Incidental Mutation 'R1114:Dctn2'
| ID |
97058 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dctn2
|
| Ensembl Gene |
ENSMUSG00000025410 |
| Gene Name |
dynactin 2 |
| Synonyms |
DCTN-50, C130077D06Rik, 2310042E05Rik, RBP50, p50 |
| MMRRC Submission |
039187-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R1114 (G1)
|
| Quality Score |
157 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
127102237-127117819 bp(+) (GRCm39) |
| Type of Mutation |
splice site (4534 bp from exon) |
| DNA Base Change (assembly) |
T to A
at 127114011 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026476]
[ENSMUST00000026479]
[ENSMUST00000119078]
|
| AlphaFold |
Q99KJ8 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000026476
|
| SMART Domains |
Protein: ENSMUSP00000026476
Gene: ENSMUSG00000025409
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:MBD
|
26 |
79 |
8e-10 |
BLAST |
|
low complexity region
|
80 |
94 |
N/A |
INTRINSIC |
|
low complexity region
|
140 |
155 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
197 |
N/A |
INTRINSIC |
|
low complexity region
|
212 |
229 |
N/A |
INTRINSIC |
|
low complexity region
|
247 |
262 |
N/A |
INTRINSIC |
|
low complexity region
|
269 |
295 |
N/A |
INTRINSIC |
|
low complexity region
|
311 |
342 |
N/A |
INTRINSIC |
|
low complexity region
|
347 |
378 |
N/A |
INTRINSIC |
|
low complexity region
|
383 |
428 |
N/A |
INTRINSIC |
|
low complexity region
|
442 |
455 |
N/A |
INTRINSIC |
|
low complexity region
|
461 |
498 |
N/A |
INTRINSIC |
|
low complexity region
|
500 |
517 |
N/A |
INTRINSIC |
|
low complexity region
|
533 |
563 |
N/A |
INTRINSIC |
|
low complexity region
|
566 |
634 |
N/A |
INTRINSIC |
|
low complexity region
|
636 |
652 |
N/A |
INTRINSIC |
|
low complexity region
|
653 |
674 |
N/A |
INTRINSIC |
|
low complexity region
|
676 |
686 |
N/A |
INTRINSIC |
|
low complexity region
|
733 |
799 |
N/A |
INTRINSIC |
|
low complexity region
|
815 |
849 |
N/A |
INTRINSIC |
|
low complexity region
|
853 |
890 |
N/A |
INTRINSIC |
|
low complexity region
|
949 |
958 |
N/A |
INTRINSIC |
|
low complexity region
|
978 |
1002 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000026479
AA Change: I317N
PolyPhen 2
Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000026479
Gene: ENSMUSG00000025410
AA Change: I317N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Dynamitin
|
16 |
400 |
7.1e-129 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000119078
|
| SMART Domains |
Protein: ENSMUSP00000112805
Gene: ENSMUSG00000025409
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:MBD
|
26 |
79 |
8e-10 |
BLAST |
|
low complexity region
|
80 |
94 |
N/A |
INTRINSIC |
|
low complexity region
|
140 |
155 |
N/A |
INTRINSIC |
|
low complexity region
|
183 |
197 |
N/A |
INTRINSIC |
|
low complexity region
|
212 |
229 |
N/A |
INTRINSIC |
|
low complexity region
|
247 |
262 |
N/A |
INTRINSIC |
|
low complexity region
|
269 |
295 |
N/A |
INTRINSIC |
|
low complexity region
|
311 |
342 |
N/A |
INTRINSIC |
|
low complexity region
|
347 |
378 |
N/A |
INTRINSIC |
|
low complexity region
|
383 |
428 |
N/A |
INTRINSIC |
|
low complexity region
|
442 |
455 |
N/A |
INTRINSIC |
|
low complexity region
|
461 |
498 |
N/A |
INTRINSIC |
|
low complexity region
|
500 |
517 |
N/A |
INTRINSIC |
|
low complexity region
|
533 |
563 |
N/A |
INTRINSIC |
|
low complexity region
|
566 |
634 |
N/A |
INTRINSIC |
|
low complexity region
|
636 |
652 |
N/A |
INTRINSIC |
|
low complexity region
|
653 |
674 |
N/A |
INTRINSIC |
|
low complexity region
|
676 |
686 |
N/A |
INTRINSIC |
|
low complexity region
|
733 |
798 |
N/A |
INTRINSIC |
|
low complexity region
|
813 |
847 |
N/A |
INTRINSIC |
|
low complexity region
|
851 |
888 |
N/A |
INTRINSIC |
|
low complexity region
|
947 |
956 |
N/A |
INTRINSIC |
|
low complexity region
|
976 |
1000 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000126243
|
| SMART Domains |
Protein: ENSMUSP00000115238
Gene: ENSMUSG00000025409
