Incidental Mutation 'R1131:Vmn1r42'
ID |
94608 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r42
|
Ensembl Gene |
ENSMUSG00000068232 |
Gene Name |
vomeronasal 1 receptor 42 |
Synonyms |
V1ra6 |
MMRRC Submission |
039204-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.059)
|
Stock # |
R1131 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
89821500-89822597 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 89822551 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Tyrosine
at position 6
(F6Y)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154442
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089419]
[ENSMUST00000226436]
[ENSMUST00000227279]
|
AlphaFold |
Q8VBS7 |
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000089419
AA Change: F6Y
PolyPhen 2
Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
|
SMART Domains |
Protein: ENSMUSP00000086840 Gene: ENSMUSG00000068232 AA Change: F6Y
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
54 |
318 |
3.6e-132 |
PFAM |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000226436
AA Change: F6Y
PolyPhen 2
Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000227279
AA Change: F6Y
PolyPhen 2
Score 0.881 (Sensitivity: 0.82; Specificity: 0.94)
|
Coding Region Coverage |
- 1x: 99.0%
- 3x: 98.2%
- 10x: 96.1%
- 20x: 91.8%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 21 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930503B20Rik |
G |
T |
3: 146,356,837 (GRCm39) |
H24N |
probably damaging |
Het |
Ano7 |
T |
C |
1: 93,329,498 (GRCm39) |
F723L |
probably benign |
Het |
Clec9a |
T |
G |
6: 129,387,278 (GRCm39) |
C44W |
probably damaging |
Het |
Commd7 |
T |
A |
2: 153,464,047 (GRCm39) |
Q44L |
probably benign |
Het |
Ddias |
A |
T |
7: 92,509,094 (GRCm39) |
S274T |
possibly damaging |
Het |
Fnip1 |
A |
T |
11: 54,384,129 (GRCm39) |
E342V |
possibly damaging |
Het |
Gata4 |
A |
G |
14: 63,442,189 (GRCm39) |
F210S |
possibly damaging |
Het |
Ggt6 |
A |
G |
11: 72,326,506 (GRCm39) |
E21G |
possibly damaging |
Het |
Gzf1 |
A |
G |
2: 148,532,787 (GRCm39) |
N647S |
probably benign |
Het |
Hnrnpk |
T |
C |
13: 58,541,979 (GRCm39) |
|
probably null |
Het |
Lgr6 |
G |
A |
1: 134,915,042 (GRCm39) |
R569W |
probably damaging |
Het |
Mug1 |
T |
A |
6: 121,838,144 (GRCm39) |
I458N |
probably benign |
Het |
Mzf1 |
C |
A |
7: 12,786,698 (GRCm39) |
R124L |
possibly damaging |
Het |
Or51a25 |
C |
A |
7: 102,372,887 (GRCm39) |
R270L |
probably damaging |
Het |
Spta1 |
T |
A |
1: 174,013,213 (GRCm39) |
S375T |
probably damaging |
Het |
Tanc2 |
G |
A |
11: 105,725,828 (GRCm39) |
E331K |
probably damaging |
Het |
Tcirg1 |
A |
G |
19: 3,946,301 (GRCm39) |
S799P |
probably damaging |
Het |
Tnrc18 |
T |
A |
5: 142,772,963 (GRCm39) |
D439V |
unknown |
Het |
Tnrc6b |
A |
T |
15: 80,778,654 (GRCm39) |
Q1209L |
possibly damaging |
Het |
Trim24 |
T |
A |
