Mutagenetix > Incidental Mutation

Incidental Mutation 'R1109:Vps35l'

98648

Institutional Source

Beutler Lab

Gene Symbol

Vps35l

Ensembl Gene

ENSMUSG00000030982

Gene Name

VPS35 endosomal protein sorting factor like

Synonyms

9030624J02Rik, Vsp35l

MMRRC Submission

039182-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.110) question?

Stock #

R1109 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

118339401-118440712 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 118374552 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 351 (I351F)

Ref Sequence

ENSEMBL: ENSMUSP00000051263 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033280] [ENSMUST00000059390] [ENSMUST00000106552] [ENSMUST00000106553]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000033280
AA Change: I88F

PolyPhen 2 Score 0.704 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

probably damaging
Transcript: ENSMUST00000059390
AA Change: I351F

PolyPhen 2 Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000051263
Gene: ENSMUSG00000030982
AA Change: I351F

Domain	Start	End	E-Value	Type
low complexity region	71	100	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106552
AA Change: I327F

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000102162
Gene: ENSMUSG00000030982
AA Change: I327F

Domain	Start	End	E-Value	Type
low complexity region	47	76	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106553
AA Change: I327F

PolyPhen 2 Score 0.472 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000102163
Gene: ENSMUSG00000030982
AA Change: I327F

Domain	Start	End	E-Value	Type
low complexity region	47	76	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129334

Meta Mutation Damage Score

0.1835

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.3%
20x: 88.9%

Validation Efficiency

100% (80/80)

