Incidental Mutation 'IGL01618:Nectin1'
ID 92453
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Nectin1
Ensembl Gene ENSMUSG00000032012
Gene Name nectin cell adhesion molecule 1
Synonyms HveC, Pvrl1, HIgR, nectin-1, PRR, Cd111, PRR1
Accession Numbers
Essential gene? Probably essential (E-score: 0.766) question?
Stock # IGL01618
Quality Score
Status
Chromosome 9
Chromosomal Location 43743984-43807461 bp(+) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 43791258 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 101 (R101*)
Ref Sequence ENSEMBL: ENSMUSP00000034510 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034510] [ENSMUST00000216893]
AlphaFold Q9JKF6
PDB Structure Solution structure of the third Immunoglobulin-like domain of nectin-1 [SOLUTION NMR]
Predicted Effect probably null
Transcript: ENSMUST00000034510
AA Change: R101*
SMART Domains Protein: ENSMUSP00000034510
Gene: ENSMUSG00000032012
AA Change: R101*

DomainStartEndE-ValueType
low complexity region 1 20 N/A INTRINSIC
IG 36 143 8.51e-7 SMART
Pfam:C2-set_2 148 237 8.5e-21 PFAM
IG 254 334 1.28e-1 SMART
transmembrane domain 355 377 N/A INTRINSIC
low complexity region 436 448 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000216893
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an adhesion protein that plays a role in the organization of adherens junctions and tight junctions in epithelial and endothelial cells. The protein is a calcium(2+)-independent cell-cell adhesion molecule that belongs to the immunoglobulin superfamily and has 3 extracellular immunoglobulin-like loops, a single transmembrane domain (in some isoforms), and a cytoplasmic region. This protein acts as a receptor for glycoprotein D (gD) of herpes simplex viruses 1 and 2 (HSV-1, HSV-2), and pseudorabies virus (PRV) and mediates viral entry into epithelial and neuronal cells. Mutations in this gene cause cleft lip and palate/ectodermal dysplasia 1 syndrome (CLPED1) as well as non-syndromic cleft lip with or without cleft palate (CL/P). Alternative splicing results in multiple transcript variants encoding proteins with distinct C-termini. [provided by RefSeq, Oct 2009]
PHENOTYPE: Homozygous null mice exhibit eye abnormalities including microphthalmia, absent vitreous body, abnormal ciliary body, retinal layers, and lenses, and open eyelids at birth. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acsl5 C T 19: 55,272,833 (GRCm38) A74V probably benign Het
Adh4 C T 3: 138,429,027 (GRCm38) probably benign Het
Aldh1a3 G A 7: 66,409,230 (GRCm38) T239I probably damaging Het
Anxa9 A G 3: 95,300,536 (GRCm38) probably null Het
Atp5k C A 5: 108,434,033 (GRCm38) K28N probably damaging Het
C9 T G 15: 6,459,668 (GRCm38) Y169D probably benign Het
Cbwd1 T C 19: 24,940,776 (GRCm38) E210G possibly damaging Het
Chat T A 14: 32,446,892 (GRCm38) probably null Het
Csmd3 C T 15: 48,011,083 (GRCm38) E706K probably benign Het
Ctbs A G 3: 146,455,112 (GRCm38) K145E probably benign Het
Dennd5a A G 7: 109,934,095 (GRCm38) M156T probably damaging Het
Dhx29 A G 13: 112,965,222 (GRCm38) Y1275C probably damaging Het
Dpp10 A T 1: 123,367,867 (GRCm38) F517Y probably benign Het
Dst G A 1: 34,188,909 (GRCm38) W1536* probably null Het
Galc T C 12: 98,252,081 (GRCm38) T171A possibly damaging Het
Gsap T C 5: 21,226,248 (GRCm38) I190T probably damaging Het
