Mutagenetix > Incidental Mutation

Incidental Mutation 'R6275:Ccr7'

507590

Institutional Source

Beutler Lab

Gene Symbol

Ccr7

Ensembl Gene

ENSMUSG00000037944

Gene Name

C-C motif chemokine receptor 7

Synonyms

EBI1, CD197, Cmkbr7, Ebi1h

MMRRC Submission

044445-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.259) question?

Stock #

R6275 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

99035025-99045903 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 99036489 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Isoleucine at position 144 (M144I)

Ref Sequence

ENSEMBL: ENSMUSP00000099423 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000103134]

AlphaFold

P47774

Predicted Effect

probably damaging
Transcript: ENSMUST00000103134
AA Change: M144I

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000099423
Gene: ENSMUSG00000037944
AA Change: M144I

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:7tm_1	75	326	1.8e-49	PFAM

Meta Mutation Damage Score

0.6695

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.3%
20x: 95.4%

Validation Efficiency

98% (56/57)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the G protein-coupled receptor family. This receptor was identified as a gene induced by the Epstein-Barr virus (EBV), and is thought to be a mediator of EBV effects on B lymphocytes. This receptor is expressed in various lymphoid tissues and activates B and T lymphocytes. It has been shown to control the migration of memory T cells to inflamed tissues, as well as stimulate dendritic cell maturation. The chemokine (C-C motif) ligand 19 (CCL19/ECL) has been reported to be a specific ligand of this receptor. Signals mediated by this receptor regulate T cell homeostasis in lymph nodes, and may also function in the activation and polarization of T cells, and in chronic inflammation pathogenesis. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Sep 2014]
PHENOTYPE: Homozygous mice exhibit an impaired primary immune response. Dendritic cells, B, T and T regulatory cells show impaired migration to the lymph nodes and secondary lymph organs exhibit morphological abnormalities. Lymphocytic infiltrates to the pancreas, lung and stomach are observed in aged mice. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca7	T	A	10: 79,833,625 (GRCm39)	L30H	probably damaging	Het
Abcb6	T	C	1: 75,149,195 (GRCm39)		probably null	Het
Acsbg1	T	A	9: 54,517,056 (GRCm39)	M586L	probably benign	Het
Ano6	A	T	15: 95,811,314 (GRCm39)	Y159F	probably damaging	Het
C1ql1	A	G	11: 102,830,575 (GRCm39)	I254T	probably damaging	Het
Ccdc81	T	C	7: 89,531,519 (GRCm39)	D318G	possibly damaging	Het
Cdca3	C	T	6: 124,809,627 (GRCm39)		probably null	Het
Ces1h	A	T	8: 94,099,274 (GRCm39)	L93I	probably benign	Het
Cntfr	T	C	4: 41,663,216 (GRCm39)	D197G	possibly damaging	Het
Cyp2d12	C	A	15: 82,440,859 (GRCm39)	P126T	probably benign	Het
Dnah10	A	G	5: 124,862,248 (GRCm39)	T2225A	probably damaging	Het
Edrf1	A	T	7: 133,269,311 (GRCm39)	N1147Y	possibly damaging	Het
Eif1ad15	T	C	12: 88,287,995 (GRCm39)	D86G	possibly damaging	Het
Eif1ad16	T	C	12: 87,985,255 (GRCm39)	N96S	probably benign	Het
Ermap	C	T	4: 119,035,747 (GRCm39)	V414M	probably damaging	Het
