Mutagenetix > Incidental Mutation

Incidental Mutation 'R1118:Grina'

97603

Institutional Source

Beutler Lab

Gene Symbol

Grina

Ensembl Gene

ENSMUSG00000022564

Gene Name

glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

Synonyms

Tmbim3, 1110025J15Rik

MMRRC Submission

039191-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.253) question?

Stock #

R1118 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

76130964-76134104 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 76132779 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 182 (F182S)

Ref Sequence

ENSEMBL: ENSMUSP00000023225 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023225] [ENSMUST00000229380] [ENSMUST00000229772] [ENSMUST00000230347]

AlphaFold

Q9ESF4

Predicted Effect

probably damaging
Transcript: ENSMUST00000023225
AA Change: F182S

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000023225
Gene: ENSMUSG00000022564
AA Change: F182S

Domain	Start	End	E-Value	Type
low complexity region	27	101	N/A	INTRINSIC
Pfam:Bax1-I	133	340	6.9e-40	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184745

Predicted Effect

probably benign
Transcript: ENSMUST00000229380

Predicted Effect

probably benign
Transcript: ENSMUST00000229772

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229916

Predicted Effect

probably benign
Transcript: ENSMUST00000230347

Meta Mutation Damage Score

0.8610

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.7%
20x: 94.3%

Validation Efficiency

98% (60/61)

MGI Phenotype

PHENOTYPE: Mice homozygous for a null allele exhibit no significant alterations in behavior, histopathology or clinical chemistry. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Apcdd1	A	G	18: 63,085,095 (GRCm39)	T431A	probably benign	Het
Bcan	T	A	3: 87,896,534 (GRCm39)	I721F	probably damaging	Het
Card10	T	C	15: 78,686,643 (GRCm39)	D58G	possibly damaging	Het
Cd200r2	A	G	16: 44,729,969 (GRCm39)	N171S	probably damaging	Het
Celsr1	T	C	15: 85,916,248 (GRCm39)	D575G	probably damaging	Het
Ces1f	A	G	8: 93,993,870 (GRCm39)		probably benign	Het
Cped1	A	T	6: 22,237,698 (GRCm39)	H938L	probably benign	Het
Creld1	A	G	6: 113,468,656 (GRCm39)	D259G	probably benign	Het
Cubn	T	C	2: 13,341,053 (GRCm39)	I2223V	possibly damaging	Het
Dop1a	A	G	9: 86,397,459 (GRCm39)	D921G	probably damaging	Het
Dusp7	T	C	9: 106,250,849 (GRCm39)	S325P	possibly damaging	Het
Fat4	A	T	3: 39,037,091 (GRCm39)	D3581V	possibly damaging	Het
Fhl3	T	C	4: 124,599,584 (GRCm39)		probably null	Het
Gap43	T	C	16: 42,112,167 (GRCm39)	E198G	probably benign	Het
Garin4	G	A	1: 190,896,682 (GRCm39)		probably benign	Het
Gsk3b	T	C	16: 38,028,346 (GRCm39)		probably benign	Het
Gtf3c3	C	T	1: 54,456,937 (GRCm39)	A488T	probably damaging	Het
Haus6	A	G	4: 86,503,563 (GRCm39)		probably null	Het
Hmcn1	C	T	1: 150,494,679 (GRCm39)	A4137T	possibly damaging	Het
Itih4	C	A	14: 30,618,124 (GRCm39)		probably benign	Het
Itprid1	T	C	6: 55,866,155 (GRCm39)	F183L	probably damaging	Het
Kif22	A	G	7: 126,631,916 (GRCm39)	S384P	probably benign	Het
Lbr	A	C	1: 181,648,233 (GRCm39)		probably benign	Het
Mei1	G	A	15: 82,000,068 (GRCm39)		probably benign	Het
Misp	T	C	10: 79,662,969 (GRCm39)	V462A	probably benign	Het
Mrgpra3	A	C	7: 47,239,039 (GRCm39)	L296V	possibly damaging	Het
Ndufa9	A	T	6: 126,799,031 (GRCm39)	L362Q	probably damaging	Het
Nlrp9c	A	T	7: 26,083,862 (GRCm39)	D572E	probably benign	Het
Or4f14	T	A	2: 111,743,222 (GRCm39)	T18S	probably benign	Het
Otud4	C	T	8: 80,379,980 (GRCm39)		probably benign	Het
P4ha3	T	C	7: 99,962,535 (GRCm39)	I431T	probably damaging	Het
Pcdhb15	T	A	18: 37,606,815 (GRCm39)	F16I	probably benign	Het
Pcnp	A	G	16: 55,844,754 (GRCm39)	S49P	probably damaging	Het
Pdxdc1	T	A	16: 13,697,278 (GRCm39)		probably benign	Het
Pgc	T	A	17: 48,039,828 (GRCm39)		probably null	Het
Phf11a	T	C	14: 59,521,778 (GRCm39)	D131G	probably benign	Het
Prdm2	G	A	4: 142,858,953 (GRCm39)	H1446Y	possibly damaging	Het
Rad54b	T	C	4: 11,563,352 (GRCm39)	S4P	probably damaging	Het
Slc52a2	T	C	15: 76,423,808 (GRCm39)		probably benign	Het
Slc9a4	G	A	1: 40,623,490 (GRCm39)		probably benign	Het
Smad4	T	C	18: 73,773,333 (GRCm39)	D551G	probably benign	Het
Smg7	A	T	1: 152,742,326 (GRCm39)		probably benign	Het
Sned1	G	A	1: 93,209,376 (GRCm39)	V830M	possibly damaging	Het
Sspo	A	G	6: 48,436,352 (GRCm39)	Y1234C	probably damaging	Het
Stab2	A	T	10: 86,721,582 (GRCm39)		probably null	Het
Stk36	A	G	1: 74,671,925 (GRCm39)	E875G	probably benign	Het
Stmn4	T	G	14: 66,591,844 (GRCm39)		probably benign	Het
Tagln3	C	A	16: 45,544,635 (GRCm39)	R12L	probably damaging	Het
Tex14	A	T	11: 87,413,343 (GRCm39)	R1031S	probably benign	Het
Tia1	G	A	6: 86,396,091 (GRCm39)	V96I	probably benign	Het
Ticrr	C	T	7: 79,343,701 (GRCm39)	P1189S	probably benign	Het
Tnxb	G	A	17: 34,904,017 (GRCm39)	V1053M	probably damaging	Het
Tpp2	T	C	1: 44,031,556 (GRCm39)		probably null	Het
Trpm7	A	G	2: 126,664,406 (GRCm39)	M991T	possibly damaging	Het
Ttc3	T	A	16: 94,217,127 (GRCm39)		probably benign	Het
Vcan	G	A	13: 89,853,782 (GRCm39)	P393S	probably damaging	Het
Vmn2r107	G	A	17: 20,576,860 (GRCm39)	R286Q	probably benign	Het
Wdr87-ps	G	A	7: 29,233,669 (GRCm39)		noncoding transcript	Het
Wrap73	A	T	4: 154,236,884 (GRCm39)		probably null	Het
Zfp958	A	T	8: 4,676,169 (GRCm39)	N46Y	possibly damaging	Het

