Mutagenetix > Incidental Mutation

Incidental Mutation 'R4924:Brap'

378852

Institutional Source

Beutler Lab

Gene Symbol

Brap

Ensembl Gene

ENSMUSG00000029458

Gene Name

BRCA1 associated protein

Synonyms

3010002G07Rik

MMRRC Submission

042526-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4924 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

121798626-121825312 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 121803318 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 155 (N155K)

Ref Sequence

ENSEMBL: ENSMUSP00000143043 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031412] [ENSMUST00000031414] [ENSMUST00000111765] [ENSMUST00000111770] [ENSMUST00000142701] [ENSMUST00000140996] [ENSMUST00000195952]

AlphaFold

Q99MP8

Predicted Effect

probably benign
Transcript: ENSMUST00000031412

SMART Domains

Protein: ENSMUSP00000031412
Gene: ENSMUSG00000029456

Domain	Start	End	E-Value	Type
Pfam:HAD_2	45	231	1.6e-14	PFAM
Pfam:Hydrolase	88	225	5e-8	PFAM
Pfam:APH	287	531	1.8e-52	PFAM
Pfam:Acyl-CoA_dh_N	660	787	1.7e-15	PFAM
Pfam:Acyl-CoA_dh_M	791	892	2.7e-20	PFAM
Pfam:Acyl-CoA_dh_1	904	1055	1.1e-35	PFAM
Pfam:Acyl-CoA_dh_2	919	1037	6.4e-13	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000031414
AA Change: N199K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000031414
Gene: ENSMUSG00000029458
AA Change: N199K

Domain	Start	End	E-Value	Type
Pfam:BRAP2	153	251	3.7e-38	PFAM
RING	263	302	7.92e-8	SMART
ZnF_UBP	315	364	1.68e-25	SMART
coiled coil region	430	535	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000111765
AA Change: N169K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000107395
Gene: ENSMUSG00000029458
AA Change: N169K

Domain	Start	End	E-Value	Type
Pfam:BRAP2	117	226	3.5e-41	PFAM
RING	233	272	3.7e-10	SMART
ZnF_UBP	285	334	1.1e-27	SMART
coiled coil region	400	505	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111770

SMART Domains

Protein: ENSMUSP00000107400
Gene: ENSMUSG00000029456

Domain	Start	End	E-Value	Type
Pfam:HAD_2	45	231	2.3e-14	PFAM
Pfam:APH	287	523	3.2e-50	PFAM
Pfam:EcKinase	390	504	5.2e-8	PFAM
Pfam:Acyl-CoA_dh_N	660	787	3.4e-14	PFAM
Pfam:Acyl-CoA_dh_M	791	845	2.7e-13	PFAM
Pfam:Acyl-CoA_dh_1	904	1055	9.4e-36	PFAM
Pfam:Acyl-CoA_dh_2	919	1037	1.6e-14	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127703

SMART Domains

Protein: ENSMUSP00000118574
Gene: ENSMUSG00000029458

Domain	Start	End	E-Value	Type
Pfam:BRAP2	1	39	6.3e-13	PFAM
RING	46	85	7.92e-8	SMART
ZnF_UBP	98	147	1.68e-25	SMART
coiled coil region	213	318	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132491

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133775

Predicted Effect

probably damaging
Transcript: ENSMUST00000142701
AA Change: N155K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000143043
Gene: ENSMUSG00000029458
AA Change: N155K

Domain	Start	End	E-Value	Type
Pfam:BRAP2	103	175	3.8e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148052

