Mutagenetix > Incidental Mutation

Incidental Mutation 'R1004:Cd163'

97950

Institutional Source

Beutler Lab

Gene Symbol

Cd163

Ensembl Gene

ENSMUSG00000008845

Gene Name

CD163 antigen

Synonyms

MMRRC Submission

039114-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1004 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

124304656-124330527 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 124325347 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Tyrosine at position 957 (D957Y)

Ref Sequence

ENSEMBL: ENSMUSP00000108160 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032234] [ENSMUST00000112541]

AlphaFold

Q2VLH6

Predicted Effect

probably damaging
Transcript: ENSMUST00000032234
AA Change: D957Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000032234
Gene: ENSMUSG00000008845
AA Change: D957Y

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
SR	50	150	1.1e-52	SMART
SR	157	258	1.4e-55	SMART
SR	265	365	7.3e-60	SMART
SR	372	472	1.2e-35	SMART
SR	477	577	2.3e-41	SMART
SR	582	682	9.8e-39	SMART
SR	719	819	1.1e-60	SMART
SR	824	927	4e-24	SMART
SR	930	1030	2.3e-55	SMART
transmembrane domain	1046	1068	N/A	INTRINSIC
low complexity region	1095	1107	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112541
AA Change: D957Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108160
Gene: ENSMUSG00000008845
AA Change: D957Y

Domain	Start	End	E-Value	Type
signal peptide	1	36	N/A	INTRINSIC
SR	50	150	2.26e-50	SMART
SR	157	258	3.11e-53	SMART
SR	265	365	1.54e-57	SMART
SR	372	472	2.64e-33	SMART
SR	477	577	5.03e-39	SMART
SR	582	682	2.09e-36	SMART
SR	719	819	2.38e-58	SMART
SR	824	927	8.93e-22	SMART
SR	930	1030	5.06e-53	SMART
transmembrane domain	1046	1068	N/A	INTRINSIC
low complexity region	1095	1107	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203210

Meta Mutation Damage Score

0.7386

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.2%
20x: 92.7%

Validation Efficiency

100% (41/41)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the scavenger receptor cysteine-rich (SRCR) superfamily, and is exclusively expressed in monocytes and macrophages. It functions as an acute phase-regulated receptor involved in the clearance and endocytosis of hemoglobin/haptoglobin complexes by macrophages, and may thereby protect tissues from free hemoglobin-mediated oxidative damage. This protein may also function as an innate immune sensor for bacteria and inducer of local inflammation. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: After hindlimb ischemia, mice homozygous for a knock-out allele exhibit increased muscle satellite cell proliferation, and enhanced skeletal muscle regeneration not limited to the site of injury. Knock-out mice also exhibit increased eosinophilic airway inflammation in house dust mite-challenged. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 39 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	A	G	11: 110,151,954	I423T	possibly damaging	Het
Agbl3	A	T	6: 34,803,451	E453V	probably damaging	Het
Agxt	A	G	1: 93,135,699	M108V	possibly damaging	Het
Akap13	T	C	7: 75,687,286	I831T	probably damaging	Het
Anpep	C	T	7: 79,838,256	E518K	probably benign	Het
Arid1a	A	G	4: 133,687,275	M1215T	unknown	Het
Ces2e	A	G	8: 104,929,738	D200G	probably damaging	Het
Cfap54	T	C	10: 93,066,696		probably benign	Het
Col11a1	A	G	3: 114,095,022		probably benign	Het
Dlx6	C	T	6: 6,863,665	Q96*	probably null	Het
Dpp4	T	A	2: 62,332,640	Q754L	probably benign	Het
Ece1	A	G	4: 137,926,239	T100A	probably benign	Het
Gabbr2	C	T	4: 46,677,544	V779M	possibly damaging	Het
Gatm	C	T	2: 122,609,660		probably benign	Het
Gm20767	T	A	13: 120,155,022	D132E	probably benign	Het
Gpc2	A	G	5: 138,278,225	L213P	probably damaging	Het
Hook1	A	C	4: 96,022,287	N713H	probably benign	Het
Kdm5b	T	A	1: 134,588,904	I178K	possibly damaging	Het
Mettl9	G	A	7: 121,076,237	V287I	probably benign	Het
Mroh2a	C	A	1: 88,242,420	A685D	possibly damaging	Het
Mycbp2	G	A	14: 103,140,917	T3774I	probably benign	Het
Nupl1	C	A	14: 60,247,481		probably benign	Het
Nxf1	A	T	19: 8,764,317	T119S	probably benign	Het
Oaz3	T	A	3: 94,435,043	H102L	probably damaging	Het
Olfr971	T	C	9: 39,839,980	F182S	probably benign	Het
Pfpl	A	T	19: 12,430,425	Q680L	probably benign	Het
Poli	T	A	18: 70,525,438	Q75L	probably benign	Het
Ppp2r3a	C	T	9: 101,198,630		probably null	Het
Prr30	A	G	14: 101,199,093	L11P	probably damaging	Het
Ptchd4	A	T	17: 42,377,602	Y345F	probably benign	Het
Ric1	A	G	19: 29,602,357	N1233S	probably benign	Het
Serpinb9f	TA	"TTTNA,T"	13: 33,334,242		probably benign	Het
Sh3bgrl2	C	T	9: 83,577,631		probably benign	Het
Skp1a	G	C	11: 52,237,380		probably benign	Het
Slc12a9	T	C	5: 137,322,524	K528R	probably damaging	Het
Slc22a6	A	G	19: 8,618,399	N35S	probably damaging	Het
Xrcc5	A	G	1: 72,383,778		probably benign	Het
Zfp235	T	A	7: 24,140,744	L266Q	probably damaging	Het
Zfp600	T	A	4: 146,196,533		probably benign	Het

