Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01615:Kdm3b'

92351

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Kdm3b

Ensembl Gene

ENSMUSG00000038773

Gene Name

KDM3B lysine (K)-specific demethylase 3B

Synonyms

JHDM2B, Jmjd1b, 5830462I21Rik

Accession Numbers

Essential gene?

Probably essential (E-score: 0.942) question?

Stock #

IGL01615

Quality Score

Status

Chromosome

Chromosomal Location

34777047-34838660 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 34829231 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 1523 (N1523K)

Ref Sequence

ENSEMBL: ENSMUSP00000037628 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043775] [ENSMUST00000225195]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000043775
AA Change: N1523K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000037628
Gene: ENSMUSG00000038773
AA Change: N1523K

Domain	Start	End	E-Value	Type
low complexity region	20	36	N/A	INTRINSIC
Blast:JmjC	149	944	N/A	BLAST
Blast:JmjC	946	1064	5e-40	BLAST
Blast:JmjC	1069	1471	N/A	BLAST
JmjC	1499	1722	2.43e-65	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223567

Predicted Effect

probably damaging
Transcript: ENSMUST00000225195
AA Change: N1323K

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adnp2	T	C	18: 80,128,477 (GRCm38)	T906A	probably damaging	Het
Akap13	A	G	7: 75,697,393 (GRCm38)	S1731G	probably damaging	Het
Apbb2	A	G	5: 66,307,701 (GRCm38)	V650A	probably benign	Het
Appl1	A	G	14: 26,959,470 (GRCm38)		probably benign	Het
Avpr1b	T	G	1: 131,600,147 (GRCm38)	V136G	probably damaging	Het
B020004J07Rik	T	A	4: 101,837,004 (GRCm38)	R227S	possibly damaging	Het
C6	T	C	15: 4,781,896 (GRCm38)	F409L	probably benign	Het
Cdk20	A	G	13: 64,436,310 (GRCm38)		probably benign	Het
Cenpf	T	C	1: 189,653,184 (GRCm38)	K2300E	possibly damaging	Het
Cfap57	C	T	4: 118,600,796 (GRCm38)	R399Q	probably damaging	Het
Cnnm1	A	T	19: 43,471,936 (GRCm38)	S706C	probably benign	Het
Cr1l	T	C	1: 195,129,881 (GRCm38)	I45V	possibly damaging	Het
D130043K22Rik	A	T	13: 24,899,796 (GRCm38)	R1081S	probably damaging	Het
Ddx60	A	T	8: 61,963,740 (GRCm38)	H573L	probably null	Het
Eif5b	T	C	1: 38,045,706 (GRCm38)	L878S	probably damaging	Het
Ets1	T	C	9: 32,732,939 (GRCm38)		probably benign	Het
Evi5	A	G	5: 107,764,707 (GRCm38)	L696P	probably damaging	Het
Fbxo18	C	A	2: 11,757,523 (GRCm38)	E12*	probably null	Het
Gabpb1	C	A	2: 126,653,600 (GRCm38)	M77I	possibly damaging	Het
Glul	T	A	1: 153,906,476 (GRCm38)	N152K	probably benign	Het
Gm45234	T	C	6: 124,746,431 (GRCm38)	Y613C	probably damaging	Het
Gm5611	A	G	9: 17,030,351 (GRCm38)		noncoding transcript	Het
Gm6583	A	G	5: 112,355,830 (GRCm38)	S3P	possibly damaging	Het
Gpr156	T	A	16: 37,988,591 (GRCm38)	I225K	probably damaging	Het
Herc4	T	C	10: 63,290,682 (GRCm38)		probably benign	Het
Iqsec3	C	T	6: 121,410,621 (GRCm38)	V720M	probably damaging	Het
Itgam	A	T	7: 128,116,767 (GRCm38)	H1104L	possibly damaging	Het
Itgb3	T	A	11: 104,643,965 (GRCm38)	D549E	probably damaging	Het
Kctd7	A	T	5: 130,148,135 (GRCm38)	M76L	probably damaging	Het
Map3k12	T	A	15: 102,503,751 (GRCm38)	E318D	probably damaging	Het
Mc1r	T	C	8: 123,408,050 (GRCm38)	Y181H	probably damaging	Het
Mex3c	G	A	18: 73,573,632 (GRCm38)	A197T	unknown	Het
Mvk	A	G	5: 114,446,292 (GRCm38)	D71G	probably benign	Het
Ndufb3	T	A	1: 58,595,753 (GRCm38)	L88*	probably null	Het
Olfr476	A	G	7: 107,967,937 (GRCm38)	D180G	probably damaging	Het
Olfr684	A	G	7: 105,157,460 (GRCm38)	V74A	probably benign	Het
Pifo	G	T	3: 105,997,207 (GRCm38)		probably null	Het
Psmg2	G	A	18: 67,653,223 (GRCm38)	V218I	probably benign	Het
Slc5a3	C	T	16: 92,079,112 (GRCm38)	Q686*	probably null	Het
Vmn2r75	T	C	7: 86,148,473 (GRCm38)	I711V	probably benign	Het
Vps13c	T	A	9: 67,955,781 (GRCm38)	H3026Q	probably benign	Het
Zfp354c	A	G	11: 50,817,905 (GRCm38)	S22P	possibly damaging	Het

