Incidental Mutation 'R1023:Spata2'
ID 94593
Institutional Source Beutler Lab
Gene Symbol Spata2
Ensembl Gene ENSMUSG00000047030
Gene Name spermatogenesis associated 2
Synonyms
MMRRC Submission 039125-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock # R1023 (G1)
Quality Score 225
Status Validated
Chromosome 2
Chromosomal Location 167481133-167492887 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 167485222 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 85 (M85T)
Ref Sequence ENSEMBL: ENSMUSP00000104834 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057627] [ENSMUST00000109211]
AlphaFold Q8K004
Predicted Effect probably benign
Transcript: ENSMUST00000057627
AA Change: M85T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000057095
Gene: ENSMUSG00000047030
AA Change: M85T

DomainStartEndE-ValueType
low complexity region 66 79 N/A INTRINSIC
low complexity region 288 299 N/A INTRINSIC
low complexity region 306 318 N/A INTRINSIC
low complexity region 399 412 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000109211
AA Change: M85T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000104834
Gene: ENSMUSG00000047030
AA Change: M85T

DomainStartEndE-ValueType
low complexity region 66 79 N/A INTRINSIC
low complexity region 288 299 N/A INTRINSIC
low complexity region 306 318 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126389
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147051
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154770
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155875
Meta Mutation Damage Score 0.0851 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.0%
  • 10x: 95.6%
  • 20x: 90.7%
Validation Efficiency 100% (42/42)
MGI Phenotype PHENOTYPE: Homozygous knockout leads to small testes, oligospermia, asthenozoospermia, reduced male fertility and decreased male germ cell numbers. It also affects necroptosis and increases inflammatory responses. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik C T 3: 138,066,871 A607V probably damaging Het
4930523C07Rik A G 1: 160,077,487 probably benign Het
Ap3d1 A T 10: 80,714,258 L713Q probably damaging Het
Baz2a A G 10: 128,121,807 T1010A possibly damaging Het
Cd163l1 T A 7: 140,224,463 C484S possibly damaging Het
Cdh15 T C 8: 122,865,200 I608T probably damaging Het
Cdkl2 A T 5: 92,039,286 D40E possibly damaging Het
Col9a2 G A 4: 121,044,010 G118R unknown Het
Cryge C A 1: 65,050,786 C79F probably damaging Het
Dapk1 T C 13: 60,730,985 L596P probably damaging Het
Dqx1 G A 6: 83,061,089 C486Y probably damaging Het
Enam A G 5: 88,501,967 Q445R probably damaging Het
Gm10608 CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 9: 119,160,716 probably benign Het
Gnpat A T 8: 124,870,780 D27V probably benign Het
Htr5a A T 5: 27,842,998 T184S possibly damaging Het
Lap3 C T 5: 45,495,211 P50S probably benign Het
Mamdc2 A T 19: 23,310,907 M589K probably damaging Het
Mast4 A G 13: 102,735,496 S2263P probably benign Het
Mef2b C T 8: 70,165,597 P109L possibly damaging Het
Meltf T A 16: 31,884,960 F168L probably damaging Het
Mib2 C T 4: 155,659,460 G42S probably damaging Het
Nup205 T A 6: 35,234,706 F1661I probably damaging Het
Olfr187 A T 16: 59,035,815 N307K probably benign Het
Olfr747 A T 14: 50,681,016 L206H probably damaging Het
Plac8 A T 5: 100,556,581 D83E probably benign Het
Pnpt1 T C 11: 29,141,328 probably benign Het
Pold2 G T 11: 5,875,140 Q86K probably benign Het
Ptprt A G 2: 161,558,943 L1057P probably damaging Het
Rev3l A G 10: 39,832,639 H2284R probably damaging Het
Skint6 A C 4: 113,238,103 S120A probably benign Het
Slc1a7 G A 4: 108,007,573 V270M probably damaging Het
Taf1b G T 12: 24,509,559 probably benign Het
Tert A G 13: 73,642,059 N844S probably benign Het
Thrap3 G A 4: 126,180,089 S288L possibly damaging Het
Ubap2l A G 3: 90,047,873 probably benign Het
Ubtf T C 11: 102,311,450 E197G possibly damaging Het
Usp20 G T 2: 31,007,813 G216W probably damaging Het
Wdr60 T C 12: 116,232,657 E490G probably damaging Het
Yy1 T A 12: 108,793,531 V40E unknown Het
Zfp335 G A 2: 164,892,585 H1254Y possibly damaging Het
Other mutations in Spata2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01538:Spata2 APN 2 167484151 missense probably damaging 1.00
IGL01565:Spata2 APN 2 167484294 missense probably damaging 0.96
IGL02661:Spata2 APN 2 167483361 missense probably damaging 1.00
R0402:Spata2 UTSW 2 167483660 missense probably benign
R1672:Spata2 UTSW 2 167483519 missense probably damaging 1.00
R1989:Spata2 UTSW 2 167484314 missense possibly damaging 0.93
R2343:Spata2 UTSW 2 167483360 missense probably damaging 1.00
R2422:Spata2 UTSW 2 167484206 missense probably damaging 1.00
R5156:Spata2 UTSW 2 167483574 missense probably damaging 0.96
R5476:Spata2 UTSW 2 167484159 missense probably damaging 0.99
R6326:Spata2 UTSW 2 167484174 missense possibly damaging 0.47
R7038:Spata2 UTSW 2 167485363 missense possibly damaging 0.56
R7954:Spata2 UTSW 2 167483937 missense probably benign 0.00
R8557:Spata2 UTSW 2 167484307 missense probably damaging 1.00
R9459:Spata2 UTSW 2 167485285 missense probably benign 0.35
X0024:Spata2 UTSW 2 167484446 missense possibly damaging 0.62
Z1177:Spata2 UTSW 2 167483531 missense probably damaging 1.00
Z1177:Spata2 UTSW 2 167483583 missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CAAATGCACATGCCAGGATTCCAG -3'
(R):5'- TTCCATGAGGGCAAAGTGGACAC -3'

Sequencing Primer
(F):5'- GTGCAGAGAATCTTCTCTCAAGC -3'
(R):5'- GCAAAGTGGACACCACCC -3'
Posted On 2014-01-05