Predicted Effect

probably benign
Transcript: ENSMUST00000140996

Predicted Effect

probably benign
Transcript: ENSMUST00000195952

Coding Region Coverage

1x: 99.0%
3x: 98.2%
10x: 96.0%
20x: 91.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was identified by its ability to bind to the nuclear localization signal of BRCA1 and other proteins. It is a cytoplasmic protein which may regulate nuclear targeting by retaining proteins with a nuclear localization signal in the cytoplasm. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit embryonic lethality during organogenesis and subtle defects in cell cycle-dependent nuclear movement in neural progenitors. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	G	A	11: 119,902,351 (GRCm39)	H625Y	probably damaging	Het
Adamts4	C	T	1: 171,086,643 (GRCm39)	R812W	probably damaging	Het
Ajuba	A	C	14: 54,809,056 (GRCm39)		probably null	Het
Aox1	T	A	1: 58,344,503 (GRCm39)	V532D	probably damaging	Het
Arpc1b	G	A	5: 145,063,625 (GRCm39)	S295N	probably benign	Het
Baiap2	A	G	11: 119,887,850 (GRCm39)	S335G	probably damaging	Het
Btn1a1	A	G	13: 23,648,396 (GRCm39)		probably benign	Het
Ccl12	G	A	11: 81,993,475 (GRCm39)	V38I	probably benign	Het
Cemip	T	C	7: 83,602,146 (GRCm39)	Y881C	probably damaging	Het
Cep128	T	C	12: 90,989,174 (GRCm39)		silent	Het
Chd5	A	C	4: 152,450,886 (GRCm39)	D670A	possibly damaging	Het
Cmip	T	C	8: 117,983,994 (GRCm39)	Y52H	probably benign	Het
Dmtn	A	G	14: 70,855,399 (GRCm39)	I30T	probably benign	Het
Dscaml1	T	A	9: 45,656,487 (GRCm39)	M1609K	probably damaging	Het
Edar	C	A	10: 58,465,197 (GRCm39)	E55D	probably damaging	Het
Ehmt1	A	T	2: 24,729,734 (GRCm39)	I601N	probably damaging	Het
Fam120a	A	T	13: 49,055,572 (GRCm39)	N705K	probably benign	Het
Gm21718	G	T	14: 51,550,292 (GRCm39)		noncoding transcript	Het
Gnaz	A	G	10: 74,827,545 (GRCm39)	D99G	probably benign	Het
Helz	G	A	11: 107,493,165 (GRCm39)	G196D	probably damaging	Het
Hif1a	T	C	12: 73,986,331 (GRCm39)	S341P	probably damaging	Het
Hivep1	G	T	13: 42,311,792 (GRCm39)	S1344I	probably benign	Het
Hspa1l	T	A	17: 35,196,832 (GRCm39)	Y290*	probably null	Het
Ift81	A	G	5: 122,732,679 (GRCm39)	L285S	possibly damaging	Het
Inpp4b	T	A	8: 82,849,253 (GRCm39)	N891K	probably damaging	Het
Irx6	C	T	8: 93,404,981 (GRCm39)	T283M	probably benign	Het
Kdm5b	A	G	1: 134,559,089 (GRCm39)	K1538E	probably benign	Het
Kif13a	A	G	13: 47,083,075 (GRCm39)	V8A	probably damaging	Het
Krtap15-1	T	A	16: 88,626,036 (GRCm39)	N34K	probably damaging	Het
Lama2	T	G	10: 27,245,137 (GRCm39)	I215L	probably damaging	Het
Ldlrad3	C	T	2: 101,900,328 (GRCm39)	R58H	possibly damaging	Het
Lvrn	C	T	18: 47,027,792 (GRCm39)	P869L	probably damaging	Het
