Incidental Mutation 'IGL01561:Xpo1'
| ID |
90847 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Xpo1
|
| Ensembl Gene |
ENSMUSG00000020290 |
| Gene Name |
exportin 1 |
| Synonyms |
Crm1 |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL01561
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
11 |
| Chromosomal Location |
23256041-23298249 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 23282706 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Histidine
at position 409
(Y409H)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000105178
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000020538]
[ENSMUST00000102869]
[ENSMUST00000102870]
[ENSMUST00000109551]
|
| AlphaFold |
Q6P5F9 |
| PDB Structure |
Crystal Structure of the Nuclear Export Complex CRM1-Snurportin1-RanGTP [X-RAY DIFFRACTION]
Crystal structure of the PKI NES-CRM1-RanGTP nuclear export complex [X-RAY DIFFRACTION]
Crystal structure of the HIV-1 Rev NES-CRM1-RanGTP nuclear export complex (crystal I) [X-RAY DIFFRACTION]
Crystal structure of the HIV-1 Rev NES-CRM1-RanGTP nuclear export complex (crystal II) [X-RAY DIFFRACTION]
Crystal structure of the CRM1-RanGTP complex [X-RAY DIFFRACTION]
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000020538
AA Change: Y409H
PolyPhen 2
Score 0.758 (Sensitivity: 0.85; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000020538
Gene: ENSMUSG00000020290
AA Change: Y409H
| Domain | Start | End | E-Value | Type |
|---|
|
IBN_N
|
46 |
112 |
2.3e-10 |
SMART |
|
Pfam:Xpo1
|
123 |
268 |
1.3e-44 |
PFAM |
|
Blast:IL1
|
407 |
518 |
9e-14 |
BLAST |
|
Blast:CRM1_C
|
590 |
699 |
1e-22 |
BLAST |
|
CRM1_C
|
709 |
1027 |
4.63e-211 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000102869
AA Change: Y409H
PolyPhen 2
Score 0.758 (Sensitivity: 0.85; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000099933
Gene: ENSMUSG00000020290
AA Change: Y409H
| Domain | Start | End | E-Value | Type |
|---|
|
IBN_N
|
46 |
112 |
2.3e-10 |
SMART |
|
Pfam:Xpo1
|
123 |
268 |
7.4e-44 |
PFAM |
|
Blast:IL1
|
407 |
518 |
9e-14 |
BLAST |
|
Blast:CRM1_C
|
590 |
699 |
1e-22 |
BLAST |
|
CRM1_C
|
709 |
1027 |
4.63e-211 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000102870
AA Change: Y409H
PolyPhen 2
Score 0.758 (Sensitivity: 0.85; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000099934
Gene: ENSMUSG00000020290
AA Change: Y409H
| Domain | Start | End | E-Value | Type |
|---|
|
IBN_N
|
46 |
112 |
2.3e-10 |
SMART |
|
Pfam:Xpo1
|
123 |
268 |
1.3e-44 |
PFAM |
|
Blast:IL1
|
407 |
518 |
9e-14 |
BLAST |
|
Blast:CRM1_C
|
590 |
699 |
1e-22 |
BLAST |
|
CRM1_C
|
709 |
1027 |
4.63e-211 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000109551
AA Change: Y409H
PolyPhen 2
Score 0.758 (Sensitivity: 0.85; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000105178
Gene: ENSMUSG00000020290
AA Change: Y409H
| Domain | Start | End | E-Value | Type |
|---|
|
IBN_N
|
46 |
112 |
2.3e-10 |
SMART |
|
Pfam:Xpo1
|
123 |
268 |
1.3e-44 |
PFAM |
|
Blast:IL1
|
407 |
518 |
9e-14 |
BLAST |
|
Blast:CRM1_C
|
590 |
699 |
1e-22 |
BLAST |
|
CRM1_C
|
709 |
1027 |
4.63e-211 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149371
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000150750
|
| SMART Domains |
Protein: ENSMUSP00000117846
Gene: ENSMUSG00000020290
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:CRM1_C
|
97 |
136 |
3e-8 |