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
1 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
31 |
76 |
N/A |
INTRINSIC |
|
low complexity region
|
90 |
103 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
146 |
N/A |
INTRINSIC |
|
low complexity region
|
148 |
165 |
N/A |
INTRINSIC |
|
low complexity region
|
181 |
211 |
N/A |
INTRINSIC |
|
low complexity region
|
214 |
282 |
N/A |
INTRINSIC |
|
low complexity region
|
284 |
300 |
N/A |
INTRINSIC |
|
low complexity region
|
301 |
322 |
N/A |
INTRINSIC |
|
low complexity region
|
324 |
334 |
N/A |
INTRINSIC |
|
low complexity region
|
381 |
446 |
N/A |
INTRINSIC |
|
low complexity region
|
462 |
496 |
N/A |
INTRINSIC |
|
low complexity region
|
500 |
537 |
N/A |
INTRINSIC |
|
low complexity region
|
596 |
610 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000136169
|
| SMART Domains |
Protein: ENSMUSP00000122504
Gene: ENSMUSG00000025409
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
55 |
64 |
N/A |
INTRINSIC |
|
low complexity region
|
84 |
108 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000154851
|
| SMART Domains |
Protein: ENSMUSP00000133835
Gene: ENSMUSG00000025409
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
61 |
N/A |
INTRINSIC |
|
low complexity region
|
72 |
81 |
N/A |
INTRINSIC |
|
low complexity region
|
101 |
125 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000218556
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000220418
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000218752
|
| Meta Mutation Damage Score |
0.6524 |
| Coding Region Coverage |
- 1x: 98.7%
- 3x: 97.5%
- 10x: 93.5%
- 20x: 84.2%
|
| Validation Efficiency |
100% (47/47) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a 50-kD subunit of dynactin, a macromolecular complex consisting of 10-11 subunits ranging in size from 22 to 150 kD. Dynactin binds to both microtubules and cytoplasmic dynein. It is involved in a diverse array of cellular functions, including ER-to-Golgi transport, the centripetal movement of lysosomes and endosomes, spindle formation, chromosome movement, nuclear positioning, and axonogenesis. This subunit is present in 4-5 copies per dynactin molecule. It contains three short alpha-helical coiled-coil domains that may mediate association with self or other dynactin subunits. It may interact directly with the largest subunit (p150) of dynactin and may affix p150 in place. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, May 2012]
|
| Allele List at MGI |
All alleles(28) : Targeted(3) Gene trapped(25)
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700128F08Rik |
T |
A |
9: 8,222,179 (GRCm39) |
|
noncoding transcript |
Het |
| Acss3 |
T |
A |
10: 106,824,740 (GRCm39) |
R422S |
possibly damaging |
Het |
| Asb15 |
G |
A |
6: 24,567,176 (GRCm39) |
R499H |
probably damaging |
Het |
| Aspm |
C |
T |
1: 139,389,662 (GRCm39) |
|
probably benign |
Het |
| Camk2d |
G |
A |
3: 126,633,941 (GRCm39) |
V488M |
probably damaging |
Het |
| Cd247 |
A |
G |
1: 165,616,407 (GRCm39) |
K4E |
probably benign |
Het |
| Cdh20 |
A |
G |
1: 104,906,739 (GRCm39) |
D522G |
probably damaging |
Het |
| Cse1l |
T |
A |
2: 166,783,123 (GRCm39) |
|
probably benign |
Het |
| Dpy19l1 |
A |
T |
9: 24,336,072 (GRCm39) |
F545I |
probably benign |
Het |
| Dpy19l4 |
A |
G |
4: 11,287,643 (GRCm39) |
|
probably benign |
Het |
| Dsg4 |
A |
T |
18: 20,599,540 (GRCm39) |
T719S |
possibly damaging |
Het |
| Dusp12 |
A |
C |
1: 170,708,586 (GRCm39) |
V48G |
probably damaging |
Het |
| Efcab7 |
A |
T |
4: 99,735,452 (GRCm39) |
R159* |
probably null |
Het |
| Fabp3 |
C |
T |
4: 130,206,180 (GRCm39) |
T57I |
probably benign |
Het |
| Fbxw20 |
A |
G |
9: 109,052,550 (GRCm39) |
V261A |
probably damaging |
Het |
| Gtf3c3 |
C |
T |
1: 54,456,937 (GRCm39) |
A488T |
probably damaging |
Het |
| Inpp5j |
C |
A |
11: 3,444,814 (GRCm39) |
R953L |
possibly damaging |
Het |
| Itprid2 |
A |
G |
2: 79,487,873 (GRCm39) |