Myo1d	A	G	11: 80,565,504 (GRCm39)	F411S	probably damaging	Het
Myo5b	T	A	18: 74,828,455 (GRCm39)	H702Q	probably benign	Het
Nat8f4	G	T	6: 85,878,401 (GRCm39)	Q41K	probably benign	Het
Nckap5	C	A	1: 125,954,765 (GRCm39)	E596*	probably null	Het
Nek10	T	A	14: 14,846,594 (GRCm38)		probably null	Het
Notch3	T	C	17: 32,363,705 (GRCm39)	Y1145C	probably damaging	Het
Nr4a2	A	T	2: 57,002,035 (GRCm39)	H76Q	probably benign	Het
Nup98	T	C	7: 101,784,185 (GRCm39)	Q1049R	probably damaging	Het
Or4k48	A	T	2: 111,476,121 (GRCm39)	S74T	possibly damaging	Het
Or5k1b	T	A	16: 58,580,982 (GRCm39)	R186*	probably null	Het
Or8k33	A	T	2: 86,383,853 (GRCm39)	F205Y	probably damaging	Het
Pepd	T	C	7: 34,720,409 (GRCm39)	Y231H	probably benign	Het
Plagl1	G	T	10: 13,003,301 (GRCm39)	A190S	possibly damaging	Het
Plat	T	A	8: 23,268,269 (GRCm39)	I345N	probably damaging	Het
Pnmt	A	G	11: 98,278,286 (GRCm39)	E120G	probably damaging	Het
Prkrip1	C	A	5: 136,227,797 (GRCm39)		probably null	Het
Pygm	G	A	19: 6,443,754 (GRCm39)	A572T	probably damaging	Het
Rbm4b	T	C	19: 4,807,400 (GRCm39)	F39L	probably damaging	Het
Rpe65	A	G	3: 159,328,268 (GRCm39)	H388R	probably benign	Het
Scn4a	G	T	11: 106,210,914 (GRCm39)	A1701E	possibly damaging	Het
Sdk2	C	A	11: 113,748,584 (GRCm39)	W616L	probably damaging	Het
Serpina3m	T	A	12: 104,357,729 (GRCm39)	S218T	probably benign	Het
Siglece	C	T	7: 43,309,297 (GRCm39)	R87H	probably damaging	Het
Sim1	C	A	10: 50,785,998 (GRCm39)	L284M	probably damaging	Het
Smok3c	G	T	5: 138,063,844 (GRCm39)	E444*	probably null	Het
Snx4	T	C	16: 33,115,100 (GRCm39)	V427A	probably benign	Het
Srp68	A	T	11: 116,151,684 (GRCm39)	V304E	probably damaging	Het
Stag1	A	T	9: 100,678,808 (GRCm39)	H243L	possibly damaging	Het
Stx6	T	C	1: 155,049,737 (GRCm39)	V14A	probably damaging	Het
Sv2b	T	A	7: 74,786,169 (GRCm39)	Y417F	probably benign	Het
Tas2r103	A	G	6: 133,013,161 (GRCm39)	Y302H	probably benign	Het
Thop1	T	C	10: 80,916,028 (GRCm39)	S404P	probably benign	Het
Trp53bp1	G	T	2: 121,051,701 (GRCm39)	C988*	probably null	Het
Tsbp1	C	T	17: 34,678,951 (GRCm39)	P221L	probably damaging	Het
Ube3c	A	G	5: 29,836,269 (GRCm39)	E630G	possibly damaging	Het
Usf3	T	C	16: 44,037,718 (GRCm39)	S733P	probably benign	Het
Vmn1r195	A	G	13: 22,463,189 (GRCm39)	T220A	probably benign	Het
Vmn1r201	A	T	13: 22,658,882 (GRCm39)	H32L	probably benign	Het
Wnt2	A	G	6: 18,023,239 (GRCm39)	C137R	probably damaging	Het
Ythdc2	T	C	18: 44,980,871 (GRCm39)	S489P	probably damaging	Het
Zfp248	A	G	6: 118,406,033 (GRCm39)	C418R	probably damaging	Het
Zfp946	T	G	17: 22,674,502 (GRCm39)	F419V	probably damaging	Het
Zfp994	C	T	17: 22,419,738 (GRCm39)	E404K	probably damaging	Het
Zfpm1	T	C	8: 123,061,347 (GRCm39)	V304A	possibly damaging	Het

