Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01548:Hacl1'

93201

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Hacl1

Ensembl Gene

ENSMUSG00000021884

Gene Name

2-hydroxyacyl-CoA lyase 1

Synonyms

Phyh2, Hpcl, 1600020H07Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01548

Quality Score

Status

Chromosome

Chromosomal Location

31329183-31364201 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 31362553 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 31 (D31E)

Ref Sequence

ENSEMBL: ENSMUSP00000114879 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022437] [ENSMUST00000090147] [ENSMUST00000127204] [ENSMUST00000128629] [ENSMUST00000134626] [ENSMUST00000171414] [ENSMUST00000165955] [ENSMUST00000167066] [ENSMUST00000156431] [ENSMUST00000167175]

AlphaFold

Q9QXE0

Predicted Effect

probably benign
Transcript: ENSMUST00000022437
AA Change: D31E

PolyPhen 2 Score 0.085 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000022437
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	185	6.1e-46	PFAM
Pfam:TPP_enzyme_M	206	335	1.9e-34	PFAM
Pfam:TPP_enzyme_C	400	560	1.6e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000090147

SMART Domains

Protein: ENSMUSP00000087608
Gene: ENSMUSG00000021900

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
Pfam:CN_hydrolase	63	287	3.9e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000127204
AA Change: D31E

PolyPhen 2 Score 0.085 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000120452
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	81	1.3e-14	PFAM
Pfam:TPP_enzyme_N	75	159	3.3e-14	PFAM
Pfam:TPP_enzyme_M	179	310	1.5e-34	PFAM
Pfam:TPP_enzyme_C	373	533	7.2e-28	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128014

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128629

SMART Domains

Protein: ENSMUSP00000125890
Gene: ENSMUSG00000021884

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	10	58	2.6e-7	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000134626
AA Change: D31E

PolyPhen 2 Score 0.779 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000114879
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	67	3e-11	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135751

Predicted Effect

possibly damaging
Transcript: ENSMUST00000171414
AA Change: D31E

PolyPhen 2 Score 0.611 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000130268
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	109	1.3e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165955
AA Change: D31E

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000129090
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	105	3.7e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000167066
AA Change: D31E

PolyPhen 2 Score 0.085 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000132913
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	131	2.5e-33	PFAM
Pfam:TPP_enzyme_M	180	311	4.7e-34	PFAM
Pfam:TPP_enzyme_C	340	500	6.4e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156431
AA Change: D31E

PolyPhen 2 Score 0.085 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000114922
Gene: ENSMUSG00000021884
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	186	3.3e-46	PFAM
Pfam:TPP_enzyme_M	206	337	2.1e-34	PFAM
Pfam:TPP_enzyme_C	400	560	1.6e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000167175
AA Change: D31E

PolyPhen 2 Score 0.059 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000128588
Gene: ENSMUSG00000115022
AA Change: D31E

Domain	Start	End	E-Value	Type
Pfam:TPP_enzyme_N	17	139	3.6e-35	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155210

