Mutagenetix > Incidental Mutation

Incidental Mutation 'R5913:Plekhg2'

461119

Institutional Source

Beutler Lab

Gene Symbol

Plekhg2

Ensembl Gene

ENSMUSG00000037552

Gene Name

pleckstrin homology domain containing, family G (with RhoGef domain) member 2

Synonyms

Clg

MMRRC Submission

044110-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.324) question?

Stock #

R5913 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28059029-28072024 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 28064027 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 473 (R473L)

Ref Sequence

ENSEMBL: ENSMUSP00000113449 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094644] [ENSMUST00000119990] [ENSMUST00000121085] [ENSMUST00000144700] [ENSMUST00000147362]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000094644
AA Change: R474L

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000092228
Gene: ENSMUSG00000037552
AA Change: R474L

Domain	Start	End	E-Value	Type
low complexity region	34	45	N/A	INTRINSIC
low complexity region	46	63	N/A	INTRINSIC
low complexity region	73	88	N/A	INTRINSIC
RhoGEF	103	279	3.98e-49	SMART
PH	305	410	3.01e-8	SMART
low complexity region	463	481	N/A	INTRINSIC
low complexity region	582	605	N/A	INTRINSIC
low complexity region	842	856	N/A	INTRINSIC
low complexity region	1232	1246	N/A	INTRINSIC
low complexity region	1268	1292	N/A	INTRINSIC
low complexity region	1320	1334	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000119990
AA Change: R473L

PolyPhen 2 Score 0.873 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000112881
Gene: ENSMUSG00000037552
AA Change: R473L

Domain	Start	End	E-Value	Type
low complexity region	45	62	N/A	INTRINSIC
low complexity region	72	87	N/A	INTRINSIC
RhoGEF	102	278	3.98e-49	SMART
PH	304	409	3.01e-8	SMART
low complexity region	462	480	N/A	INTRINSIC
low complexity region	581	604	N/A	INTRINSIC
low complexity region	841	855	N/A	INTRINSIC
low complexity region	1231	1245	N/A	INTRINSIC
low complexity region	1267	1291	N/A	INTRINSIC
low complexity region	1319	1333	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000121085
AA Change: R473L

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000113449
Gene: ENSMUSG00000037552
AA Change: R473L

Domain	Start	End	E-Value	Type
low complexity region	45	62	N/A	INTRINSIC
low complexity region	72	87	N/A	INTRINSIC
RhoGEF	102	278	3.98e-49	SMART
PH	304	409	3.01e-8	SMART
low complexity region	462	479	N/A	INTRINSIC
low complexity region	606	629	N/A	INTRINSIC
low complexity region	866	880	N/A	INTRINSIC
low complexity region	1256	1270	N/A	INTRINSIC
low complexity region	1292	1316	N/A	INTRINSIC
low complexity region	1344	1358	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128015

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129145

Predicted Effect

possibly damaging
Transcript: ENSMUST00000144700
AA Change: R473L

PolyPhen 2 Score 0.873 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000115651
Gene: ENSMUSG00000037552
AA Change: R473L

Domain	Start	End	E-Value	Type
low complexity region	45	62	N/A	INTRINSIC
low complexity region	72	87	N/A	INTRINSIC
RhoGEF	102	278	3.98e-49	SMART
PH	304	409	3.01e-8	SMART
low complexity region	462	480	N/A	INTRINSIC
low complexity region	581	604	N/A	INTRINSIC
low complexity region	841	855	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000147362

SMART Domains

Protein: ENSMUSP00000118217
Gene: ENSMUSG00000037552

Domain	Start	End	E-Value	Type
low complexity region	34	45	N/A	INTRINSIC
low complexity region	46	63	N/A	INTRINSIC
low complexity region	73	88	N/A	INTRINSIC
Pfam:RhoGEF	103	205	3.1e-25	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147767