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd3	T	G	3: 121,573,245 (GRCm39)	E262D	probably damaging	Het
Abcg1	G	A	17: 31,330,210 (GRCm39)	A504T	probably benign	Het
Acot11	T	C	4: 106,606,545 (GRCm39)	T515A	probably benign	Het
Alg8	A	T	7: 97,032,891 (GRCm39)		probably null	Het
Arhgap44	T	A	11: 64,917,642 (GRCm39)	H375L	probably benign	Het
Aspm	A	T	1: 139,384,496 (GRCm39)	I98F	probably damaging	Het
Atp8b5	T	C	4: 43,305,719 (GRCm39)		probably benign	Het
Coa3	T	C	11: 101,169,611 (GRCm39)	K48R	probably damaging	Het
Col12a1	A	G	9: 79,607,005 (GRCm39)	S473P	probably damaging	Het
Dnmt1	A	T	9: 20,833,684 (GRCm39)	Y451N	probably damaging	Het
Dock5	A	G	14: 68,043,927 (GRCm39)	Y819H	possibly damaging	Het
Dtx1	G	A	5: 120,848,484 (GRCm39)		probably benign	Het
Dus2	T	A	8: 106,780,114 (GRCm39)	F479I	probably benign	Het
Elp1	T	C	4: 56,786,723 (GRCm39)	T407A	probably benign	Het
Esrp1	T	C	4: 11,365,205 (GRCm39)	E262G	probably damaging	Het
Exoc4	A	G	6: 33,418,951 (GRCm39)	Y466C	probably damaging	Het
Fasn	A	G	11: 120,703,150 (GRCm39)	F1625S	possibly damaging	Het
Fbxw25	A	T	9: 109,479,128 (GRCm39)	H374Q	probably benign	Het
Focad	T	C	4: 88,114,984 (GRCm39)		probably benign	Het
Gad2	G	T	2: 22,571,406 (GRCm39)	R448L	probably damaging	Het
Gad2	G	A	2: 22,580,171 (GRCm39)		probably benign	Het
Galnt16	G	T	12: 80,637,405 (GRCm39)	E377D	probably benign	Het
Gcc1	A	C	6: 28,419,166 (GRCm39)	L389R	probably damaging	Het
Ggct	A	T	6: 54,966,554 (GRCm39)		probably benign	Het
Gm7052	G	A	17: 22,259,133 (GRCm39)		probably benign	Het
Gps2	T	A	11: 69,806,507 (GRCm39)	H177Q	possibly damaging	Het
Heg1	T	A	16: 33,583,961 (GRCm39)	L1256Q	probably damaging	Het
Il36a	G	A	2: 24,106,602 (GRCm39)	G62E	probably damaging	Het
Il3ra	C	T	14: 14,349,317 (GRCm38)	R138W	probably damaging	Het
Itprid1	G	T	6: 55,945,245 (GRCm39)	K655N	probably damaging	Het
Kdm4b	T	A	17: 56,706,430 (GRCm39)	I848N	probably damaging	Het
L3hypdh	A	G	12: 72,120,770 (GRCm39)	V327A	possibly damaging	Het
Lepr	G	T	4: 101,628,552 (GRCm39)	L552F	probably damaging	Het
Lpin3	T	C	2: 160,740,941 (GRCm39)	I449T	probably damaging	Het
Lrrn1	A	G	6: 107,544,225 (GRCm39)	K8E	probably benign	Het
Mex3a	G	T	3: 88,443,967 (GRCm39)	D348Y	possibly damaging	Het
Mindy2	G	A	9: 70,538,361 (GRCm39)	R325*	probably null	Het
Mkrn1	A	T	6: 39,376,268 (GRCm39)	M382K	probably damaging	Het
Mroh1	G	T	15: 76,330,709 (GRCm39)		probably benign	Het
Myo15a	T	A	11: 60,383,892 (GRCm39)	D1646E	probably damaging	Het
Neu2	A	G	1: 87,524,450 (GRCm39)	D145G	probably damaging	Het
Obi1	A	T	14: 104,717,200 (GRCm39)	L391*	probably null	Het
Or10ah1-ps1	A	T	5: 143,123,374 (GRCm39)	N216K	probably benign	Het
Or11g27	T	C	14: 50,771,159 (GRCm39)	S97P	possibly damaging	Het
Or2w3b	T	C	11: 58,623,742 (GRCm39)	Y83C	probably benign	Het
Plekhm2	T	A	4: 141,355,295 (GRCm39)	I938F	probably benign	Het
Pnma8a	A	T	7: 16,695,392 (GRCm39)	K416*	probably null	Het
Ppid	T	C	3: 79,506,168 (GRCm39)	S198P	probably benign	Het
Rabl6	G	T	2: 25,477,538 (GRCm39)	P304Q	probably damaging	Het
Rasal2	A	T	1: 157,005,208 (GRCm39)		probably benign	Het
Ripor1	G	T	8: 106,345,560 (GRCm39)		probably benign	Het
Rnf216	A	T	5: 143,054,124 (GRCm39)	L658Q	probably damaging	Het
Safb	T	A	17: 56,908,228 (GRCm39)		probably benign	Het
Sf3b5	T	C	10: 12,884,497 (GRCm39)	M44T	probably benign	Het
Slc26a9	A	T	1: 131,686,536 (GRCm39)	M419L	probably benign	Het
Slc38a8	T	C	8: 120,209,394 (GRCm39)	D393G	probably benign	Het
Slc6a3	A	G	13: 73,705,199 (GRCm39)	D230G	probably benign	Het
Smc1b	T	C	15: 84,997,016 (GRCm39)	T535A	probably damaging	Het
Smg7	G	C	1: 152,721,334 (GRCm39)	P626R	probably damaging	Het
Smu1	C	T	4: 40,755,722 (GRCm39)	V48M	probably benign	Het
Spag17	T	C	3: 99,934,667 (GRCm39)	Y650H	possibly damaging	Het
Spata1	C	T	3: 146,181,053 (GRCm39)	V302I	possibly damaging	Het
Sptb	G	A	12: 76,650,377 (GRCm39)	A1780V	probably damaging	Het
Srrm2	G	A	17: 24,038,591 (GRCm39)		probably benign	Het
Sspo	A	C	6: 48,474,377 (GRCm39)	N4933H	probably damaging	Het
Sult2a2	T	C	7: 13,468,798 (GRCm39)	I88T	probably benign	Het
Tgfa	G	T	6: 86,247,072 (GRCm39)		probably benign	Het
Thsd1	T	A	8: 22,733,708 (GRCm39)	C252S	possibly damaging	Het
Tmem102	T	A	11: 69,695,630 (GRCm39)	H114L	probably damaging	Het
Tnni3k	T	A	3: 154,498,414 (GRCm39)	K808N	possibly damaging	Het
Trpm7	G	T	2: 126,639,713 (GRCm39)	L1628M	probably benign	Het
Ttn	A	G	2: 76,561,081 (GRCm39)	Y29107H	probably damaging	Het
Upb1	T	C	10: 75,273,999 (GRCm39)	L342P	probably damaging	Het
Vmn2r120	T	C	17: 57,832,829 (GRCm39)	T117A	probably benign	Het
Vmn2r16	A	G	5: 109,487,652 (GRCm39)	D175G	probably damaging	Het
Zfhx4	T	G	3: 5,464,930 (GRCm39)	M1696R	possibly damaging	Het
Zfp746	A	G	6: 48,041,856 (GRCm39)	V289A	possibly damaging	Het
Zfyve26	A	C	12: 79,318,901 (GRCm39)	F1146V	probably damaging	Het

