Incidental Mutation 'IGL01503:B3gnt5'
| ID |
88955 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
B3gnt5
|
| Ensembl Gene |
ENSMUSG00000022686 |
| Gene Name |
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.547)
|
| Stock # |
IGL01503
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
16 |
| Chromosomal Location |
19760208-19772753 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to C
at 19769781 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Serine
at position 250
(Y250S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000126157
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000079780]
[ENSMUST00000119468]
[ENSMUST00000121344]
[ENSMUST00000164397]
|
| AlphaFold |
Q8BGY6 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000079780
AA Change: Y250S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000078712
Gene: ENSMUSG00000022686
AA Change: Y250S
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
12 |
34 |
N/A |
INTRINSIC |
|
Pfam:Galactosyl_T
|
100 |
299 |
2e-49 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000119468
AA Change: Y250S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000113145
Gene: ENSMUSG00000022686
AA Change: Y250S
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
12 |
34 |
N/A |
INTRINSIC |
|
Pfam:Galactosyl_T
|
100 |
299 |
2e-49 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000121344
AA Change: Y250S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000112624
Gene: ENSMUSG00000022686
AA Change: Y250S
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
12 |
34 |
N/A |
INTRINSIC |
|
Pfam:Galactosyl_T
|
100 |
299 |
2e-49 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131557
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152845
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000164397
AA Change: Y250S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000126157
Gene: ENSMUSG00000022686
AA Change: Y250S
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
12 |
34 |
N/A |
INTRINSIC |
|
Pfam:Galactosyl_T
|
100 |
299 |
2e-49 |
PFAM |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the beta-1,3-N-acetylglucosaminyltransferase family. This enzyme is a type II membrane protein. It exhibits strong activity to transfer GlcNAc to glycolipid substrates and is identified as the most likely candidate for lactotriaosylceramide synthase. This enzyme is essential for the expression of Lewis X epitopes on glycolipids. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice may show variable types of lethality or no lethality depending on the allele. Mice homozygous for 3 alleles show B cell abnormalities. Mice homozygous or heterozygous for 2 allele show reduced fertility. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1110057P08Rik |
T |
A |
16: 89,174,869 (GRCm38) |
Y26* |
probably null |
Het |
| Arpc1a |
T |
C |
5: 145,096,154 (GRCm38) |
V91A |
probably damaging |
Het |
| Atp2a1 |
T |
A |
7: 126,448,578 (GRCm38) |
I687F |
probably damaging |
Het |
| Brip1 |
A |
G |
11: 86,061,877 (GRCm38) |
V1026A |
probably benign |
Het |
| C1s2 |
T |
C |
6: 124,625,653 (GRCm38) |
D527G |
probably damaging |
Het |
| Chrna5 |
T |
A |
9: 54,998,171 (GRCm38) |
|
probably benign |
Het |
| Cltc |
C |
A |
11: 86,695,700 (GRCm38) |
|
probably benign |
Het |
| Dgkh |
T |
G |
14: 78,616,270 (GRCm38) |
I439L |
possibly damaging |
Het |
| Dnajc16 |
G |
A |
4: 141,763,697 (GRCm38) |
T714I |
possibly damaging |
Het |
| Fam13a |
A |
T |
6: 58,956,080 (GRCm38) |
I349N |
probably damaging |
Het |
| Fig4 |
C |
T |
10: 41,256,518 (GRCm38) |
D431N |
probably benign |
Het |
| Gabra4 |
A |
T |
5: 71,641,086 (GRCm38) |
N183K |
possibly damaging |
Het |
| Ggt5 |
C |
T |
10: 75,610,110 (GRCm38) |
|
probably benign |
Het |
| Gm436 |
T |
A |
4: 144,674,567 (GRCm38) |
I116F |
probably damaging |
Het |
| Hdac6 |
A |
G |
X: 7,932,179 (GRCm38) |
L798P |
probably damaging |
Het |
| Hectd4 |
T |
C |
5: 121,318,651 (GRCm38) |
V2030A |
probably benign |
Het |
| Hecw2 |
A |
G |
1: 53,826,961 (GRCm38) |
Y1514H |
probably damaging |
Het |
| Hmcn1 |
T |
C |
1: 150,605,072 (GRCm38) |
D4451G |