Other mutations in Cd163

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00232:Cd163	APN	6	124329101	splice site	probably benign
IGL00755:Cd163	APN	6	124318657	missense	possibly damaging	0.70
IGL01690:Cd163	APN	6	124307318	missense	possibly damaging	0.89
IGL02101:Cd163	APN	6	124307287	nonsense	probably null
IGL02733:Cd163	APN	6	124325341	missense	probably damaging	1.00
IGL02801:Cd163	APN	6	124320529	missense	probably benign	0.00
IGL02897:Cd163	APN	6	124325527	missense	probably damaging	1.00
IGL03074:Cd163	APN	6	124317986	missense	probably benign	0.00
IGL03283:Cd163	APN	6	124309199	missense	possibly damaging	0.49
compass	UTSW	6	124329086	makesense	probably null
hottish	UTSW	6	124309208	missense	probably damaging	1.00
protractor	UTSW	6	124311566	missense	probably damaging	1.00
t-square	UTSW	6	124325288	missense	probably damaging	0.97
R0494:Cd163	UTSW	6	124311449	missense	probably damaging	1.00
R0554:Cd163	UTSW	6	124312660	missense	probably benign	0.03
R0622:Cd163	UTSW	6	124317352	missense	probably damaging	1.00
R1061:Cd163	UTSW	6	124309169	missense	probably benign	0.00
R1132:Cd163	UTSW	6	124309096	nonsense	probably null
R1195:Cd163	UTSW	6	124325250	splice site	probably benign
R1195:Cd163	UTSW	6	124325250	splice site	probably benign
R1436:Cd163	UTSW	6	124327931	missense	possibly damaging	0.47
R1463:Cd163	UTSW	6	124311447	missense	probably damaging	1.00
R1532:Cd163	UTSW	6	124312730	missense	possibly damaging	0.91
R1541:Cd163	UTSW	6	124327961	missense	probably benign
R1654:Cd163	UTSW	6	124317581	missense	probably damaging	1.00
R1717:Cd163	UTSW	6	124329588	utr 3 prime	probably benign
R1744:Cd163	UTSW	6	124307028	missense	possibly damaging	0.94
R2014:Cd163	UTSW	6	124325498	missense	probably damaging	0.99
R2035:Cd163	UTSW	6	124320629	missense	probably damaging	0.97
R2095:Cd163	UTSW	6	124317822	missense	probably damaging	1.00
R2124:Cd163	UTSW	6	124318856	missense	probably damaging	1.00
R2146:Cd163	UTSW	6	124309208	missense	probably damaging	1.00
R2353:Cd163	UTSW	6	124319156	nonsense	probably null
R3854:Cd163	UTSW	6	124311566	missense	probably damaging	1.00
R4425:Cd163	UTSW	6	124327903	missense	possibly damaging	0.94
R4631:Cd163	UTSW	6	124329086	makesense	probably null
R4647:Cd163	UTSW	6	124320621	missense	probably damaging	1.00
R4713:Cd163	UTSW	6	124317618	critical splice donor site	probably null
R4803:Cd163	UTSW	6	124312430	missense	probably damaging	0.99
R4996:Cd163	UTSW	6	124319147	missense	probably benign	0.00