Other mutations in Vps35l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00159:Vps35l	APN	7	118,396,270 (GRCm39)	critical splice donor site	probably null
IGL00229:Vps35l	APN	7	118,403,414 (GRCm39)	splice site	probably benign
IGL01066:Vps35l	APN	7	118,372,234 (GRCm39)	splice site	probably null
IGL01433:Vps35l	APN	7	118,373,274 (GRCm39)	splice site	probably null
IGL02381:Vps35l	APN	7	118,374,598 (GRCm39)	missense	probably damaging	1.00
IGL02566:Vps35l	APN	7	118,352,055 (GRCm39)	missense	probably benign	0.04
IGL03199:Vps35l	APN	7	118,365,611 (GRCm39)	missense	probably benign	0.18
IGL03224:Vps35l	APN	7	118,391,776 (GRCm39)	unclassified	probably benign
R0535:Vps35l	UTSW	7	118,347,404 (GRCm39)	missense	possibly damaging	0.95
R1378:Vps35l	UTSW	7	118,393,796 (GRCm39)	missense	probably damaging	1.00
R1378:Vps35l	UTSW	7	118,393,795 (GRCm39)	nonsense	probably null
R1412:Vps35l	UTSW	7	118,409,194 (GRCm39)	missense	probably damaging	0.99
R1474:Vps35l	UTSW	7	118,359,436 (GRCm39)	missense	probably damaging	1.00
R1586:Vps35l	UTSW	7	118,409,195 (GRCm39)	missense	probably damaging	1.00
R1785:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R1786:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R1921:Vps35l	UTSW	7	118,432,971 (GRCm39)	missense	probably damaging	0.98
R1971:Vps35l	UTSW	7	118,374,557 (GRCm39)	missense	probably damaging	1.00
R2038:Vps35l	UTSW	7	118,411,097 (GRCm39)	missense	probably damaging	0.98
R2107:Vps35l	UTSW	7	118,393,762 (GRCm39)	unclassified	probably benign
R2130:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R2131:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R2132:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R2133:Vps35l	UTSW	7	118,393,798 (GRCm39)	missense	probably damaging	1.00
R2405:Vps35l	UTSW	7	118,391,818 (GRCm39)	missense	probably damaging	1.00
R2411:Vps35l	UTSW	7	118,391,818 (GRCm39)	missense	probably damaging	1.00
R3910:Vps35l	UTSW	7	118,345,613 (GRCm39)	missense	possibly damaging	0.86
R3911:Vps35l	UTSW	7	118,345,613 (GRCm39)	missense	possibly damaging	0.86
R3912:Vps35l	UTSW	7	118,345,613 (GRCm39)	missense	possibly damaging	0.86
R3971:Vps35l	UTSW	7	118,433,022 (GRCm39)	missense	probably damaging	0.98
R4697:Vps35l	UTSW	7	118,390,671 (GRCm39)	missense	probably damaging	1.00
R4964:Vps35l	UTSW	7	118,379,491 (GRCm39)	missense	possibly damaging	0.84
R4980:Vps35l	UTSW	7	118,406,232 (GRCm39)	missense	probably damaging	1.00
R5034:Vps35l	UTSW	7	118,390,611 (GRCm39)	missense	probably damaging	0.99
R5309:Vps35l	UTSW	7	118,412,799 (GRCm39)	missense	probably damaging	1.00
R5312:Vps35l	UTSW	7	118,412,799 (GRCm39)	missense	probably damaging	1.00
R5743:Vps35l	UTSW	7	118,396,234 (GRCm39)	missense	possibly damaging	0.89
R6017:Vps35l	UTSW	7	118,409,144 (GRCm39)	missense	probably damaging	1.00
R6089:Vps35l	UTSW	7	118,345,658 (GRCm39)	missense	possibly damaging	0.76
R6320:Vps35l	UTSW	7	118,353,072 (GRCm39)	missense	probably benign	0.08
R6415:Vps35l	UTSW	7	118,391,869 (GRCm39)	missense	probably damaging	1.00
R6861:Vps35l	UTSW	7	118,342,898 (GRCm39)	missense	probably damaging	1.00
R7034:Vps35l	UTSW	7	118,372,315 (GRCm39)	missense	probably damaging	1.00
R7036:Vps35l	UTSW	7	118,372,315 (GRCm39)	missense	probably damaging	1.00
R7339:Vps35l	UTSW	7	118,409,194 (GRCm39)	missense	probably damaging	0.99
R7456:Vps35l	UTSW	7	118,403,340 (GRCm39)	missense	probably benign	0.01
R7493:Vps35l	UTSW	7	118,393,800 (GRCm39)	splice site	probably null
R8064:Vps35l	UTSW	7	118,353,147 (GRCm39)	missense	probably damaging	1.00
R8103:Vps35l	UTSW	7	118,342,855 (GRCm39)	missense	probably benign	0.19
R8279:Vps35l	UTSW	7	118,345,722 (GRCm39)	missense	probably benign
R8354:Vps35l	UTSW	7	118,391,795 (GRCm39)	missense	probably benign	0.07
R8454:Vps35l	UTSW	7	118,391,795 (GRCm39)	missense	probably benign	0.07
R8954:Vps35l	UTSW	7	118,393,801 (GRCm39)	missense	possibly damaging	0.94
R9450:Vps35l	UTSW	7	118,352,118 (GRCm39)	critical splice donor site	probably null
R9642:Vps35l	UTSW	7	118,437,451 (GRCm39)	missense	probably benign	0.00
R9667:Vps35l	UTSW	7	118,348,915 (GRCm39)	critical splice donor site	probably null
R9749:Vps35l	UTSW	7	118,352,107 (GRCm39)	missense	probably benign	0.03
X0028:Vps35l	UTSW	7	118,399,675 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- CACTGCCTTGGCAAGCTGAAAC -3'
(R):5'- GGTAACGACGACCTTAAACGTCCC -3'

Sequencing Primer
(F):5'- TGGCAAGCTGAAACTTTGACC -3'
(R):5'- AGAACTGTGGTAAGTTGGTCTACTTC -3'

Posted On

2014-01-05