Meta Mutation Damage Score

0.0980

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.3%

Validation Efficiency

97% (75/77)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Als2cl	A	T	9: 110,718,773 (GRCm39)		probably null	Het
Arhgef19	A	T	4: 140,976,609 (GRCm39)	H457L	probably benign	Het
Armc3	A	G	2: 19,314,858 (GRCm39)	Y856C	possibly damaging	Het
Bdp1	A	T	13: 100,187,612 (GRCm39)	V1585D	probably benign	Het
Bhlhe40	T	G	6: 108,642,154 (GRCm39)	M366R	possibly damaging	Het
Bora	C	T	14: 99,305,948 (GRCm39)	S439L	probably benign	Het
Cacnb4	G	A	2: 52,324,796 (GRCm39)		probably benign	Het
Carm1	T	C	9: 21,498,848 (GRCm39)	S529P	probably benign	Het
Cd200r1	A	G	16: 44,610,034 (GRCm39)	I84M	possibly damaging	Het
Cd209a	A	G	8: 3,798,742 (GRCm39)	S22P	probably benign	Het
Celf2	A	T	2: 7,085,969 (GRCm39)	M1K	probably null	Het
Cep112	A	G	11: 108,648,514 (GRCm39)	T783A	probably damaging	Het
Cep95	T	C	11: 106,709,335 (GRCm39)		probably benign	Het
Clip4	G	A	17: 72,131,760 (GRCm39)	R366K	probably benign	Het
Csmd2	A	G	4: 128,445,781 (GRCm39)	K3284E	probably benign	Het
Csn3	T	A	5: 88,075,470 (GRCm39)	L12Q	probably damaging	Het
Ctdnep1	T	C	11: 69,879,691 (GRCm39)	L39P	probably damaging	Het
Cxcl17	C	T	7: 25,101,671 (GRCm39)	W55*	probably null	Het
Cyp2u1	G	A	3: 131,096,860 (GRCm39)		probably benign	Het
Dmgdh	A	T	13: 93,888,831 (GRCm39)	E823V	possibly damaging	Het
Dnah2	T	C	11: 69,339,256 (GRCm39)	I3078V	probably damaging	Het
Dpp10	A	C	1: 123,312,018 (GRCm39)	Y446D	probably damaging	Het
Eif2s3y	T	C	Y: 1,017,365 (GRCm39)	V290A	probably benign	Homo
Fktn	G	A	4: 53,735,035 (GRCm39)	W224*	probably null	Het
Gm37240	T	C	3: 84,874,905 (GRCm39)		probably benign	Het
Gpr3	A	G	4: 132,938,489 (GRCm39)	V61A	probably damaging	Het
Gulo	T	C	14: 66,237,470 (GRCm39)		probably null	Het
Hax1	GTCATCATCATCATCATC	GTCATCATCATCATCATCATC	3: 89,905,247 (GRCm39)		probably benign	Het
Hectd4	T	A	5: 121,462,037 (GRCm39)	I968K	possibly damaging	Het
Hmox2	G	T	16: 4,582,732 (GRCm39)	R155L	probably damaging	Het
Ifnlr1	C	A	4: 135,432,580 (GRCm39)	Q339K	probably damaging	Het
Ifnlr1	A	T	4: 135,432,581 (GRCm39)	Q339L	probably damaging	Het
Irf4	T	A	13: 30,941,741 (GRCm39)	S365T	probably benign	Het
Klrb1a	T	G	6: 128,595,472 (GRCm39)	D124A	probably damaging	Het
Macf1	A	T	4: 123,369,832 (GRCm39)	I78N	probably damaging	Het
Mctp1	G	T	13: 76,907,944 (GRCm39)		probably null	Het
Muc21	C	T	17: 35,934,123 (GRCm39)		probably benign	Het
Mxra8	A	T	4: 155,927,760 (GRCm39)		probably null	Het
Nlrp2	T	A	7: 5,327,902 (GRCm39)		probably null	Het
Or1e16	AGCGGTCGTAGGC	AGC	11: 73,286,480 (GRCm39)		probably null	Het
P2ry13	T	C	3: 59,116,786 (GRCm39)	T331A	probably benign	Het
Padi2	G	A	4: 140,644,952 (GRCm39)	R62H	probably benign	Het
Pcdhb15	A	T	18: 37,607,707 (GRCm39)	Q313L	probably benign	Het
Pcdhga11	A	G	18: 37,889,045 (GRCm39)	I18V	probably benign	Het
Pcdhga11	A	G	18: 37,891,142 (GRCm39)	R717G	probably benign	Het
Pcif1	C	A	2: 164,726,412 (GRCm39)		probably benign	Het
Pkd1l1	T	C	11: 8,813,849 (GRCm39)	T1501A	probably benign	Het
Plekhn1	T	C	4: 156,307,152 (GRCm39)	Y466C	probably damaging	Het
Sec22c	A	G	9: 121,519,368 (GRCm39)	S83P	possibly damaging	Het
Sgcz	T	A	8: 37,993,425 (GRCm39)	Q224L	possibly damaging	Het
Slc27a1	C	T	8: 72,036,907 (GRCm39)	P381L	probably benign	Het
Slc8a1	T	A	17: 81,955,431 (GRCm39)	I536F	probably damaging	Het
Src	T	A	2: 157,307,950 (GRCm39)		probably null	Het
Sybu	T	A	15: 44,651,017 (GRCm39)	T96S	probably damaging	Het
Tbc1d22a	T	C	15: 86,235,929 (GRCm39)	Y363H	probably damaging	Het
Tdrd6	T	C	17: 43,939,302 (GRCm39)	E582G	possibly damaging	Het
Tmem131	C	A	1: 36,858,209 (GRCm39)	V713L	probably benign	Het
Tnfsf13b	T	A	8: 10,056,988 (GRCm39)	L49Q	probably damaging	Het
Trem2	T	A	17: 48,653,661 (GRCm39)		probably benign	Het
Tspyl3	T	A	2: 153,066,636 (GRCm39)	M201L	probably benign	Het
Ttl	A	G	2: 128,917,961 (GRCm39)	D141G	probably benign	Het
Ube2z	A	G	11: 95,951,889 (GRCm39)	V153A	possibly damaging	Het
Ubr3	A	G	2: 69,851,559 (GRCm39)	Y1842C	probably damaging	Het
Usp33	T	C	3: 152,086,229 (GRCm39)	V656A	probably damaging	Het
Vmn2r74	G	A	7: 85,601,098 (GRCm39)	R847C	probably damaging	Het
Vmo1	A	T	11: 70,405,241 (GRCm39)	V63D	probably damaging	Het
Zcwpw1	T	A	5: 137,798,269 (GRCm39)	D155E	probably benign	Het
Zeb1	T	G	18: 5,766,765 (GRCm39)	S425R	possibly damaging	Het

