Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01511:Neto1'

89223

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Neto1

Ensembl Gene

ENSMUSG00000050321

Gene Name

neuropilin (NRP) and tolloid (TLL)-like 1

Synonyms

C130005O10Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01511

Quality Score

Status

Chromosome

Chromosomal Location

86413077-86524843 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 86414033 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Proline at position 9 (H9P)

Ref Sequence

ENSEMBL: ENSMUSP00000057340 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058829]

AlphaFold

Q8R4I7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000058829
AA Change: H9P

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000057340
Gene: ENSMUSG00000050321
AA Change: H9P

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
CUB	41	155	2.06e-35	SMART
CUB	172	287	3.1e-7	SMART
LDLa	291	328	3.11e-3	SMART
transmembrane domain	341	363	N/A	INTRINSIC
low complexity region	485	497	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a predicted transmembrane protein containing two extracellular CUB domains followed by a low-density lipoprotein class A (LDLa) domain. A similar gene in mice encodes a protein that plays a critical role in spatial learning and memory by regulating the function of synaptic N-methyl-D-aspartic acid receptor complexes in the hippocampus. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice homozygous for a null allele exhibit depressed long term potentiation, reduced NMDAR excitatory postsynaptic potentiation, and decreased spartial learning and working memory. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	A	T	11: 110,135,136 (GRCm39)	D216E	probably benign	Het
Abcc4	C	A	14: 118,836,753 (GRCm39)	L669F	probably benign	Het
Adam29	C	T	8: 56,324,456 (GRCm39)	G666D	probably damaging	Het
Adat2	T	G	10: 13,435,982 (GRCm39)	M109R	probably null	Het
Atf3	T	A	1: 190,903,693 (GRCm39)	T178S	probably benign	Het
Birc6	T	A	17: 74,933,998 (GRCm39)	Y2522*	probably null	Het
Ccr8	G	A	9: 119,923,691 (GRCm39)	G269R	probably damaging	Het
Ces1a	G	T	8: 93,771,726 (GRCm39)	P24T	probably damaging	Het
Chrna4	C	T	2: 180,670,461 (GRCm39)	V432I	probably benign	Het
Commd8	A	G	5: 72,322,722 (GRCm39)	V65A	probably benign	Het
Cyp2j13	A	G	4: 95,965,552 (GRCm39)	F52L	possibly damaging	Het
Desi1	T	A	15: 81,886,789 (GRCm39)	K45*	probably null	Het
Dmbt1	T	A	7: 130,718,457 (GRCm39)	M1552K	possibly damaging	Het
Dna2	G	A	10: 62,791,093 (GRCm39)	M197I	possibly damaging	Het
Dnah7a	A	C	1: 53,458,754 (GRCm39)	L3795V	probably damaging	Het
Dnai4	T	C	4: 102,905,558 (GRCm39)	D741G	possibly damaging	Het
Fam221b	T	C	4: 43,660,135 (GRCm39)		probably null	Het
Fbxw18	A	T	9: 109,517,889 (GRCm39)	S366T	possibly damaging	Het
Fzd8	A	G	18: 9,213,293 (GRCm39)	Y125C	unknown	Het
Gcsam	T	C	16: 45,436,315 (GRCm39)	Y11H	probably damaging	Het
Gucy2f	G	T	X: 140,944,730 (GRCm39)	D410E	probably damaging	Het
Hdac3	C	T	18: 38,085,648 (GRCm39)	A53T	probably benign	Het
Lamp2	A	G	X: 37,520,752 (GRCm39)	L244P	probably damaging	Het
Lrrk1	A	T	7: 65,915,198 (GRCm39)	F1630Y	possibly damaging	Het
M1ap	C	A	6: 83,005,393 (GRCm39)	D434E	probably benign	Het
Mcmbp	A	G	7: 128,308,888 (GRCm39)	Y378H	probably damaging	Het
Mvb12a	T	A	8: 71,997,946 (GRCm39)	V120E	probably damaging	Het
Nbeal2	A	C	9: 110,458,302 (GRCm39)	W2063G	probably damaging	Het
Nmu	C	T	5: 76,488,668 (GRCm39)	V126M	probably damaging	Het
Odf2	T	C	2: 29,804,321 (GRCm39)		probably benign	Het
Or2y15	A	G	11: 49,351,043 (GRCm39)	E179G	probably damaging	Het
Pdzrn3	T	C	6: 101,130,217 (GRCm39)	H533R	possibly damaging	Het
Pikfyve	G	T	1: 65,298,028 (GRCm39)	E1586*	probably null	Het
Plcb3	C	A	19: 6,933,211 (GRCm39)	R970L	probably damaging	Het
Plxna3	A	G	X: 73,378,914 (GRCm39)	E686G	probably damaging	Het
Polrmt	T	A	10: 79,575,985 (GRCm39)	Y586F	probably benign	Het
Ppt1	T	A	4: 122,748,218 (GRCm39)	F225I	probably damaging	Het
Prcc	T	G	3: 87,779,548 (GRCm39)	D162A	probably damaging	Het
Ripor1	T	C	8: 106,346,562 (GRCm39)		probably benign	Het
Rnaseh1	A	G	12: 28,709,008 (GRCm39)	H263R	probably damaging	Het
Rnf19b	T	A	4: 128,974,211 (GRCm39)	S490R	probably damaging	Het
Slc15a2	T	A	16: 36,605,088 (GRCm39)	T23S	probably damaging	Het
Slc34a1	T	C	13: 24,003,121 (GRCm39)		probably null	Het
Slc35f4	T	C	14: 49,536,334 (GRCm39)	M434V	probably benign	Het
Slc52a3	C	T	2: 151,846,564 (GRCm39)	T175I	probably benign	Het
Slc5a2	C	T	7: 127,869,794 (GRCm39)	T409M	probably benign	Het
Tbc1d24	A	G	17: 24,400,892 (GRCm39)	S108P	probably benign	Het
Thnsl2	T	G	6: 71,116,777 (GRCm39)	Q125P	probably benign	Het
Ttc13	T	C	8: 125,403,110 (GRCm39)	D672G	probably damaging	Het
Ttn	G	T	2: 76,584,089 (GRCm39)	H14013N	possibly damaging	Het
Unc5a	T	C	13: 55,152,629 (GRCm39)	F792L	probably damaging	Het
Vac14	T	C	8: 111,439,430 (GRCm39)	V669A	possibly damaging	Het
Vmn1r13	A	T	6: 57,187,314 (GRCm39)	M158L	probably benign	Het
Vmn1r220	A	T	13: 23,368,384 (GRCm39)	V104D	probably damaging	Het
Zfp738	A	T	13: 67,831,520 (GRCm39)		probably null	Het
Zscan5b	A	C	7: 6,234,421 (GRCm39)	H149P	probably benign	Het