R5022:Cd163	UTSW	6	124325288	missense	probably damaging	0.97
R5023:Cd163	UTSW	6	124325288	missense	probably damaging	0.97
R5032:Cd163	UTSW	6	124311669	missense	probably damaging	1.00
R5057:Cd163	UTSW	6	124325288	missense	probably damaging	0.97
R5121:Cd163	UTSW	6	124317989	missense	probably damaging	1.00
R5436:Cd163	UTSW	6	124327964	missense	probably benign
R5453:Cd163	UTSW	6	124312541	missense	probably damaging	1.00
R5723:Cd163	UTSW	6	124319063	missense	probably benign	0.00
R5929:Cd163	UTSW	6	124326609	critical splice donor site	probably null
R5943:Cd163	UTSW	6	124329602	makesense	probably null
R5964:Cd163	UTSW	6	124326572	missense	probably benign	0.01
R5966:Cd163	UTSW	6	124320636	nonsense	probably null
R6279:Cd163	UTSW	6	124317991	nonsense	probably null
R6300:Cd163	UTSW	6	124317991	nonsense	probably null
R6499:Cd163	UTSW	6	124304744	missense	probably benign	0.00
R6602:Cd163	UTSW	6	124311635	missense	probably damaging	1.00
R6708:Cd163	UTSW	6	124309208	missense	probably damaging	1.00
R6767:Cd163	UTSW	6	124304779	missense	possibly damaging	0.56
R6979:Cd163	UTSW	6	124317986	missense	probably benign	0.00
R6993:Cd163	UTSW	6	124317714	missense	probably damaging	1.00
R7345:Cd163	UTSW	6	124318938	missense	possibly damaging	0.52
R7382:Cd163	UTSW	6	124311312	splice site	probably null
R7552:Cd163	UTSW	6	124307228	missense	probably benign	0.08
R7829:Cd163	UTSW	6	124304779	missense	probably benign	0.04
R8354:Cd163	UTSW	6	124328965	missense	probably benign	0.43
R8454:Cd163	UTSW	6	124328965	missense	probably benign	0.43
R8530:Cd163	UTSW	6	124318901	missense	probably damaging	1.00
R8560:Cd163	UTSW	6	124317401	missense	possibly damaging	0.86
R8878:Cd163	UTSW	6	124320510	missense	probably damaging	0.99
R8930:Cd163	UTSW	6	124317923	missense	probably damaging	1.00
R8932:Cd163	UTSW	6	124317923	missense	probably damaging	1.00
R9074:Cd163	UTSW	6	124308988	nonsense	probably null
R9408:Cd163	UTSW	6	124320538	missense	probably benign	0.39
R9530:Cd163	UTSW	6	124317532	nonsense	probably null
R9558:Cd163	UTSW	6	124320512	missense	probably benign	0.01
R9608:Cd163	UTSW	6	124309204	missense	possibly damaging	0.79
R9685:Cd163	UTSW	6	124311425	missense	possibly damaging	0.77
Z1177:Cd163	UTSW	6	124317385	missense	probably benign	0.34

Predicted Primers

PCR Primer
(F):5'- GTTCCTCAGGAATAAGCCATATGCCTC -3'
(R):5'- CCCGCCTTTGCTACTAAAGAGTCC -3'

Sequencing Primer
(F):5'- GCCTCTGttgtttatttgtttgtttg -3'
(R):5'- TGACACTTACTTGGGAGGCAC -3'

Posted On

2014-01-05