Other mutations in Plekhg2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00815:Plekhg2	APN	7	28,060,294 (GRCm39)	nonsense	probably null
IGL00933:Plekhg2	APN	7	28,060,114 (GRCm39)	missense	probably benign	0.01
IGL02037:Plekhg2	APN	7	28,068,122 (GRCm39)	missense	probably damaging	1.00
IGL02103:Plekhg2	APN	7	28,059,501 (GRCm39)	missense	probably damaging	1.00
IGL02598:Plekhg2	APN	7	28,059,900 (GRCm39)	missense	possibly damaging	0.55
IGL02892:Plekhg2	APN	7	28,062,342 (GRCm39)	missense	probably damaging	1.00
IGL03249:Plekhg2	APN	7	28,067,427 (GRCm39)	missense	probably damaging	1.00
R0561:Plekhg2	UTSW	7	28,069,908 (GRCm39)	missense	probably benign
R1134:Plekhg2	UTSW	7	28,061,426 (GRCm39)	missense	probably damaging	0.99
R1619:Plekhg2	UTSW	7	28,067,846 (GRCm39)	missense	probably damaging	1.00
R2225:Plekhg2	UTSW	7	28,059,760 (GRCm39)	missense	probably benign	0.02
R4043:Plekhg2	UTSW	7	28,064,144 (GRCm39)	unclassified	probably benign
R4117:Plekhg2	UTSW	7	28,060,313 (GRCm39)	missense	probably benign	0.02
R4296:Plekhg2	UTSW	7	28,070,591 (GRCm39)	missense	probably damaging	1.00
R4956:Plekhg2	UTSW	7	28,067,780 (GRCm39)	missense	probably damaging	1.00
R5376:Plekhg2	UTSW	7	28,062,094 (GRCm39)	missense	probably damaging	0.99
R5378:Plekhg2	UTSW	7	28,062,094 (GRCm39)	missense	probably damaging	0.99
R5523:Plekhg2	UTSW	7	28,069,856 (GRCm39)	missense	probably damaging	1.00
R5545:Plekhg2	UTSW	7	28,061,886 (GRCm39)	missense	probably damaging	1.00
R5667:Plekhg2	UTSW	7	28,067,064 (GRCm39)	missense	probably damaging	1.00
R6017:Plekhg2	UTSW	7	28,062,309 (GRCm39)	missense	probably damaging	0.97
R6088:Plekhg2	UTSW	7	28,060,438 (GRCm39)	missense	probably benign	0.01
R6912:Plekhg2	UTSW	7	28,059,684 (GRCm39)	missense	probably benign	0.39
R7258:Plekhg2	UTSW	7	28,064,203 (GRCm39)	missense	probably benign	0.00
R7530:Plekhg2	UTSW	7	28,061,353 (GRCm39)	missense	probably damaging	1.00
R8054:Plekhg2	UTSW	7	28,064,741 (GRCm39)	missense	probably damaging	0.96
R8217:Plekhg2	UTSW	7	28,067,717 (GRCm39)	missense	probably null	1.00
R8441:Plekhg2	UTSW	7	28,060,291 (GRCm39)	missense	probably benign	0.34
R8855:Plekhg2	UTSW	7	28,069,526 (GRCm39)	missense	probably benign	0.25
R8877:Plekhg2	UTSW	7	28,060,278 (GRCm39)	missense	possibly damaging	0.74
R9234:Plekhg2	UTSW	7	28,064,215 (GRCm39)	missense	probably benign	0.21
R9464:Plekhg2	UTSW	7	28,062,297 (GRCm39)	missense	probably damaging	1.00
R9561:Plekhg2	UTSW	7	28,064,249 (GRCm39)	missense	probably damaging	0.96
R9593:Plekhg2	UTSW	7	28,059,710 (GRCm39)	missense	possibly damaging	0.56
R9773:Plekhg2	UTSW	7	28,069,743 (GRCm39)	missense	probably damaging	0.96
RF051:Plekhg2	UTSW	7	28,061,777 (GRCm39)	frame shift	probably null
Z1186:Plekhg2	UTSW	7	28,070,727 (GRCm39)	intron	probably benign
Z1186:Plekhg2	UTSW	7	28,062,360 (GRCm39)	missense	possibly damaging	0.77

Predicted Primers

PCR Primer
(F):5'- CCCTGGAAAGAGACATGGAC -3'
(R):5'- TGTGAGCCTATGCCAAGAGAG -3'

Sequencing Primer
(F):5'- GACATGGACAGACTGACAGACAC -3'
(R):5'- CCTATGCCAAGAGAGGAAATGTTTC -3'

Posted On

2017-02-28