Other mutations in Neto1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00764:Neto1	APN	18	86,516,937 (GRCm39)	missense	probably damaging	0.98
IGL01505:Neto1	APN	18	86,491,814 (GRCm39)	missense	possibly damaging	0.82
IGL02704:Neto1	APN	18	86,491,948 (GRCm39)	missense	probably damaging	1.00
IGL03072:Neto1	APN	18	86,516,714 (GRCm39)	missense	probably benign	0.23
R0119:Neto1	UTSW	18	86,479,445 (GRCm39)	missense	probably benign	0.17
R0136:Neto1	UTSW	18	86,479,445 (GRCm39)	missense	probably benign	0.17
R0299:Neto1	UTSW	18	86,479,445 (GRCm39)	missense	probably benign	0.17
R0603:Neto1	UTSW	18	86,491,785 (GRCm39)	missense	possibly damaging	0.95
R0633:Neto1	UTSW	18	86,422,854 (GRCm39)	nonsense	probably null
R0657:Neto1	UTSW	18	86,479,445 (GRCm39)	missense	probably benign	0.17
R1395:Neto1	UTSW	18	86,416,144 (GRCm39)	splice site	probably benign
R1648:Neto1	UTSW	18	86,518,179 (GRCm39)	missense	probably damaging	1.00
R1852:Neto1	UTSW	18	86,414,009 (GRCm39)	start codon destroyed	probably null	0.53
R2249:Neto1	UTSW	18	86,479,399 (GRCm39)	missense	probably benign	0.02
R4418:Neto1	UTSW	18	86,422,981 (GRCm39)	missense	probably benign
R4476:Neto1	UTSW	18	86,422,798 (GRCm39)	missense	probably damaging	0.98
R4676:Neto1	UTSW	18	86,416,427 (GRCm39)	missense	possibly damaging	0.47
R5095:Neto1	UTSW	18	86,416,406 (GRCm39)	missense	probably benign
R5282:Neto1	UTSW	18	86,422,998 (GRCm39)	missense	probably damaging	1.00
R5337:Neto1	UTSW	18	86,416,434 (GRCm39)	missense	probably benign	0.00
R5400:Neto1	UTSW	18	86,414,033 (GRCm39)	missense	possibly damaging	0.86
R5435:Neto1	UTSW	18	86,416,388 (GRCm39)	missense	probably benign	0.00
R5632:Neto1	UTSW	18	86,516,768 (GRCm39)	missense	probably benign	0.00
R5755:Neto1	UTSW	18	86,517,219 (GRCm39)	missense	probably damaging	0.99
R6272:Neto1	UTSW	18	86,512,940 (GRCm39)	missense	probably damaging	1.00
R6486:Neto1	UTSW	18	86,479,371 (GRCm39)	missense	probably benign
R6505:Neto1	UTSW	18	86,516,699 (GRCm39)	missense	possibly damaging	0.81
R6526:Neto1	UTSW	18	86,516,873 (GRCm39)	missense	possibly damaging	0.47
R6582:Neto1	UTSW	18	86,512,985 (GRCm39)	nonsense	probably null
R6887:Neto1	UTSW	18	86,516,760 (GRCm39)	missense	probably benign	0.16
R7452:Neto1	UTSW	18	86,517,056 (GRCm39)	missense	probably benign
R7469:Neto1	UTSW	18	86,516,813 (GRCm39)	missense	probably benign
R7795:Neto1	UTSW	18	86,479,198 (GRCm39)	missense	probably benign	0.00
R8912:Neto1	UTSW	18	86,479,173 (GRCm39)	missense	probably damaging	0.98
R9191:Neto1	UTSW	18	86,516,781 (GRCm39)	missense	probably damaging	1.00
R9196:Neto1	UTSW	18	86,413,965 (GRCm39)	start gained	probably benign
R9384:Neto1	UTSW	18	86,413,965 (GRCm39)	start gained	probably benign
R9597:Neto1	UTSW	18	86,422,821 (GRCm39)	missense	possibly damaging	0.95
R9674:Neto1	UTSW	18	86,491,827 (GRCm39)	missense	probably damaging	0.99

Posted On

2013-12-03