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156189

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot3	C	T	12: 84,103,863 (GRCm39)	T224I	probably benign	Het
Adamts18	C	T	8: 114,490,931 (GRCm39)	G512E	probably damaging	Het
Atp4b	A	G	8: 13,439,679 (GRCm39)	I181T	probably damaging	Het
Bcl11a	A	G	11: 24,113,346 (GRCm39)	I230V	probably benign	Het
Cenpj	C	A	14: 56,769,776 (GRCm39)	V1138L	probably benign	Het
Cep78	A	G	19: 15,958,564 (GRCm39)		probably benign	Het
Clec2j	T	A	6: 128,632,941 (GRCm39)		noncoding transcript	Het
Col5a3	T	C	9: 20,714,296 (GRCm39)		probably benign	Het
Cpne6	A	T	14: 55,750,183 (GRCm39)	T105S	probably damaging	Het
Csmd1	A	T	8: 16,338,660 (GRCm39)	Y482*	probably null	Het
Ctrl	C	A	8: 106,659,890 (GRCm39)		probably benign	Het
Dhcr24	T	A	4: 106,431,068 (GRCm39)	C252*	probably null	Het
Dnaaf9	T	C	2: 130,656,179 (GRCm39)	N110D	probably damaging	Het
Dnah17	G	A	11: 117,989,438 (GRCm39)	P1261S	probably benign	Het
Dnai2	T	C	11: 114,643,768 (GRCm39)	L466P	probably damaging	Het
Dync2h1	A	T	9: 7,071,922 (GRCm39)	F3036Y	probably damaging	Het
Eef1akmt2	A	C	7: 132,433,134 (GRCm39)	S191A	probably damaging	Het
Fat4	G	A	3: 39,063,406 (GRCm39)	C4454Y	probably damaging	Het
Fat4	T	C	3: 38,941,907 (GRCm39)	S267P	probably damaging	Het
Frrs1	T	C	3: 116,678,834 (GRCm39)	C219R	probably damaging	Het
Gabra6	T	A	11: 42,207,850 (GRCm39)	Q207L	probably damaging	Het
Gm19668	A	T	10: 77,634,242 (GRCm39)	C242*	probably null	Het
Gm2840	G	A	5: 96,322,136 (GRCm39)		noncoding transcript	Het
Gmcl1p1	G	A	X: 3,078,226 (GRCm39)	G423S	probably benign	Het
Golim4	C	T	3: 75,815,432 (GRCm39)		probably null	Het
Gucy1b1	G	T	3: 81,942,169 (GRCm39)	T530K	probably damaging	Het
Hectd4	A	G	5: 121,502,723 (GRCm39)	T4276A	possibly damaging	Het
Henmt1	T	C	3: 108,850,095 (GRCm39)	I26T	probably damaging	Het
Hspa1l	G	A	17: 35,197,367 (GRCm39)	A469T	probably damaging	Het
Htra3	T	A	5: 35,821,420 (GRCm39)		probably null	Het
Lrrc28	C	A	7: 67,278,042 (GRCm39)		probably null	Het
Mfhas1	T	C	8: 36,057,613 (GRCm39)	L696P	probably damaging	Het
Mios	A	G	6: 8,234,252 (GRCm39)	K808E	possibly damaging	Het
Mtnr1b	A	G	9: 15,774,496 (GRCm39)	Y188H	probably damaging	Het
Myom1	A	G	17: 71,408,215 (GRCm39)		probably benign	Het
Naca	A	T	10: 127,876,773 (GRCm39)		probably benign	Het
Nckap1l	T	A	15: 103,371,147 (GRCm39)	V213D	probably benign	Het
Ndufa6	C	T	15: 82,238,282 (GRCm39)	V50M	possibly damaging	Het
Or4c35	T	A	2: 89,808,883 (GRCm39)	F254I	possibly damaging	Het
Or5b111	A	G	19: 13,291,350 (GRCm39)	F100L	possibly damaging	Het
Or5g23	A	G	2: 85,439,105 (GRCm39)	W50R	probably benign	Het
Or8b56	A	G	9: 38,739,646 (GRCm39)	T220A	probably benign	Het
Or8k53	T	A	2: 86,178,077 (GRCm39)	Y11F	possibly damaging	Het
Osbpl1a	T	C	18: 12,896,632 (GRCm39)	Y311C	probably damaging	Het
Parp11	A	C	6: 127,468,562 (GRCm39)	Y204S	probably damaging	Het
Pla2g4a	A	G	1: 149,808,407 (GRCm39)		probably null	Het
Plec	T	C	15: 76,073,458 (GRCm39)	R519G	probably benign	Het
Ppp2r5c	T	A	12: 110,534,261 (GRCm39)	Y375N	probably benign	Het
Prss35	C	A	9: 86,637,327 (GRCm39)	S32R	probably benign	Het
Prss57	C	T	10: 79,621,581 (GRCm39)		probably benign	Het
Ptprc	A	C	1: 138,027,219 (GRCm39)		probably null	Het
Rims1	A	G	1: 22,577,683 (GRCm39)	C188R	probably damaging	Het
Ripk4	G	T	16: 97,552,696 (GRCm39)	Y144*	probably null	Het
Rpgrip1	A	T	14: 52,363,728 (GRCm39)		probably benign	Het
Rps6ka4	A	G	19: 6,809,691 (GRCm39)	V378A	probably benign	Het
Rtf1	A	G	2: 119,542,589 (GRCm39)	K298E	probably benign	Het
Sdk1	T	C	5: 142,071,520 (GRCm39)	F1237L	possibly damaging	Het
Slc40a1	T	C	1: 45,948,652 (GRCm39)	K543E	probably benign	Het
Slco1a8	A	G	6: 141,938,238 (GRCm39)	I227T	possibly damaging	Het
Sorcs3	A	T	19: 48,782,607 (GRCm39)	I1041F	possibly damaging	Het
Spata31e4	A	G	13: 50,854,414 (GRCm39)	T91A	probably benign	Het
Spata31f3	T	C	4: 42,868,564 (GRCm39)	E353G	probably benign	Het
Taok3	T	C	5: 117,410,262 (GRCm39)	M818T	probably benign	Het
Tas2r119	T	A	15: 32,178,123 (GRCm39)	F230I	probably damaging	Het
Tbc1d8	T	C	1: 39,420,385 (GRCm39)	D716G	probably damaging	Het
Tfg	A	G	16: 56,521,465 (GRCm39)	S58P	probably damaging	Het
Thnsl1	A	G	2: 21,217,943 (GRCm39)	I45V	probably damaging	Het
Tle1	A	G	4: 72,088,955 (GRCm39)	L96P	probably damaging	Het
Tmem260	A	C	14: 48,717,782 (GRCm39)	S276R	possibly damaging	Het
Utp20	A	G	10: 88,600,643 (GRCm39)	S24P	probably damaging	Het
Vcam1	T	C	3: 115,909,600 (GRCm39)	I576V	probably benign	Het
Vmn1r27	G	T	6: 58,192,538 (GRCm39)	N105K	probably benign	Het
Vmn2r12	A	C	5: 109,240,893 (GRCm39)	Y73*	probably null	Het
Vmn2r86	T	C	10: 130,282,151 (GRCm39)	I822V	probably benign	Het
Wdr6	C	T	9: 108,452,096 (GRCm39)	V596I	possibly damaging	Het
Zfp946	A	T	17: 22,673,643 (GRCm39)	K132N	possibly damaging	Het