BLAST |
|
Pfam:CRM1_C
|
171 |
233 |
4.3e-22 |
PFAM |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This cell-cycle-regulated gene encodes a protein that mediates leucine-rich nuclear export signal (NES)-dependent protein transport. The protein specifically inhibits the nuclear export of Rev and U snRNAs. It is involved in the control of several cellular processes by controlling the localization of cyclin B, MPAK, and MAPKAP kinase 2. This protein also regulates NFAT and AP-1. [provided by RefSeq, Jan 2015]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 27 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aebp1 |
G |
A |
11: 5,871,349 (GRCm38) |
D583N |
probably damaging |
Het |
| Aoah |
G |
T |
13: 21,005,094 (GRCm38) |
D496Y |
probably damaging |
Het |
| Aoah |
T |
C |
13: 20,905,735 (GRCm38) |
|
probably benign |
Het |
| Cdh10 |
G |
T |
15: 18,999,926 (GRCm38) |
A486S |
possibly damaging |
Het |
| Cers2 |
A |
T |
3: 95,322,161 (GRCm38) |
|
probably null |
Het |
| Clec4a4 |
T |
A |
6: 123,024,016 (GRCm38) |
C229* |
probably null |
Het |
| Col15a1 |
T |
C |
4: 47,312,118 (GRCm38) |
V1311A |
possibly damaging |
Het |
| Fpr-rs3 |
C |
T |
17: 20,624,597 (GRCm38) |
G94D |
probably damaging |
Het |
| Fsd1 |
T |
A |
17: 55,995,363 (GRCm38) |
M269K |
probably benign |
Het |
| Golga2 |
A |
G |
2: 32,296,677 (GRCm38) |
M73V |
probably benign |
Het |
| Gusb |
A |
T |
5: 129,998,086 (GRCm38) |
V388E |
probably damaging |
Het |
| Heg1 |
A |
G |
16: 33,766,668 (GRCm38) |
N1267S |
probably benign |
Het |
| Htra4 |
A |
C |
8: 25,033,571 (GRCm38) |
I326S |
probably damaging |
Het |
| Klhl33 |
T |
C |
14: 50,891,431 (GRCm38) |
I780M |
probably benign |
Het |
| Mertk |
T |
C |
2: 128,736,636 (GRCm38) |
S181P |
probably damaging |
Het |
| Mpdz |
T |
C |
4: 81,284,614 (GRCm38) |
H1882R |
probably damaging |
Het |
| Muc13 |
A |
G |
16: 33,806,041 (GRCm38) |
K317E |
possibly damaging |
Het |
| Nek3 |
A |
G |
8: 22,129,456 (GRCm38) |
F440S |
probably damaging |
Het |
| Nrxn2 |
G |
A |
19: 6,490,142 (GRCm38) |
R831H |
probably damaging |
Het |
| Olfr1490 |
T |
C |
19: 13,654,905 (GRCm38) |
F159L |
probably benign |
Het |
| Olfr357 |
T |
A |
2: 36,996,943 (GRCm38) |
F44L |
probably benign |
Het |
| Olfr866 |
T |
C |
9: 20,027,522 (GRCm38) |
M139V |
probably benign |
Het |
| Palmd |
A |
T |
3: 116,924,093 (GRCm38) |
S252T |
probably damaging |
Het |
| Piezo2 |
C |
A |
18: 63,124,614 (GRCm38) |
M344I |
probably benign |
Het |
| Pygo1 |
T |
A |
9: 72,945,288 (GRCm38) |
N252K |
probably damaging |
Het |
| Rhobtb1 |
A |
G |
10: 69,270,391 (GRCm38) |
Q262R |
probably benign |
Het |
| Zan |
T |
A |
5: 137,463,866 (GRCm38) |
E1017V |
unknown |
Het |
|
| Other mutations in Xpo1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00841:Xpo1
|
APN |
11 |
23,285,094 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01464:Xpo1
|
APN |
11 |
23,267,703 (GRCm38) |
missense |
probably damaging |
0.97 |
|
IGL01630:Xpo1
|
APN |
11 |
23,285,846 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL01700:Xpo1
|
APN |
11 |
23,276,422 (GRCm38) |
splice site |
probably benign |
|
|
IGL02000:Xpo1
|
APN |
11 |
23,296,003 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02299:Xpo1
|
APN |
11 |
23,293,915 (GRCm38) |
splice site |
probably benign |
|
|
IGL02313:Xpo1
|
APN |
11 |
23,277,065 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02828:Xpo1