Other mutations in Grina

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01656:Grina	APN	15	76,132,501 (GRCm39)	missense	probably damaging	1.00
IGL02975:Grina	APN	15	76,133,185 (GRCm39)	missense	probably damaging	1.00
IGL03135:Grina	APN	15	76,132,162 (GRCm39)	missense	possibly damaging	0.66
R0532:Grina	UTSW	15	76,133,045 (GRCm39)	missense	probably damaging	0.98
R1481:Grina	UTSW	15	76,133,289 (GRCm39)	missense	probably damaging	1.00
R2014:Grina	UTSW	15	76,132,734 (GRCm39)	missense	probably damaging	0.99
R2015:Grina	UTSW	15	76,132,734 (GRCm39)	missense	probably damaging	0.99
R4165:Grina	UTSW	15	76,133,529 (GRCm39)	missense	probably damaging	1.00
R4166:Grina	UTSW	15	76,133,529 (GRCm39)	missense	probably damaging	1.00
R4755:Grina	UTSW	15	76,133,442 (GRCm39)	missense	probably damaging	1.00
R6154:Grina	UTSW	15	76,133,087 (GRCm39)	missense	possibly damaging	0.91
R6191:Grina	UTSW	15	76,133,218 (GRCm39)	missense	probably damaging	1.00
R6283:Grina	UTSW	15	76,132,751 (GRCm39)	missense	possibly damaging	0.77
R7205:Grina	UTSW	15	76,133,287 (GRCm39)	missense	probably damaging	1.00
R8828:Grina	UTSW	15	76,132,497 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGGGACAAGAACATTCGCCAGG -3'
(R):5'- GCTATCATGCCCACCATGTAGGAC -3'

Sequencing Primer
(F):5'- CCTTTATCAGAAAGGTTGGGC -3'
(R):5'- ACCATGTAGGACAAGCTGAC -3'

Posted On

2014-01-05