Other mutations in Hacl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01358:Hacl1	APN	14	31,348,374 (GRCm39)	missense	probably benign	0.04
IGL01952:Hacl1	APN	14	31,363,079 (GRCm39)	unclassified	probably benign
IGL02059:Hacl1	APN	14	31,354,891 (GRCm39)	missense	probably benign	0.00
IGL02138:Hacl1	APN	14	31,352,940 (GRCm39)	missense	probably benign	0.05
IGL02637:Hacl1	APN	14	31,362,458 (GRCm39)	missense	probably damaging	1.00
IGL03235:Hacl1	APN	14	31,352,995 (GRCm39)	nonsense	probably null
R0502:Hacl1	UTSW	14	31,344,941 (GRCm39)	splice site	probably benign
R1697:Hacl1	UTSW	14	31,342,957 (GRCm39)	splice site	probably null
R1800:Hacl1	UTSW	14	31,336,221 (GRCm39)	missense	probably damaging	1.00
R1829:Hacl1	UTSW	14	31,362,491 (GRCm39)	missense	probably benign	0.00
R3937:Hacl1	UTSW	14	31,356,148 (GRCm39)	splice site	probably benign
R3938:Hacl1	UTSW	14	31,356,148 (GRCm39)	splice site	probably benign
R5004:Hacl1	UTSW	14	31,340,996 (GRCm39)	missense	probably benign
R5776:Hacl1	UTSW	14	31,344,828 (GRCm39)	missense	possibly damaging	0.90
R5868:Hacl1	UTSW	14	31,341,873 (GRCm39)	missense	probably damaging	1.00
R5929:Hacl1	UTSW	14	31,338,345 (GRCm39)	missense	probably benign	0.04
R6261:Hacl1	UTSW	14	31,357,728 (GRCm39)	missense	probably damaging	1.00
R6996:Hacl1	UTSW	14	31,337,380 (GRCm39)	missense	possibly damaging	0.96
R7298:Hacl1	UTSW	14	31,338,443 (GRCm39)	missense	probably damaging	1.00
R7768:Hacl1	UTSW	14	31,338,437 (GRCm39)	missense	probably damaging	1.00
R7887:Hacl1	UTSW	14	31,356,184 (GRCm39)	missense	probably damaging	1.00
R8384:Hacl1	UTSW	14	31,356,154 (GRCm39)	critical splice donor site	probably null
R9139:Hacl1	UTSW	14	31,338,338 (GRCm39)	missense	probably benign	0.00
R9571:Hacl1	UTSW	14	31,344,838 (GRCm39)	missense	possibly damaging	0.72
R9598:Hacl1	UTSW	14	31,332,197 (GRCm39)	missense	probably benign	0.05
R9780:Hacl1	UTSW	14	31,362,519 (GRCm39)	missense	possibly damaging	0.95

Posted On

2013-12-09