |
splice site |
probably null |
|
|
R1449:Kcnk2
|
UTSW |
1 |
189,072,223 (GRCm39) |
missense |
probably benign |
0.31 |
|
R2401:Kcnk2
|
UTSW |
1 |
189,072,214 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R4418:Kcnk2
|
UTSW |
1 |
188,988,924 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4923:Kcnk2
|
UTSW |
1 |
189,072,133 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5782:Kcnk2
|
UTSW |
1 |
188,988,776 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5845:Kcnk2
|
UTSW |
1 |
189,009,918 (GRCm39) |
intron |
probably benign |
|
|
R6140:Kcnk2
|
UTSW |
1 |
188,942,104 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6240:Kcnk2
|
UTSW |
1 |
188,975,179 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6881:Kcnk2
|
UTSW |
1 |
188,942,187 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7990:Kcnk2
|
UTSW |
1 |
188,942,102 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8046:Kcnk2
|
UTSW |
1 |
188,990,933 (GRCm39) |
critical splice donor site |
probably null |
|
|
R8322:Kcnk2
|
UTSW |
1 |
189,072,046 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9099:Kcnk2
|
UTSW |
1 |
188,991,072 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9482:Kcnk2
|
UTSW |
1 |
188,988,891 (GRCm39) |
frame shift |
probably null |
|
|
R9484:Kcnk2
|
UTSW |
1 |
188,988,891 (GRCm39) |
frame shift |
probably null |
|
|
R9576:Kcnk2
|
UTSW |
1 |
188,988,891 (GRCm39) |
frame shift |
probably null |
|
|
R9577:Kcnk2
|
UTSW |
1 |
188,988,891 (GRCm39) |
frame shift |
probably null |
|
|
R9578:Kcnk2
|
UTSW |
1 |
188,988,891 (GRCm39) |
frame shift |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AAGCCTTACCTGCCACGTAGTCTC -3'
(R):5'- TGTCTGAAGTCACTGGCTCCAACC -3'
Sequencing Primer
(F):5'- TCCAAATCCAATGGTCGTCAGAG -3'
(R):5'- CGGATGAGCAAATGCACTAC -3'
|
| Posted On |
2013-11-18 |
Incidental Mutation