|
APN |
11 |
23,282,593 (GRCm38) |
missense |
probably damaging |
0.97 |
|
IGL03210:Xpo1
|
APN |
11 |
23,278,834 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL03329:Xpo1
|
APN |
11 |
23,284,306 (GRCm38) |
missense |
probably benign |
|
|
PIT1430001:Xpo1
|
UTSW |
11 |
23,276,437 (GRCm38) |
missense |
possibly damaging |
0.66 |
|
R0507:Xpo1
|
UTSW |
11 |
23,294,682 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R0594:Xpo1
|
UTSW |
11 |
23,280,402 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0706:Xpo1
|
UTSW |
11 |
23,280,441 (GRCm38) |
missense |
probably benign |
0.09 |
|
R0742:Xpo1
|
UTSW |
11 |
23,294,682 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R1385:Xpo1
|
UTSW |
11 |
23,261,863 (GRCm38) |
missense |
probably damaging |
0.96 |
|
R1478:Xpo1
|
UTSW |
11 |
23,291,623 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1483:Xpo1
|
UTSW |
11 |
23,284,863 (GRCm38) |
missense |
probably benign |
0.04 |
|
R1694:Xpo1
|
UTSW |
11 |
23,281,399 (GRCm38) |
missense |
probably benign |
0.12 |
|
R1775:Xpo1
|
UTSW |
11 |
23,271,193 (GRCm38) |
missense |
probably benign |
|
|
R1827:Xpo1
|
UTSW |
11 |
23,285,155 (GRCm38) |
missense |
probably benign |
0.00 |
|
R2262:Xpo1
|
UTSW |
11 |
23,284,634 (GRCm38) |
splice site |
probably null |
|
|
R2263:Xpo1
|
UTSW |
11 |
23,284,634 (GRCm38) |
splice site |
probably null |
|
|
R4510:Xpo1
|
UTSW |
11 |
23,287,401 (GRCm38) |
missense |
possibly damaging |
0.60 |
|
R4511:Xpo1
|
UTSW |
11 |
23,287,401 (GRCm38) |
missense |
possibly damaging |
0.60 |
|
R4840:Xpo1
|
UTSW |
11 |
23,278,183 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4901:Xpo1
|
UTSW |
11 |
23,281,327 (GRCm38) |
missense |
possibly damaging |
0.62 |
|
R5176:Xpo1
|
UTSW |
11 |
23,295,977 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5508:Xpo1
|
UTSW |
11 |
23,294,645 (GRCm38) |
missense |
probably benign |
|
|
R5927:Xpo1
|
UTSW |
11 |
23,268,656 (GRCm38) |
unclassified |
probably benign |
|
|
R5927:Xpo1
|
UTSW |
11 |
23,268,653 (GRCm38) |
unclassified |
probably benign |
|
|
R6110:Xpo1
|
UTSW |
11 |
23,287,434 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6421:Xpo1
|
UTSW |
11 |
23,291,490 (GRCm38) |
missense |
possibly damaging |
0.60 |
|
R6591:Xpo1
|
UTSW |
11 |
23,286,875 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6691:Xpo1
|
UTSW |
11 |
23,286,875 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6698:Xpo1
|
UTSW |
11 |
23,294,040 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6958:Xpo1
|
UTSW |
11 |
23,285,855 (GRCm38) |
missense |
probably benign |
|
|
R7407:Xpo1
|
UTSW |
11 |
23,285,823 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7482:Xpo1
|
UTSW |
11 |
23,282,544 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7624:Xpo1
|
UTSW |
11 |
23,282,584 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8335:Xpo1
|
UTSW |
11 |
23,280,603 (GRCm38) |
splice site |
probably null |
|
|
R8823:Xpo1
|
UTSW |
11 |
23,267,752 (GRCm38) |
missense |
probably benign |
|
|
R9128:Xpo1
|
UTSW |
11 |
23,285,058 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9232:Xpo1
|
UTSW |
11 |
23,282,646 (GRCm38) |
missense |
probably benign |
|
|
R9277:Xpo1
|
UTSW |
11 |
23,291,550 (GRCm38) |
missense |
probably benign |
0.17 |
|
Z1176:Xpo1
|
UTSW |
11 |
23,296,080 (GRCm38) |
missense |
probably damaging |
0.99 |
|
| Posted On |
2013-12-09 |
Incidental Mutation