Incidental Mutation 'IGL01542:Gm20939'
| ID |
90200 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Gm20939
|
| Ensembl Gene |
ENSMUSG00000095193 |
| Gene Name |
predicted gene, 20939 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.072)
|
| Stock # |
IGL01542
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
17 |
| Chromosomal Location |
95172317-95185749 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
A to T
at 95181721 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000103642
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000108007]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000083724
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108007
|
| SMART Domains |
Protein: ENSMUSP00000103642
Gene: ENSMUSG00000095193
| Domain | Start | End | E-Value | Type |
|---|
|
KRAB
|
3 |
65 |
7.59e-15 |
SMART |
|
ZnF_C2H2
|
130 |
152 |
5.21e-4 |
SMART |
|
ZnF_C2H2
|
158 |
180 |
1.18e-2 |
SMART |
|
ZnF_C2H2
|
186 |
208 |
2.12e-4 |
SMART |
|
ZnF_C2H2
|
214 |
236 |
2.57e-3 |
SMART |
|
ZnF_C2H2
|
242 |
264 |
1.3e-4 |
SMART |
|
ZnF_C2H2
|
270 |
292 |
2.99e-4 |
SMART |
|
ZnF_C2H2
|
298 |
320 |
7.9e-4 |
SMART |
|
ZnF_C2H2
|
326 |
348 |
1.6e-4 |
SMART |
|
ZnF_C2H2
|
354 |
376 |
4.24e-4 |
SMART |
|
ZnF_C2H2
|
382 |
404 |
2.79e-4 |
SMART |
|
ZnF_C2H2
|
410 |
432 |
5.14e-3 |
SMART |
|
ZnF_C2H2
|
438 |
460 |
1.22e-4 |
SMART |
|
ZnF_C2H2
|
466 |
488 |
4.17e-3 |
SMART |
|
ZnF_C2H2
|
494 |
516 |
1.6e-4 |
SMART |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 27 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Arap3 |
G |
A |
18: 38,123,889 (GRCm39) |
R377C |
probably damaging |
Het |
| Arhgap20 |
A |
G |
9: 51,750,187 (GRCm39) |
M316V |
probably benign |
Het |
| Chd7 |
T |
G |
4: 8,859,285 (GRCm39) |
N2458K |
possibly damaging |
Het |
| Clock |
T |
C |
5: 76,379,322 (GRCm39) |
E538G |
possibly damaging |
Het |
| Clpb |
G |
A |
7: 101,436,712 (GRCm39) |
V596I |
probably damaging |
Het |
| Col9a3 |
T |
C |
2: 180,251,109 (GRCm39) |
|
probably benign |
Het |
| D130043K22Rik |
G |
A |
13: 25,060,020 (GRCm39) |
|
probably null |
Het |
| Drd4 |
T |
C |
7: 140,873,744 (GRCm39) |
|
probably benign |
Het |
| Fam228b |
A |
T |
12: 4,813,055 (GRCm39) |
I105N |
probably damaging |
Het |
| Gm4952 |
A |
G |
19: 12,595,771 (GRCm39) |
T54A |
possibly damaging |
Het |
| Hbs1l |
T |
C |
10: 21,183,655 (GRCm39) |
V132A |
probably benign |
Het |
| Kpna2 |
T |
A |
11: 106,882,027 (GRCm39) |
E266D |
probably benign |
Het |
| Lars1 |
T |
C |
18: 42,347,892 (GRCm39) |
E977G |
probably benign |
Het |
| Lrrn4 |
T |
C |
2: 132,721,392 (GRCm39) |
T142A |
probably benign |
Het |
| Myo19 |
T |
C |
11: 84,800,372 (GRCm39) |
L919P |
probably damaging |
Het |
| Nhlrc1 |
A |
T |
13: 47,167,607 (GRCm39) |
F217I |
probably damaging |
Het |
| Or10q12 |
T |
C |
19: 13,745,901 (GRCm39) |
F65S |
probably damaging |
Het |
| Plch1 |
T |
C |
3: 63,639,070 (GRCm39) |
I468V |
probably damaging |
Het |
| Rergl |
T |
A |
6: 139,470,496 (GRCm39) |
|
probably null |
Het |
| Sctr |
A |
G |
1: 119,972,499 (GRCm39) |
|
probably benign |
Het |
| Sdhb |
T |
C |
4: 140,700,278 (GRCm39) |
V126A |
probably benign |
Het |
| Smad3 |
C |
T |
9: 63,562,868 (GRCm39) |
R214Q |
probably damaging |
Het |
| Spmip3 |
A |
G |
1: 177,570,950 (GRCm39) |
T95A |
possibly damaging |
Het |
| Tdrd9 |
T |
C |
12: 112,013,423 (GRCm39) |
M1219T |
possibly damaging |
Het |
| Tmem167b |
A |
T |
3: 108,466,222 (GRCm39) |
N75K |
possibly damaging |
Het |
| Vmn2r83 |
T |
C |
10: 79,314,846 (GRCm39) |
S365P |
probably benign |
Het |
| Vps16 |
T |
C |
2: 130,280,314 (GRCm39) |
F153L |
probably damaging |
Het |
|
| Other mutations in Gm20939 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
R0015:Gm20939
|
UTSW |
17 |
95,184,196 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1563:Gm20939
|
UTSW |
17 |
95,184,522 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1714:Gm20939
|
UTSW |
17 |
95,183,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2029:Gm20939
|
UTSW |
17 |
95,183,252 (GRCm39) |
splice site |
probably benign |
|
|
R2922:Gm20939
|
UTSW |
17 |
95,184,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2923:Gm20939
|
UTSW |
17 |
95,184,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3158:Gm20939
|
UTSW |
17 |
95,184,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3810:Gm20939
|
UTSW |
17 |
95,184,138 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R4158:Gm20939
|
UTSW |
17 |
95,184,162 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R4304:Gm20939
|
UTSW |
17 |
95,184,709 (GRCm39) |
missense |
probably benign |
|
|
R4307:Gm20939
|
UTSW |
17 |
95,184,162 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R5080:Gm20939
|
UTSW |
17 |
95,184,419 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5271:Gm20939
|
UTSW |
17 |
95,184,583 (GRCm39) |
nonsense |
probably null |
|
|
R5661:Gm20939
|
UTSW |
17 |
95,183,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5771:Gm20939
|
UTSW |
17 |
95,181,767 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6800:Gm20939
|
UTSW |
17 |
95,184,657 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R8393:Gm20939
|
UTSW |
17 |
95,183,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8791:Gm20939
|
UTSW |
17 |
95,184,648 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9285:Gm20939
|
UTSW |
17 |
95,184,188 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9327:Gm20939
|
UTSW |
17 |
95,184,424 (GRCm39) |
missense |
probably benign |
0.12 |
|
R9348:Gm20939
|
UTSW |
17 |
95,182,977 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9599:Gm20939
|
UTSW |
17 |
95,184,666 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9686:Gm20939
|
UTSW |
17 |
95,184,888 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1088:Gm20939
|
UTSW |
17 |
95,184,861 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2013-12-03 |
Incidental Mutation