Incidental Mutation 'R1131:Vmn1r42'
ID 94608
Institutional Source Beutler Lab
Gene Symbol Vmn1r42
Ensembl Gene ENSMUSG00000068232
Gene Name vomeronasal 1 receptor 42
Synonyms V1ra6
MMRRC Submission 039204-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.059) question?
Stock # R1131 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 89821500-89822597 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 89822551 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Tyrosine at position 6 (F6Y)
Ref Sequence ENSEMBL: ENSMUSP00000154442 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089419] [ENSMUST00000226436] [ENSMUST00000227279]
AlphaFold Q8VBS7
Predicted Effect possibly damaging
Transcript: ENSMUST00000089419
AA Change: F6Y

PolyPhen 2 Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000086840
Gene: ENSMUSG00000068232
AA Change: F6Y

DomainStartEndE-ValueType
Pfam:V1R 54 318 3.6e-132 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000226436
AA Change: F6Y

PolyPhen 2 Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
Predicted Effect possibly damaging
Transcript: ENSMUST00000227279
AA Change: F6Y

PolyPhen 2 Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 96.1%
  • 20x: 91.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 21 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930503B20Rik G T 3: 146,356,837 (GRCm39) H24N probably damaging Het
Ano7 T C 1: 93,329,498 (GRCm39) F723L probably benign Het
Clec9a T G 6: 129,387,278 (GRCm39) C44W probably damaging Het
Commd7 T A 2: 153,464,047 (GRCm39) Q44L probably benign Het
Ddias A T 7: 92,509,094 (GRCm39) S274T possibly damaging Het
Fnip1 A T 11: 54,384,129 (GRCm39) E342V possibly damaging Het
Gata4 A G 14: 63,442,189 (GRCm39) F210S possibly damaging Het
Ggt6 A G 11: 72,326,506 (GRCm39) E21G possibly damaging Het
Gzf1 A G 2: 148,532,787 (GRCm39) N647S probably benign Het
Hnrnpk T C 13: 58,541,979 (GRCm39) probably null Het
Lgr6 G A 1: 134,915,042 (GRCm39) R569W probably damaging Het
Mug1 T A 6: 121,838,144 (GRCm39) I458N probably benign Het
Mzf1 C A 7: 12,786,698 (GRCm39) R124L possibly damaging Het
Or51a25 C A 7: 102,372,887 (GRCm39) R270L probably damaging Het
Spta1 T A 1: 174,013,213 (GRCm39) S375T probably damaging Het
Tanc2 G A 11: 105,725,828 (GRCm39) E331K probably damaging Het
Tcirg1 A G 19: 3,946,301 (GRCm39) S799P probably damaging Het
Tnrc18 T A 5: 142,772,963 (GRCm39) D439V unknown Het
Tnrc6b A T 15: 80,778,654 (GRCm39) Q1209L possibly damaging Het
Trim24 T A 6: 37,934,717 (GRCm39) C811S probably damaging Het
Ttc7b A T 12: 100,348,378 (GRCm39) probably null Het
Other mutations in Vmn1r42
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02055:Vmn1r42 APN 6 89,822,571 (GRCm39) utr 5 prime probably benign
IGL02151:Vmn1r42 APN 6 89,822,023 (GRCm39) missense possibly damaging 0.90
IGL02158:Vmn1r42 APN 6 89,822,296 (GRCm39) missense probably damaging 0.96
IGL02731:Vmn1r42 APN 6 89,822,407 (GRCm39) missense probably benign 0.41
IGL02738:Vmn1r42 APN 6 89,821,630 (GRCm39) missense possibly damaging 0.69
IGL02817:Vmn1r42 APN 6 89,822,518 (GRCm39) missense probably damaging 1.00
volkan UTSW 6 89,821,949 (GRCm39) missense probably benign 0.00
R1500:Vmn1r42 UTSW 6 89,822,483 (GRCm39) missense probably benign 0.01
R1557:Vmn1r42 UTSW 6 89,821,733 (GRCm39) missense possibly damaging 0.66
R1561:Vmn1r42 UTSW 6 89,822,363 (GRCm39) missense probably damaging 0.99
R1574:Vmn1r42 UTSW 6 89,822,363 (GRCm39) missense probably damaging 0.99
R1574:Vmn1r42 UTSW 6 89,822,059 (GRCm39) missense possibly damaging 0.62
R1574:Vmn1r42 UTSW 6 89,822,059 (GRCm39) missense possibly damaging 0.62
R1857:Vmn1r42 UTSW 6 89,821,597 (GRCm39) missense probably benign 0.28
R1858:Vmn1r42 UTSW 6 89,821,597 (GRCm39) missense probably benign 0.28
R1916:Vmn1r42 UTSW 6 89,821,949 (GRCm39) missense probably benign 0.00
R2284:Vmn1r42 UTSW 6 89,821,681 (GRCm39) missense probably benign 0.26
R2912:Vmn1r42 UTSW 6 89,821,688 (GRCm39) missense probably benign
R4541:Vmn1r42 UTSW 6 89,822,533 (GRCm39) missense probably benign
R5085:Vmn1r42 UTSW 6 89,821,598 (GRCm39) missense probably benign 0.00
R5384:Vmn1r42 UTSW 6 89,822,366 (GRCm39) missense probably damaging 1.00
R5616:Vmn1r42 UTSW 6 89,822,084 (GRCm39) missense possibly damaging 0.66
R5647:Vmn1r42 UTSW 6 89,822,314 (GRCm39) missense probably benign 0.43
R5867:Vmn1r42 UTSW 6 89,821,761 (GRCm39) nonsense probably null
R6569:Vmn1r42 UTSW 6 89,822,425 (GRCm39) missense probably damaging 1.00
R6852:Vmn1r42 UTSW 6 89,821,769 (GRCm39) missense possibly damaging 0.71
R7054:Vmn1r42 UTSW 6 89,822,051 (GRCm39) missense possibly damaging 0.90
R7399:Vmn1r42 UTSW 6 89,822,495 (GRCm39) missense probably benign 0.27
R7958:Vmn1r42 UTSW 6 89,822,059 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- GCCTGTGCCCACGAATGAACTTTAG -3'
(R):5'- CCAAATACGATGCTGTTCCTGCTCC -3'

Sequencing Primer
(F):5'- CACGAATGAACTTTAGGATGTGGAC -3'
(R):5'- TCCTGCTCCAGGAAAAAAAAATTAC -3'
Posted On 2014-01-05