Other mutations in Brap

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00823:Brap	APN	5	121,803,290 (GRCm39)	missense	probably damaging	1.00
IGL01672:Brap	APN	5	121,816,908 (GRCm39)	unclassified	probably benign
IGL01889:Brap	APN	5	121,798,881 (GRCm39)	missense	probably benign	0.00
IGL01977:Brap	APN	5	121,816,910 (GRCm39)	unclassified	probably benign
IGL01978:Brap	APN	5	121,816,910 (GRCm39)	unclassified	probably benign
IGL01996:Brap	APN	5	121,816,910 (GRCm39)	unclassified	probably benign
IGL02499:Brap	APN	5	121,817,934 (GRCm39)	missense	probably damaging	0.99
IGL03137:Brap	APN	5	121,803,156 (GRCm39)	splice site	probably benign
R1185:Brap	UTSW	5	121,813,342 (GRCm39)	missense	probably damaging	1.00
R1185:Brap	UTSW	5	121,813,342 (GRCm39)	missense	probably damaging	1.00
R1185:Brap	UTSW	5	121,813,342 (GRCm39)	missense	probably damaging	1.00
R1624:Brap	UTSW	5	121,820,922 (GRCm39)	missense	possibly damaging	0.65
R1709:Brap	UTSW	5	121,803,353 (GRCm39)	critical splice donor site	probably null
R2056:Brap	UTSW	5	121,801,529 (GRCm39)	missense	probably damaging	1.00
R2109:Brap	UTSW	5	121,801,422 (GRCm39)	missense	possibly damaging	0.63
R3196:Brap	UTSW	5	121,803,259 (GRCm39)	missense	possibly damaging	0.70
R4591:Brap	UTSW	5	121,800,113 (GRCm39)	missense	probably null	1.00
R4744:Brap	UTSW	5	121,800,193 (GRCm39)	missense	probably damaging	1.00
R5000:Brap	UTSW	5	121,800,089 (GRCm39)	nonsense	probably null
R5702:Brap	UTSW	5	121,803,206 (GRCm39)	missense	probably damaging	1.00
R5893:Brap	UTSW	5	121,817,405 (GRCm39)	nonsense	probably null
R6244:Brap	UTSW	5	121,803,372 (GRCm39)	missense	probably benign	0.02
R6266:Brap	UTSW	5	121,823,328 (GRCm39)	missense	probably benign	0.00
R6726:Brap	UTSW	5	121,813,365 (GRCm39)	missense	probably damaging	1.00
R7765:Brap	UTSW	5	121,800,192 (GRCm39)	missense	probably damaging	1.00
R7995:Brap	UTSW	5	121,820,909 (GRCm39)	missense	probably benign
R8385:Brap	UTSW	5	121,823,197 (GRCm39)	missense	probably benign	0.05
R8465:Brap	UTSW	5	121,817,358 (GRCm39)	nonsense	probably null
R8809:Brap	UTSW	5	121,822,524 (GRCm39)	missense	possibly damaging	0.78
R8827:Brap	UTSW	5	121,810,261 (GRCm39)	missense	probably benign	0.00
R9191:Brap	UTSW	5	121,823,350 (GRCm39)	missense	probably benign	0.01
R9631:Brap	UTSW	5	121,822,435 (GRCm39)	missense	probably benign	0.16
R9705:Brap	UTSW	5	121,801,373 (GRCm39)	missense	probably benign
X0003:Brap	UTSW	5	121,817,319 (GRCm39)	missense	probably damaging	1.00
Z1176:Brap	UTSW	5	121,813,440 (GRCm39)	missense	possibly damaging	0.78

Predicted Primers

PCR Primer
(F):5'- AGACAAAAGAGTCATTTGGTTGTTG -3'
(R):5'- AATTGTATTTCTAATAGCCTTGGGG -3'

Sequencing Primer
(F):5'- CAGACTTTTCAAGACGGTCTCATTG -3'
(R):5'- TTGGGGCTACAACCTCGC -3'

Posted On

2016-04-15