Incidental Mutation 'IGL01596:Cd209b'
ID91952
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Cd209b
Ensembl Gene ENSMUSG00000065987
Gene NameCD209b antigen
Synonyms1810030I22Rik, SIGNR1, mSIGNR1
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.047) question?
Stock #IGL01596
Quality Score
Status
Chromosome8
Chromosomal Location3917655-3926844 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 3918744 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Valine at position 304 (D304V)
Ref Sequence ENSEMBL: ENSMUSP00000081104 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000084086] [ENSMUST00000111014] [ENSMUST00000171635] [ENSMUST00000188386]
PDB Structure
Crystallographic structure of the native mouse SIGN-R1 CRD domain [X-RAY DIFFRACTION]
Structure of SIGN-R1 in complex with Sulfodextran [X-RAY DIFFRACTION]
Crystallographic structure of the mouse SIGN-R1 CRD domain in complex with sialic acid [X-RAY DIFFRACTION]
Predicted Effect probably damaging
Transcript: ENSMUST00000084086
AA Change: D304V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000081104
Gene: ENSMUSG00000065987
AA Change: D304V

DomainStartEndE-ValueType
transmembrane domain 53 75 N/A INTRINSIC
low complexity region 91 102 N/A INTRINSIC
CLECT 195 316 3.63e-31 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000111014
SMART Domains Protein: ENSMUSP00000106643
Gene: ENSMUSG00000065987

DomainStartEndE-ValueType
low complexity region 61 72 N/A INTRINSIC
CLECT 165 307 2.43e-23 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000171635
AA Change: D274V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000126070
Gene: ENSMUSG00000065987
AA Change: D274V

DomainStartEndE-ValueType
low complexity region 61 72 N/A INTRINSIC
CLECT 165 286 3.63e-31 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000188386
AA Change: D295V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000140695
Gene: ENSMUSG00000065987
AA Change: D295V

DomainStartEndE-ValueType
low complexity region 61 72 N/A INTRINSIC
CLECT 165 307 2.43e-23 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous mutants are more susceptible to S. pneumoniae infection and fail to clear the bacteria from the circulation. Marginal zone and peritoneal macrophages are impaired in recognizing the bacteria. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 27 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adh7 T C 3: 138,226,242 S206P probably damaging Het
Arhgef10 G T 8: 14,999,468 E869* probably null Het
C87436 T A 6: 86,446,219 D258E probably damaging Het
Casp8ap2 A G 4: 32,646,365 K1813E probably damaging Het
Chmp2b T C 16: 65,562,477 D11G probably benign Het
Comp A G 8: 70,378,635 N384S probably damaging Het
Dbnl A G 11: 5,798,279 Y336C probably damaging Het
Faf2 G T 13: 54,621,903 Q21H probably null Het
Fam117b A T 1: 59,952,971 K260* probably null Het
Gramd1b A G 9: 40,303,513 L379P probably damaging Het
Iars A G 13: 49,703,176 N302D probably benign Het
Kcnh6 C T 11: 106,026,746 T702I probably benign Het
Kdelr2 A G 5: 143,412,575 Y59C probably damaging Het
Mgam T C 6: 40,658,270 Y300H probably damaging Het
Olfr1286 A G 2: 111,420,892 S20P probably benign Het
Olfr1508 C T 14: 52,463,365 V215M probably damaging Het
Olfr411 T C 11: 74,347,419 E55G possibly damaging Het
Pcdh17 T C 14: 84,448,192 W700R probably damaging Het
Pigq T G 17: 25,927,686 H615P possibly damaging Het
Pkhd1l1 T A 15: 44,529,410 S1714T possibly damaging Het
Polr1b G T 2: 129,110,126 R358I probably benign Het
Tmprss11a C A 5: 86,422,519 V194F probably damaging Het
Trhr T C 15: 44,229,312 I315T probably damaging Het
Ttc38 G A 15: 85,836,073 V79M possibly damaging Het
Ubr4 T A 4: 139,462,534 probably benign Het
Vmn2r45 T C 7: 8,483,273 T339A probably damaging Het
Vps53 A G 11: 76,063,037 F501S probably damaging Het
Other mutations in Cd209b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00155:Cd209b APN 8 3919945 splice site probably benign
IGL03211:Cd209b APN 8 3918830 splice site probably benign
R1434:Cd209b UTSW 8 3923367 missense possibly damaging 0.49
R4127:Cd209b UTSW 8 3918714 missense probably damaging 1.00
R4387:Cd209b UTSW 8 3925960 missense probably damaging 0.99
R4388:Cd209b UTSW 8 3925960 missense probably damaging 0.99
R4389:Cd209b UTSW 8 3925960 missense probably damaging 0.99
R4708:Cd209b UTSW 8 3924215 missense probably damaging 0.99
R4710:Cd209b UTSW 8 3924215 missense probably damaging 0.99
R4911:Cd209b UTSW 8 3926640 critical splice acceptor site probably null
R5454:Cd209b UTSW 8 3925396 missense probably damaging 0.98
R5814:Cd209b UTSW 8 3923348 missense probably damaging 0.99
R5853:Cd209b UTSW 8 3926549 splice site probably null
R5867:Cd209b UTSW 8 3924246 missense possibly damaging 0.62
R5996:Cd209b UTSW 8 3918688 missense probably benign 0.39
R7020:Cd209b UTSW 8 3918783 missense probably damaging 0.99
R7187:Cd209b UTSW 8 3926638 missense probably benign
R7695:Cd209b UTSW 8 3926005 missense probably benign
R7712:Cd209b UTSW 8 3923299 missense possibly damaging 0.83
R7975:Cd209b UTSW 8 3925948 missense probably benign 0.41
R8309:Cd209b UTSW 8 3926559 nonsense probably null
R8317:Cd209b UTSW 8 3922018 missense probably damaging 0.99
Posted On2013-12-09