probably benign |
Het |
| Krtcap3 |
T |
C |
5: 31,251,823 (GRCm38) |
|
probably benign |
Het |
| Ltn1 |
A |
T |
16: 87,420,807 (GRCm38) |
|
probably benign |
Het |
| Mapkapk2 |
T |
C |
1: 131,058,762 (GRCm38) |
M1V |
probably null |
Het |
| Mical3 |
A |
T |
6: 120,958,576 (GRCm38) |
I1663N |
probably benign |
Het |
| Mvp |
G |
T |
7: 127,001,961 (GRCm38) |
|
probably benign |
Het |
| Myo5c |
A |
G |
9: 75,263,042 (GRCm38) |
I485V |
probably damaging |
Het |
| N4bp2 |
T |
A |
5: 65,803,547 (GRCm38) |
C520* |
probably null |
Het |
| Nos2 |
A |
G |
11: 78,945,863 (GRCm38) |
|
probably benign |
Het |
| Ogdh |
G |
A |
11: 6,355,069 (GRCm38) |
V925M |
probably damaging |
Het |
| Pde2a |
T |
A |
7: 101,501,936 (GRCm38) |
|
probably benign |
Het |
| Plpp6 |
A |
G |
19: 28,964,879 (GRCm38) |
*293W |
probably null |
Het |
| Pole |
T |
A |
5: 110,303,884 (GRCm38) |
I864K |
probably damaging |
Het |
| Rexo4 |
A |
T |
2: 26,960,633 (GRCm38) |
I239N |
probably benign |
Het |
| Scn1a |
T |
A |
2: 66,322,343 (GRCm38) |
I748F |
probably damaging |
Het |
| Sfmbt2 |
A |
T |
2: 10,579,354 (GRCm38) |
R841* |
probably null |
Het |
| Sh3bp5l |
A |
G |
11: 58,338,001 (GRCm38) |
N100S |
probably damaging |
Het |
| Spic |
T |
A |
10: 88,675,761 (GRCm38) |
D211V |
probably damaging |
Het |
| Stab2 |
A |
G |
10: 86,940,613 (GRCm38) |
|
probably benign |
Het |
| Tshr |
A |
G |
12: 91,511,934 (GRCm38) |
Y83C |
probably damaging |
Het |
| Vsir |
A |
G |
10: 60,368,594 (GRCm38) |
E172G |
probably damaging |
Het |
| Wwp2 |
T |
C |
8: 107,549,781 (GRCm38) |
S508P |
probably damaging |
Het |
|
| Other mutations in B3gnt5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01352:B3gnt5
|
APN |
16 |
19,769,213 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02623:B3gnt5
|
APN |
16 |
19,769,610 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02978:B3gnt5
|
APN |
16 |
19,769,994 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03355:B3gnt5
|
APN |
16 |
19,769,153 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL03388:B3gnt5
|
APN |
16 |
19,770,051 (GRCm38) |
missense |
possibly damaging |
0.83 |
|
R0180:B3gnt5
|
UTSW |
16 |
19,769,100 (GRCm38) |
missense |
possibly damaging |
0.48 |
|
R0973:B3gnt5
|
UTSW |
16 |
19,770,010 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0973:B3gnt5
|
UTSW |
16 |
19,770,010 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0974:B3gnt5
|
UTSW |
16 |
19,770,010 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1034:B3gnt5
|
UTSW |
16 |
19,769,484 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1435:B3gnt5
|
UTSW |
16 |
19,769,174 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1480:B3gnt5
|
UTSW |
16 |
19,769,867 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1533:B3gnt5
|
UTSW |
16 |
19,769,614 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1920:B3gnt5
|
UTSW |
16 |
19,769,544 (GRCm38) |
missense |
probably benign |
0.34 |
|
R3962:B3gnt5
|
UTSW |
16 |
19,769,048 (GRCm38) |
missense |
probably benign |
0.37 |
|
R3963:B3gnt5
|
UTSW |
16 |
19,769,048 (GRCm38) |
missense |
probably benign |
0.37 |
|
R4620:B3gnt5
|
UTSW |
16 |
19,769,882 (GRCm38) |
missense |
probably benign |
0.37 |
|
R4948:B3gnt5
|
UTSW |
16 |
19,769,144 (GRCm38) |
missense |
probably benign |
|
|
R4987:B3gnt5
|
UTSW |
16 |
19,769,202 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5027:B3gnt5
|
UTSW |
16 |
19,769,694 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6415:B3gnt5
|
UTSW |
16 |
19,770,009 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7027:B3gnt5
|
UTSW |
16 |
19,769,990 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7224:B3gnt5
|
UTSW |
16 |
19,769,753 (GRCm38) |
missense |
probably benign |
0.06 |
|
R7261:B3gnt5
|
UTSW |
16 |
19,769,373 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7369:B3gnt5
|
UTSW |
16 |
19,769,660 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8818:B3gnt5
|
UTSW |
16 |
19,769,597 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
Z1176:B3gnt5
|
UTSW |
16 |
19,769,810 (GRCm38) |
nonsense |
probably null |
|
|
| Posted On |
2013-12-03 |
Incidental Mutation