Other mutations in Kdm3b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00162:Kdm3b	APN	18	34,809,409 (GRCm38)	missense	probably benign	0.03
IGL01357:Kdm3b	APN	18	34,793,014 (GRCm38)	missense	probably damaging	1.00
IGL01980:Kdm3b	APN	18	34,834,236 (GRCm38)	missense	probably damaging	1.00
IGL02277:Kdm3b	APN	18	34,823,664 (GRCm38)	missense	probably damaging	1.00
IGL02346:Kdm3b	APN	18	34,834,238 (GRCm38)	missense	probably damaging	1.00
IGL02417:Kdm3b	APN	18	34,808,577 (GRCm38)	missense	probably benign	0.03
IGL02531:Kdm3b	APN	18	34,795,729 (GRCm38)	missense	probably benign
IGL02589:Kdm3b	APN	18	34,812,418 (GRCm38)	missense	possibly damaging	0.89
IGL02793:Kdm3b	APN	18	34,829,019 (GRCm38)	missense	probably damaging	0.99
IGL03121:Kdm3b	APN	18	34,795,709 (GRCm38)	missense	probably damaging	0.98
IGL03123:Kdm3b	APN	18	34,809,491 (GRCm38)	critical splice donor site	probably null
IGL03128:Kdm3b	APN	18	34,827,427 (GRCm38)	missense	probably damaging	1.00
Affable	UTSW	18	34,793,005 (GRCm38)	missense	probably damaging	1.00
Dotage	UTSW	18	34,827,382 (GRCm38)	missense	probably damaging	1.00
Endearing	UTSW	18	34,827,328 (GRCm38)	splice site	probably null
Oldtimer	UTSW	18	34,823,699 (GRCm38)	nonsense	probably null
PIT4382001:Kdm3b	UTSW	18	34,809,087 (GRCm38)	missense	probably damaging	1.00
PIT4445001:Kdm3b	UTSW	18	34,793,115 (GRCm38)	nonsense	probably null
R0068:Kdm3b	UTSW	18	34,824,774 (GRCm38)	missense	probably benign	0.18
R0068:Kdm3b	UTSW	18	34,824,774 (GRCm38)	missense	probably benign	0.18
R0233:Kdm3b	UTSW	18	34,809,420 (GRCm38)	missense	probably damaging	0.97
R0265:Kdm3b	UTSW	18	34,795,663 (GRCm38)	splice site	probably benign
R0306:Kdm3b	UTSW	18	34,804,017 (GRCm38)	missense	probably benign	0.35
R0941:Kdm3b	UTSW	18	34,803,552 (GRCm38)	missense	probably damaging	0.99
R0970:Kdm3b	UTSW	18	34,809,039 (GRCm38)	missense	probably damaging	1.00
R1061:Kdm3b	UTSW	18	34,796,862 (GRCm38)	missense	probably damaging	1.00
R1104:Kdm3b	UTSW	18	34,819,811 (GRCm38)	missense	probably damaging	1.00
R1221:Kdm3b	UTSW	18	34,808,245 (GRCm38)	missense	possibly damaging	0.57
R1486:Kdm3b	UTSW	18	34,834,304 (GRCm38)	missense	probably damaging	1.00
R1523:Kdm3b	UTSW	18	34,793,173 (GRCm38)	critical splice donor site	probably null