E652G |
probably damaging |
Het |
| Lrrk2 |
C |
T |
15: 91,584,671 (GRCm39) |
R363* |
probably null |
Het |
| Ltbp1 |
A |
G |
17: 75,667,770 (GRCm39) |
D1089G |
probably benign |
Het |
| Luc7l |
T |
C |
17: 26,494,832 (GRCm39) |
|
probably benign |
Het |
| Mdn1 |
G |
A |
4: 32,746,568 (GRCm39) |
|
probably null |
Het |
| Mgat4a |
A |
T |
1: 37,503,487 (GRCm39) |
|
probably benign |
Het |
| Mmp12 |
A |
G |
9: 7,358,289 (GRCm39) |
T392A |
possibly damaging |
Het |
| Nlrp12 |
A |
G |
7: 3,277,166 (GRCm39) |
V921A |
probably benign |
Het |
| Or5m5 |
A |
T |
2: 85,814,651 (GRCm39) |
I156F |
probably benign |
Het |
| Or5t7 |
G |
A |
2: 86,507,629 (GRCm39) |
T16I |
possibly damaging |
Het |
| Or6c8b |
T |
A |
10: 128,882,711 (GRCm39) |
I74F |
possibly damaging |
Het |
| Pkd2l1 |
T |
C |
19: 44,179,983 (GRCm39) |
|
probably benign |
Het |
| Pramel24 |
A |
G |
4: 143,453,425 (GRCm39) |
I178V |
probably benign |
Het |
| Rictor |
C |
A |
15: 6,823,486 (GRCm39) |
C1554* |
probably null |
Het |
| Ryr2 |
A |
G |
13: 11,960,867 (GRCm39) |
C24R |
probably damaging |
Het |
| Scamp2 |
T |
A |
9: 57,488,863 (GRCm39) |
I188N |
probably damaging |
Het |
| Smg1 |
A |
T |
7: 117,759,013 (GRCm39) |
|
probably benign |
Het |
| Sned1 |
G |
A |
1: 93,209,376 (GRCm39) |
V830M |
possibly damaging |
Het |
| Synrg |
C |
A |
11: 83,914,262 (GRCm39) |
|
probably benign |
Het |
| Syt9 |
G |
T |
7: 107,024,562 (GRCm39) |
V152F |
possibly damaging |
Het |
| Trmt2a |
A |
G |
16: 18,068,304 (GRCm39) |
|
probably benign |
Het |
| Vmn2r100 |
T |
C |
17: 19,752,261 (GRCm39) |
I831T |
probably damaging |
Het |
| Vps13a |
G |
T |
19: 16,727,515 (GRCm39) |
H196N |
probably benign |
Het |
| Xdh |
T |
C |
17: 74,248,144 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Dctn2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00334:Dctn2
|
APN |
10 |
127,113,559 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01749:Dctn2
|
APN |
10 |
127,117,286 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
IGL01797:Dctn2
|
APN |
10 |
127,113,182 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL02021:Dctn2
|
APN |
10 |
127,110,926 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02335:Dctn2
|
APN |
10 |
127,111,690 (GRCm39) |
splice site |
probably benign |
|
|
IGL02748:Dctn2
|
APN |
10 |
127,113,142 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03382:Dctn2
|
APN |
10 |
127,114,057 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0069:Dctn2
|
UTSW |
10 |
127,113,354 (GRCm39) |
splice site |
probably null |
|
|
R0069:Dctn2
|
UTSW |
10 |
127,113,354 (GRCm39) |
splice site |
probably null |
|
|
R0621:Dctn2
|
UTSW |
10 |
127,113,809 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1917:Dctn2
|
UTSW |
10 |
127,110,918 (GRCm39) |
nonsense |
probably null |
|
|
R2238:Dctn2
|
UTSW |
10 |
127,112,257 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4097:Dctn2
|
UTSW |
10 |
127,113,362 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4418:Dctn2
|
UTSW |
10 |
127,114,234 (GRCm39) |
missense |
probably benign |
0.24 |
|
R4972:Dctn2
|
UTSW |
10 |
127,112,572 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6873:Dctn2
|
UTSW |
10 |
127,112,105 (GRCm39) |
splice site |
probably null |
|
|
R7533:Dctn2
|
UTSW |
10 |
127,103,347 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R7557:Dctn2
|
UTSW |
10 |
127,114,273 (GRCm39) |
missense |
probably benign |
0.44 |
|
R7657:Dctn2
|
UTSW |
10 |
127,102,383 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8218:Dctn2
|
UTSW |
10 |
127,112,398 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8557:Dctn2
|
UTSW |
10 |
127,114,062 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9344:Dctn2
|
UTSW |
10 |
127,114,084 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGATTGCTAAGCACAAGGCATCCG -3'
(R):5'- AAGTGTGTCAGGAGCTGACCAAAC -3'
Sequencing Primer
(F):5'- CAAGGTCAGGAGCTGTCTTCTC -3'
(R):5'- TGACCAAACTGCATAGCTGC -3'
|
| Posted On |
2014-01-05 |
Incidental Mutation