Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01636:Ik'

93014

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ensembl Gene

ENSMUSG00000024474

Gene Name

IK cytokine

Synonyms

MuRED

Accession Numbers

Essential gene?

Probably essential (E-score: 0.968) question?

Stock #

IGL01636

Quality Score

Status

Chromosome

Chromosomal Location

36877709-36890692 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 36884254 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 245 (D245E)

Ref Sequence

ENSEMBL: ENSMUSP00000007042 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000007042]

AlphaFold

Q9Z1M8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000007042
AA Change: D245E

PolyPhen 2 Score 0.633 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000007042
Gene: ENSMUSG00000024474
AA Change: D245E

Domain	Start	End	E-Value	Type
low complexity region	42	56	N/A	INTRINSIC
Pfam:RED_N	76	302	1.6e-105	PFAM
low complexity region	334	380	N/A	INTRINSIC
Pfam:RED_C	445	554	1.1e-52	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224284

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was identified by its RED repeat, a stretch of repeated arginine, glutamic acid and aspartic acid residues. The protein localizes to discrete dots within the nucleus, excluding the nucleolus. Its function is unknown. This gene maps to chromosome 5; however, a pseudogene may exist on chromosome 2. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam4	T	C	12: 81,466,723 (GRCm39)	T633A	possibly damaging	Het
Adgrd1	G	T	5: 129,219,516 (GRCm39)		probably benign	Het
Bmp7	T	C	2: 172,717,001 (GRCm39)		probably benign	Het
Ccdc54	A	G	16: 50,410,277 (GRCm39)	*330Q	probably null	Het
Chd5	A	T	4: 152,469,110 (GRCm39)	K1812*	probably null	Het
Cnga3	T	A	1: 37,299,874 (GRCm39)	I236N	possibly damaging	Het
Ddost	T	G	4: 138,036,707 (GRCm39)	D135E	possibly damaging	Het
Dicer1	T	C	12: 104,688,500 (GRCm39)	D359G	probably damaging	Het
Dnah17	A	C	11: 117,931,882 (GRCm39)	S3697A	probably benign	Het
Dnttip2	G	A	3: 122,076,123 (GRCm39)	G685D	possibly damaging	Het
Dst	T	G	1: 34,254,650 (GRCm39)	S4552R	probably damaging	Het
Ebf2	G	A	14: 67,476,927 (GRCm39)	E157K	probably damaging	Het
Ehbp1	C	T	11: 22,039,584 (GRCm39)	V839M	probably benign	Het
Ehmt1	G	T	2: 24,729,620 (GRCm39)	T639K	probably damaging	Het
Esyt2	T	C	12: 116,329,550 (GRCm39)		probably null	Het
Etv6	T	C	6: 134,225,350 (GRCm39)	S194P	probably benign	Het
Fam184b	T	C	5: 45,741,637 (GRCm39)	H198R	probably benign	Het
Fam210b	T	C	2: 172,193,460 (GRCm39)	F91S	probably damaging	Het
Fam81a	G	A	9: 70,006,434 (GRCm39)	Q193*	probably null	Het
Fto	A	G	8: 92,135,969 (GRCm39)	D79G	probably damaging	Het
Haspin	C	T	11: 73,028,231 (GRCm39)	R286H	possibly damaging	Het
Hmcn1	C	T	1: 150,455,984 (GRCm39)	C5312Y	probably damaging	Het
Itga1	A	G	13: 115,143,484 (GRCm39)	V349A	possibly damaging	Het
Kdm8	T	C	7: 125,060,377 (GRCm39)	V400A	probably damaging	Het
Larp1b	G	T	3: 40,924,913 (GRCm39)	R177L	probably benign	Het
Lifr	T	G	15: 7,208,499 (GRCm39)		probably benign	Het
Lrrn2	T	C	1: 132,864,959 (GRCm39)	L8P	possibly damaging	Het
Marcksl1	T	A	4: 129,408,587 (GRCm39)	D55E	probably benign	Het
Med12	C	A	X: 100,318,795 (GRCm39)	S74R	probably damaging	Het
Mtarc2	T	C	1: 184,564,838 (GRCm39)	K231E	probably benign	Het
Or52s1	C	A	7: 102,861,384 (GRCm39)	R95S	probably benign	Het
Or6c35	A	T	10: 129,168,752 (GRCm39)	M1L	probably damaging	Het
Or7e170	A	G	9: 19,795,484 (GRCm39)	V39A	probably benign	Het
Or8k39	G	A	2: 86,563,945 (GRCm39)	Q4*	probably null	Het
Orc3	A	C	4: 34,595,096 (GRCm39)	L233R	probably damaging	Het
Pik3cd	A	G	4: 149,738,772 (GRCm39)	M715T	possibly damaging	Het
Prss43	T	A	9: 110,656,505 (GRCm39)	L64Q	possibly damaging	Het
Pyroxd2	C	A	19: 42,726,771 (GRCm39)	G209V	probably benign	Het
Rab3b	A	G	4: 108,797,916 (GRCm39)	D198G	possibly damaging	Het
Rrbp1	A	T	2: 143,789,815 (GRCm39)		probably benign	Het
Smg6	T	C	11: 74,825,929 (GRCm39)		probably null	Het
Ssrp1	T	C	2: 84,871,443 (GRCm39)		probably benign	Het
Strip2	C	A	6: 29,931,192 (GRCm39)	T381K	probably benign	Het
Svep1	A	T	4: 58,116,622 (GRCm39)	L876Q	possibly damaging	Het
Tle4	T	C	19: 14,429,897 (GRCm39)	I625V	probably damaging	Het
Tnfrsf23	T	C	7: 143,233,736 (GRCm39)	T81A	probably damaging	Het
Ttc41	A	G	10: 86,612,542 (GRCm39)	K1272E	probably benign	Het
Usp3	A	G	9: 66,469,834 (GRCm39)		probably null	Het
Vmn1r121	C	T	7: 20,832,282 (GRCm39)	V53M	probably benign	Het
Vmn1r65	A	T	7: 6,011,720 (GRCm39)	S171R	probably benign	Het
Vmn2r4	A	T	3: 64,313,657 (GRCm39)	D441E	probably benign	Het
Vps13d	A	T	4: 144,801,618 (GRCm39)	H2353Q	probably damaging	Het
Vwa8	T	C	14: 79,435,794 (GRCm39)	S1835P	possibly damaging	Het

