Incidental Mutation 'IGL01505:Smdt1'
ID89050
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Smdt1
Ensembl Gene ENSMUSG00000022452
Gene Namesingle-pass membrane protein with aspartate rich tail 1
SynonymsEmre, 1500032L24Rik
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL01505
Quality Score
Status
Chromosome15
Chromosomal Location82338959-82349091 bp(+) (GRCm38)
Type of Mutationunclassified
DNA Base Change (assembly) T to C at 82347893 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000155449 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023085] [ENSMUST00000023086] [ENSMUST00000050349] [ENSMUST00000159054] [ENSMUST00000160994] [ENSMUST00000161178] [ENSMUST00000161892] [ENSMUST00000229537] [ENSMUST00000230360] [ENSMUST00000230494] [ENSMUST00000230676]
Predicted Effect probably benign
Transcript: ENSMUST00000023085
SMART Domains Protein: ENSMUSP00000023085
Gene: ENSMUSG00000022450

DomainStartEndE-ValueType
low complexity region 2 16 N/A INTRINSIC
Pfam:Complex1_LYR 33 95 8.1e-13 PFAM
Pfam:Complex1_LYR_1 33 97 4.2e-9 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000023086
SMART Domains Protein: ENSMUSP00000023086
Gene: ENSMUSG00000022452

DomainStartEndE-ValueType
Pfam:DDDD 33 107 1.7e-40 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000050349
SMART Domains Protein: ENSMUSP00000060598
Gene: ENSMUSG00000049687

DomainStartEndE-ValueType
PH 18 123 1.02e-10 SMART
coiled coil region 128 150 N/A INTRINSIC
Blast:PH 192 242 1e-9 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000159054
SMART Domains Protein: ENSMUSP00000125429
Gene: ENSMUSG00000022452

DomainStartEndE-ValueType
Pfam:DDDD 8 70 1.9e-26 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159942
Predicted Effect probably benign
Transcript: ENSMUST00000160994
Predicted Effect probably benign
Transcript: ENSMUST00000161178
SMART Domains Protein: ENSMUSP00000124703
Gene: ENSMUSG00000049687

DomainStartEndE-ValueType
PH 18 123 1.02e-10 SMART
coiled coil region 128 150 N/A INTRINSIC
Blast:PH 192 242 1e-9 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000161892
Predicted Effect noncoding transcript
Transcript: ENSMUST00000162705
Predicted Effect noncoding transcript
Transcript: ENSMUST00000162983
Predicted Effect noncoding transcript
Transcript: ENSMUST00000229427
Predicted Effect probably benign
Transcript: ENSMUST00000229537
Predicted Effect noncoding transcript
Transcript: ENSMUST00000230165
Predicted Effect probably benign
Transcript: ENSMUST00000230360
Predicted Effect probably benign
Transcript: ENSMUST00000230494
Predicted Effect noncoding transcript
Transcript: ENSMUST00000230589
Predicted Effect probably benign
Transcript: ENSMUST00000230676
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930546C10Rik T C 18: 68,947,347 probably null Het
A2m A G 6: 121,676,947 N1413S possibly damaging Het
Arhgap45 A T 10: 80,026,542 N488Y probably benign Het
Arid4a G A 12: 71,037,115 D94N probably damaging Het
Atp7a A G X: 106,109,830 K1114E probably damaging Het
Atp8a2 C T 14: 60,028,063 V275M probably benign Het
Ceacam12 T C 7: 18,067,432 V112A probably damaging Het
Cep295 T A 9: 15,318,049 D2256V probably benign Het
Chid1 A T 7: 141,513,894 probably null Het
Clcn5 A T X: 7,170,439 L268* probably null Het
Cldn17 A G 16: 88,506,703 I46T possibly damaging Het
Cnot1 A T 8: 95,728,718 I2025N probably damaging Het
Cntn5 C T 9: 9,706,087 V574M probably damaging Het
Col14a1 T A 15: 55,455,223 C1373S unknown Het
Col9a1 A G 1: 24,185,124 N129S unknown Het
Cp C T 3: 19,977,192 P598S possibly damaging Het
Cpb1 G A 3: 20,266,246 R150C probably damaging Het
Cyp2j7 T A 4: 96,227,680 probably null Het
Dnajb7 T C 15: 81,407,491 E215G possibly damaging Het
Dock1 G A 7: 135,158,510 R1634Q possibly damaging Het
Dopey2 A G 16: 93,757,116 T313A possibly damaging Het
Fgd2 T A 17: 29,366,997 V185E probably damaging Het
Flnb T C 14: 7,902,003 probably null Het
Fzd7 A G 1: 59,483,903 E315G probably benign Het
Gjc1 T A 11: 102,800,726 K150N probably benign Het
Gm436 C T 4: 144,674,618 V99M probably damaging Het
Gpihbp1 C T 15: 75,598,128 probably benign Het
Gpr160 T C 3: 30,895,853 S25P possibly damaging Het
Grsf1 G A 5: 88,672,749 R58* probably null Het
Ifit1 T A 19: 34,648,454 M330K probably benign Het
Igkv1-122 T C 6: 68,017,194 V22A probably benign Het
Ikbke A T 1: 131,255,311 D692E probably benign Het
Il15ra T C 2: 11,733,145 probably benign Het
Il18rap A G 1: 40,537,084 I252V probably damaging Het
Klra10 C T 6: 130,272,717 G202R probably damaging Het
Kpna7 A G 5: 144,992,851 V388A probably damaging Het
L2hgdh A G 12: 69,721,401 S108P probably damaging Het
Msto1 G A 3: 88,910,743 T388M probably benign Het
Naip1 T C 13: 100,425,933 E908G probably damaging Het
Neto1 C A 18: 86,473,689 D238E possibly damaging Het
Nlrp5 T A 7: 23,417,734 D294E probably benign Het
Nr3c2 T C 8: 76,909,187 S306P probably damaging Het
Olfr890 T A 9: 38,143,871 C240* probably null Het
Pard3 T A 8: 127,324,063 L202H probably damaging Het
Pdzd2 T C 15: 12,458,207 N190S probably damaging Het
Pi4ka T C 16: 17,309,358 D1077G probably benign Het
Pmfbp1 A C 8: 109,513,911 L208F probably damaging Het
Pms1 C T 1: 53,206,971 D470N probably benign Het
Prdm10 T C 9: 31,327,282 F108L probably benign Het
Rab11fip1 A T 8: 27,154,776 M327K possibly damaging Het
Slc37a4 T A 9: 44,399,964 L184Q probably damaging Het
Smg6 A G 11: 75,156,291 Y1270C probably damaging Het
Speer4f2 T A 5: 17,376,567 V169E possibly damaging Het
Stpg2 C T 3: 139,317,453 A410V probably benign Het
Tnrc6b T A 15: 80,879,963 D555E probably benign Het
Tsg101 A G 7: 46,909,060 Y46H probably damaging Het
Vmn2r111 G A 17: 22,548,572 S648L probably benign Het
Vmn2r73 T A 7: 85,858,059 R682* probably null Het
Xkr5 A T 8: 18,933,498 I676N probably damaging Het
Other mutations in Smdt1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00672:Smdt1 APN 15 82346183 missense possibly damaging 0.46
R1485:Smdt1 UTSW 15 82346232 missense probably benign 0.10
R1542:Smdt1 UTSW 15 82346175 missense possibly damaging 0.46
R5503:Smdt1 UTSW 15 82347900 missense possibly damaging 0.66
R6316:Smdt1 UTSW 15 82348009 missense probably damaging 1.00
Posted On2013-12-03