Hars2 A T 18: 36,789,577 (GRCm38) R388* probably null Het
Igsf21 C T 4: 140,107,364 (GRCm38) G66S possibly damaging Het
Itgbl1 T A 14: 123,827,799 (GRCm38) S122T possibly damaging Het
Jhy G T 9: 40,960,964 (GRCm38) T83K possibly damaging Het
Kcne4 A T 1: 78,817,808 (GRCm38) M58L possibly damaging Het
Lamc3 T A 2: 31,912,107 (GRCm38) I509N probably damaging Het
Lpar6 T C 14: 73,239,066 (GRCm38) S156P probably damaging Het
Man2c1 T C 9: 57,141,556 (GRCm38) probably benign Het
March11 T C 15: 26,409,199 (GRCm38) I328T possibly damaging Het
Mc3r T A 2: 172,249,370 (GRCm38) C171S probably benign Het
Muc4 A T 16: 32,756,627 (GRCm38) Q2167L unknown Het
Myom1 T C 17: 71,099,993 (GRCm38) V1135A possibly damaging Het
Nxpe4 T C 9: 48,394,140 (GRCm38) S277P possibly damaging Het
Olfr1152 A C 2: 87,868,144 (GRCm38) D51A probably damaging Het
Olfr1459 T A 19: 13,146,250 (GRCm38) K136N probably benign Het
Olfr395 T C 11: 73,907,477 (GRCm38) N5S probably damaging Het
Olfr437 T A 6: 43,167,703 (GRCm38) V215E probably damaging Het
Olfr584 G A 7: 103,086,375 (GRCm38) V281I probably benign Het
Pappa2 G T 1: 158,857,378 (GRCm38) N730K probably damaging Het
Prepl A G 17: 85,066,281 (GRCm38) V586A probably damaging Het
Prrc2a T C 17: 35,149,553 (GRCm38) Y2098C probably damaging Het
Rdh16 G A 10: 127,801,307 (GRCm38) C37Y probably damaging Het
Rnd1 A T 15: 98,673,865 (GRCm38) M100K probably benign Het
Sema3c A G 5: 17,672,506 (GRCm38) N204D probably damaging Het
Susd4 A G 1: 182,858,461 (GRCm38) probably null Het
Taar7f G T 10: 24,050,341 (GRCm38) A278S possibly damaging Het
Tle4 T A 19: 14,544,814 (GRCm38) M122L probably benign Het
Trim9 C T 12: 70,248,351 (GRCm38) V662I probably benign Het
Vmn2r10 C A 5: 109,002,479 (GRCm38) C233F probably damaging Het
Vmn2r98 A C 17: 19,065,259 (GRCm38) T114P possibly damaging Het
Zfyve21 C T 12: 111,827,813 (GRCm38) probably benign Het
Other mutations in Nectin1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01939:Nectin1 APN 9 43,792,574 (GRCm38) unclassified probably benign
IGL01978:Nectin1 APN 9 43,792,147 (GRCm38) missense probably damaging 0.99
IGL02795:Nectin1 APN 9 43,803,552 (GRCm38) missense probably benign
K3955:Nectin1 UTSW 9 43,792,078 (GRCm38) missense probably damaging 1.00
R0563:Nectin1 UTSW 9 43,791,045 (GRCm38) missense probably benign
R1439:Nectin1 UTSW 9 43,792,099 (GRCm38) missense possibly damaging 0.78
R1822:Nectin1 UTSW 9 43,791,077 (GRCm38) nonsense probably null
R4356:Nectin1 UTSW 9 43,792,505 (GRCm38) missense probably benign 0.22
R5153:Nectin1 UTSW 9 43,803,498 (GRCm38) missense probably damaging 0.99
R5516:Nectin1 UTSW 9 43,803,793 (GRCm38) missense probably benign 0.03
R5864:Nectin1 UTSW 9 43,791,310 (GRCm38) missense probably damaging 1.00
R6903:Nectin1 UTSW 9 43,791,882 (GRCm38) missense possibly damaging 0.95
R7791:Nectin1 UTSW 9 43,792,039 (GRCm38) missense probably benign 0.08
R7878:Nectin1 UTSW 9 43,803,901 (GRCm38) missense probably benign 0.10
R8046:Nectin1 UTSW 9 43,792,501 (GRCm38) missense probably benign 0.00
R8945:Nectin1 UTSW 9 43,791,940 (GRCm38) missense probably benign
R9459:Nectin1 UTSW 9 43,803,793 (GRCm38) missense probably benign
R9526:Nectin1 UTSW 9 43,791,072 (GRCm38) missense probably benign
R9744:Nectin1 UTSW 9 43,803,943 (GRCm38) missense probably damaging 0.97
Posted On 2013-12-09