R1558:Kdm3b	UTSW	18	34,809,096 (GRCm38)	missense	probably damaging	1.00
R1585:Kdm3b	UTSW	18	34,809,292 (GRCm38)	missense	probably damaging	1.00
R1601:Kdm3b	UTSW	18	34,808,731 (GRCm38)	missense	probably damaging	1.00
R1650:Kdm3b	UTSW	18	34,809,115 (GRCm38)	missense	possibly damaging	0.93
R1772:Kdm3b	UTSW	18	34,803,504 (GRCm38)	missense	probably benign	0.01
R1853:Kdm3b	UTSW	18	34,833,393 (GRCm38)	missense	probably damaging	1.00
R1934:Kdm3b	UTSW	18	34,813,544 (GRCm38)	missense	probably benign	0.04
R1959:Kdm3b	UTSW	18	34,812,395 (GRCm38)	missense	possibly damaging	0.55
R2079:Kdm3b	UTSW	18	34,803,517 (GRCm38)	missense	probably damaging	1.00
R2102:Kdm3b	UTSW	18	34,830,147 (GRCm38)	missense	probably damaging	1.00
R2121:Kdm3b	UTSW	18	34,796,780 (GRCm38)	splice site	probably benign
R2281:Kdm3b	UTSW	18	34,808,419 (GRCm38)	missense	probably damaging	1.00
R3719:Kdm3b	UTSW	18	34,808,671 (GRCm38)	missense	probably damaging	1.00
R3755:Kdm3b	UTSW	18	34,808,296 (GRCm38)	missense	probably benign
R3857:Kdm3b	UTSW	18	34,833,387 (GRCm38)	missense	probably benign
R4165:Kdm3b	UTSW	18	34,795,744 (GRCm38)	missense	probably benign	0.01
R4166:Kdm3b	UTSW	18	34,795,744 (GRCm38)	missense	probably benign	0.01
R4372:Kdm3b	UTSW	18	34,827,444 (GRCm38)	missense	probably benign	0.00
R4672:Kdm3b	UTSW	18	34,808,577 (GRCm38)	missense	probably benign
R4933:Kdm3b	UTSW	18	34,810,393 (GRCm38)	missense	probably damaging	1.00
R4969:Kdm3b	UTSW	18	34,822,375 (GRCm38)	missense	probably damaging	1.00
R5009:Kdm3b	UTSW	18	34,824,710 (GRCm38)	missense	probably benign	0.42
R5059:Kdm3b	UTSW	18	34,777,197 (GRCm38)	missense	possibly damaging	0.83
R5092:Kdm3b	UTSW	18	34,813,462 (GRCm38)	missense	probably benign	0.16
R5270:Kdm3b	UTSW	18	34,827,414 (GRCm38)	missense	probably damaging	1.00
R5816:Kdm3b	UTSW	18	34,828,469 (GRCm38)	missense	probably damaging	0.99
R5970:Kdm3b	UTSW	18	34,829,289 (GRCm38)	missense	probably damaging	1.00
R6244:Kdm3b	UTSW	18	34,793,005 (GRCm38)	missense	probably damaging	1.00
R6705:Kdm3b	UTSW	18	34,819,873 (GRCm38)	missense	probably damaging	1.00
R6723:Kdm3b	UTSW	18	34,793,005 (GRCm38)	missense	probably damaging	0.99
R6909:Kdm3b	UTSW	18	34,827,328 (GRCm38)	splice site	probably null