6: 37,934,717 (GRCm39) |
C811S |
probably damaging |
Het |
Ttc7b |
A |
T |
12: 100,348,378 (GRCm39) |
|
probably null |
Het |
|
Other mutations in Vmn1r42 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02055:Vmn1r42
|
APN |
6 |
89,822,571 (GRCm39) |
utr 5 prime |
probably benign |
|
IGL02151:Vmn1r42
|
APN |
6 |
89,822,023 (GRCm39) |
missense |
possibly damaging |
0.90 |
IGL02158:Vmn1r42
|
APN |
6 |
89,822,296 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02731:Vmn1r42
|
APN |
6 |
89,822,407 (GRCm39) |
missense |
probably benign |
0.41 |
IGL02738:Vmn1r42
|
APN |
6 |
89,821,630 (GRCm39) |
missense |
possibly damaging |
0.69 |
IGL02817:Vmn1r42
|
APN |
6 |
89,822,518 (GRCm39) |
missense |
probably damaging |
1.00 |
volkan
|
UTSW |
6 |
89,821,949 (GRCm39) |
missense |
probably benign |
0.00 |
R1500:Vmn1r42
|
UTSW |
6 |
89,822,483 (GRCm39) |
missense |
probably benign |
0.01 |
R1557:Vmn1r42
|
UTSW |
6 |
89,821,733 (GRCm39) |
missense |
possibly damaging |
0.66 |
R1561:Vmn1r42
|
UTSW |
6 |
89,822,363 (GRCm39) |
missense |
probably damaging |
0.99 |
R1574:Vmn1r42
|
UTSW |
6 |
89,822,363 (GRCm39) |
missense |
probably damaging |
0.99 |
R1574:Vmn1r42
|
UTSW |
6 |
89,822,059 (GRCm39) |
missense |
possibly damaging |
0.62 |
R1574:Vmn1r42
|
UTSW |
6 |
89,822,059 (GRCm39) |
missense |
possibly damaging |
0.62 |
R1857:Vmn1r42
|
UTSW |
6 |
89,821,597 (GRCm39) |
missense |
probably benign |
0.28 |
R1858:Vmn1r42
|
UTSW |
6 |
89,821,597 (GRCm39) |
missense |
probably benign |
0.28 |
R1916:Vmn1r42
|
UTSW |
6 |
89,821,949 (GRCm39) |
missense |
probably benign |
0.00 |
R2284:Vmn1r42
|
UTSW |
6 |
89,821,681 (GRCm39) |
missense |
probably benign |
0.26 |
R2912:Vmn1r42
|
UTSW |
6 |
89,821,688 (GRCm39) |
missense |
probably benign |
|
R4541:Vmn1r42
|
UTSW |
6 |
89,822,533 (GRCm39) |
missense |
probably benign |
|
R5085:Vmn1r42
|
UTSW |
6 |
89,821,598 (GRCm39) |
missense |
probably benign |
0.00 |
R5384:Vmn1r42
|
UTSW |
6 |
89,822,366 (GRCm39) |
missense |
probably damaging |
1.00 |
R5616:Vmn1r42
|
UTSW |
6 |
89,822,084 (GRCm39) |
missense |
possibly damaging |
0.66 |
R5647:Vmn1r42
|
UTSW |
6 |
89,822,314 (GRCm39) |
missense |
probably benign |
0.43 |
R5867:Vmn1r42
|
UTSW |
6 |
89,821,761 (GRCm39) |
nonsense |
probably null |
|
R6569:Vmn1r42
|
UTSW |
6 |
89,822,425 (GRCm39) |
missense |
probably damaging |
1.00 |
R6852:Vmn1r42
|
UTSW |
6 |
89,821,769 (GRCm39) |
missense |
possibly damaging |
0.71 |
R7054:Vmn1r42
|
UTSW |
6 |
89,822,051 (GRCm39) |
missense |
possibly damaging |
0.90 |
R7399:Vmn1r42
|
UTSW |
6 |
89,822,495 (GRCm39) |
missense |
probably benign |
0.27 |
R7958:Vmn1r42
|
UTSW |
6 |
89,822,059 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- GCCTGTGCCCACGAATGAACTTTAG -3'
(R):5'- CCAAATACGATGCTGTTCCTGCTCC -3'
Sequencing Primer
(F):5'- CACGAATGAACTTTAGGATGTGGAC -3'
(R):5'- TCCTGCTCCAGGAAAAAAAAATTAC -3'
|
Posted On |
2014-01-05 |