Other mutations in Ik

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00536:Ik	APN	18	36,889,921 (GRCm39)	nonsense	probably null
IGL01409:Ik	APN	18	36,889,974 (GRCm39)	missense	probably damaging	1.00
IGL02282:Ik	APN	18	36,878,697 (GRCm39)	missense	probably damaging	0.99
IGL02422:Ik	APN	18	36,886,313 (GRCm39)	critical splice acceptor site	probably null
IGL03263:Ik	APN	18	36,881,699 (GRCm39)	missense	probably damaging	0.98
IGL03356:Ik	APN	18	36,889,657 (GRCm39)	missense	probably damaging	1.00
R0675:Ik	UTSW	18	36,880,386 (GRCm39)	unclassified	probably benign
R1778:Ik	UTSW	18	36,889,871 (GRCm39)	unclassified	probably benign
R4060:Ik	UTSW	18	36,881,943 (GRCm39)	missense	probably damaging	0.96
R4606:Ik	UTSW	18	36,886,608 (GRCm39)	missense	possibly damaging	0.68
R4684:Ik	UTSW	18	36,885,467 (GRCm39)	missense	probably damaging	1.00
R4819:Ik	UTSW	18	36,886,310 (GRCm39)	splice site	probably null
R4978:Ik	UTSW	18	36,880,468 (GRCm39)	missense	possibly damaging	0.54
R5256:Ik	UTSW	18	36,881,926 (GRCm39)	missense	probably benign	0.00
R5751:Ik	UTSW	18	36,886,566 (GRCm39)	missense	probably benign	0.07
R5966:Ik	UTSW	18	36,888,531 (GRCm39)	missense	possibly damaging	0.50
R6378:Ik	UTSW	18	36,890,341 (GRCm39)	missense	probably damaging	1.00
R6952:Ik	UTSW	18	36,886,613 (GRCm39)	missense	probably damaging	1.00
R7068:Ik	UTSW	18	36,888,518 (GRCm39)	missense	possibly damaging	0.57
R7143:Ik	UTSW	18	36,884,230 (GRCm39)	missense	probably damaging	1.00
R7242:Ik	UTSW	18	36,881,275 (GRCm39)	missense	probably null	1.00
R9251:Ik	UTSW	18	36,880,495 (GRCm39)	critical splice donor site	probably null
R9483:Ik	UTSW	18	36,886,635 (GRCm39)	missense	probably benign	0.20
R9565:Ik	UTSW	18	36,886,959 (GRCm39)	missense	probably benign	0.00
R9694:Ik	UTSW	18	36,877,840 (GRCm39)	missense	probably benign
R9715:Ik	UTSW	18	36,886,566 (GRCm39)	missense	probably benign	0.07
Z1088:Ik	UTSW	18	36,877,835 (GRCm39)	nonsense	probably null
Z1176:Ik	UTSW	18	36,886,568 (GRCm39)	missense	possibly damaging	0.71

Posted On

2013-12-09