R6958:Kdm3b	UTSW	18	34,808,283 (GRCm38)	missense	probably benign	0.00
R7026:Kdm3b	UTSW	18	34,822,464 (GRCm38)	missense	possibly damaging	0.90
R7289:Kdm3b	UTSW	18	34,794,504 (GRCm38)	missense	probably benign	0.00
R7488:Kdm3b	UTSW	18	34,824,881 (GRCm38)	missense	probably damaging	0.97
R7587:Kdm3b	UTSW	18	34,797,027 (GRCm38)	splice site	probably null
R7695:Kdm3b	UTSW	18	34,794,559 (GRCm38)	missense	possibly damaging	0.86
R7846:Kdm3b	UTSW	18	34,809,240 (GRCm38)	missense	possibly damaging	0.94
R7984:Kdm3b	UTSW	18	34,823,699 (GRCm38)	nonsense	probably null
R7997:Kdm3b	UTSW	18	34,808,283 (GRCm38)	missense	probably benign	0.00
R8035:Kdm3b	UTSW	18	34,808,728 (GRCm38)	missense	probably damaging	1.00
R8064:Kdm3b	UTSW	18	34,813,407 (GRCm38)	critical splice acceptor site	probably null
R8141:Kdm3b	UTSW	18	34,828,546 (GRCm38)	nonsense	probably null
R8302:Kdm3b	UTSW	18	34,834,335 (GRCm38)	missense	probably damaging	1.00
R8328:Kdm3b	UTSW	18	34,793,070 (GRCm38)	missense	probably damaging	1.00
R8443:Kdm3b	UTSW	18	34,793,076 (GRCm38)	missense	probably benign	0.04
R8513:Kdm3b	UTSW	18	34,793,076 (GRCm38)	missense	probably benign	0.04
R8515:Kdm3b	UTSW	18	34,793,076 (GRCm38)	missense	probably benign	0.04
R8523:Kdm3b	UTSW	18	34,793,076 (GRCm38)	missense	probably benign	0.04
R8717:Kdm3b	UTSW	18	34,819,787 (GRCm38)	missense	probably damaging	0.98
R8725:Kdm3b	UTSW	18	34,827,382 (GRCm38)	missense	probably damaging	1.00
R8727:Kdm3b	UTSW	18	34,827,382 (GRCm38)	missense	probably damaging	1.00
R8762:Kdm3b	UTSW	18	34,804,104 (GRCm38)	missense	probably benign
R8835:Kdm3b	UTSW	18	34,808,749 (GRCm38)	missense	probably damaging	1.00
R8918:Kdm3b	UTSW	18	34,837,597 (GRCm38)	missense	probably damaging	1.00
R9015:Kdm3b	UTSW	18	34,830,159 (GRCm38)	missense	probably damaging	1.00
R9144:Kdm3b	UTSW	18	34,794,505 (GRCm38)	missense	probably benign
R9246:Kdm3b	UTSW	18	34,808,427 (GRCm38)	nonsense	probably null
R9376:Kdm3b	UTSW	18	34,837,665 (GRCm38)	missense	probably damaging	0.99
X0028:Kdm3b	UTSW	18	34,799,266 (GRCm38)	splice site	probably null
X0067:Kdm3b	UTSW	18	34,823,517 (GRCm38)	missense	probably benign	0.00
Z1176:Kdm3b	UTSW	18	34,809,069 (GRCm38)	nonsense	probably null

Posted On

2013-12-09