Fam13a	A	G	6: 58,931,242 (GRCm39)	I446T	probably damaging	Het
Fgfbp3	T	C	19: 36,896,153 (GRCm39)	H155R	possibly damaging	Het
Folr1	T	A	7: 101,508,742 (GRCm39)	N61I	probably damaging	Het
Fsip1	T	C	2: 118,035,583 (GRCm39)	I431V	probably benign	Het
Gm5493	A	T	17: 22,969,043 (GRCm39)	E74D	probably benign	Het
H2-Oa	A	G	17: 34,313,540 (GRCm39)	D197G	probably benign	Het
Hps1	T	C	19: 42,758,046 (GRCm39)	E169G	probably null	Het
Il17rc	A	T	6: 113,457,308 (GRCm39)	M372L	probably benign	Het
Itga10	A	G	3: 96,565,501 (GRCm39)	S1042G	probably benign	Het
Jchain	A	T	5: 88,669,212 (GRCm39)	V147E	probably damaging	Het
Laptm4b	A	G	15: 34,283,473 (GRCm39)	T211A	probably benign	Het
Mal2	T	C	15: 54,435,035 (GRCm39)		probably null	Het
Mov10l1	T	A	15: 88,910,823 (GRCm39)	I1071N	probably damaging	Het
Mpp2	T	A	11: 101,951,795 (GRCm39)	Y401F	probably damaging	Het
Myh15	A	G	16: 48,965,610 (GRCm39)	T1172A	probably benign	Het
Or51q1	T	A	7: 103,629,181 (GRCm39)	S261T	probably damaging	Het
Pcnx1	G	T	12: 81,965,381 (GRCm39)	S516I	probably benign	Het
Pidd1	C	T	7: 141,019,708 (GRCm39)	A685T	probably damaging	Het
Psg28	A	C	7: 18,164,365 (GRCm39)	Y116D	probably damaging	Het
Psmd11	T	C	11: 80,329,458 (GRCm39)		probably benign	Het
Rapgefl1	T	A	11: 98,741,946 (GRCm39)	Y637N	probably damaging	Het
Rbm25	T	A	12: 83,691,206 (GRCm39)	M66K	probably damaging	Het
Rnf38	T	A	4: 44,152,408 (GRCm39)	H52L	probably benign	Het
Rsf1	CGGCGGCGG	CGGCGGCGGTGGCGGCGG	7: 97,229,130 (GRCm39)		probably benign	Het
Sec62	A	G	3: 30,863,985 (GRCm39)	Q89R	probably damaging	Het
Serpina6	T	A	12: 103,614,979 (GRCm39)	Q289L	probably benign	Het
Sf3b2	A	C	19: 5,333,678 (GRCm39)	I640S	probably damaging	Het
Slc13a2	CGTTATCTGT	CGT	11: 78,294,306 (GRCm39)		probably benign	Het
Slc26a11	T	C	11: 119,250,125 (GRCm39)	F127L	probably benign	Het
Spata31h1	T	C	10: 82,121,202 (GRCm39)	D3936G	probably damaging	Het
Stac3	T	A	10: 127,343,615 (GRCm39)	Y252*	probably null	Het
Stoml3	G	A	3: 53,414,927 (GRCm39)	A240T	probably damaging	Het
Tanc1	A	T	2: 59,673,854 (GRCm39)	H1653L	probably benign	Het
Tll1	A	T	8: 64,504,401 (GRCm39)	L665*	probably null	Het
Tnr	A	C	1: 159,688,840 (GRCm39)	Q434P	probably damaging	Het
Tpgs1	C	A	10: 79,511,354 (GRCm39)	D165E	probably benign	Het
Tsc2	A	G	17: 24,819,394 (GRCm39)	V1185A	probably benign	Het
Tulp4	A	G	17: 6,249,011 (GRCm39)	H203R	probably damaging	Het
Txnl4a	T	A	18: 80,261,980 (GRCm39)	M72K	possibly damaging	Het
Usp42	G	A	5: 143,700,727 (GRCm39)	R1099W	probably damaging	Het
Zfp292	G	A	4: 34,808,883 (GRCm39)	A1387V	possibly damaging	Het
Zfp994	A	T	17: 22,418,972 (GRCm39)	L659*	probably null	Het

Other mutations in Ccr7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01600:Ccr7	APN	11	99,035,971 (GRCm39)	missense	probably benign	0.45
Kongtong	UTSW	11	99,036,489 (GRCm39)	missense	probably damaging	1.00
lanzhou	UTSW	11	99,036,103 (GRCm39)	missense	possibly damaging	0.90
qinghai	UTSW	11	99,036,649 (GRCm39)	missense	probably damaging	1.00
IGL03047:Ccr7	UTSW	11	99,036,160 (GRCm39)	missense	probably benign	0.44
R0707:Ccr7	UTSW	11	99,036,809 (GRCm39)	missense	probably damaging	1.00
R1115:Ccr7	UTSW	11	99,036,103 (GRCm39)	missense	possibly damaging	0.90
R1664:Ccr7	UTSW	11	99,036,517 (GRCm39)	missense	possibly damaging	0.90
R2291:Ccr7	UTSW	11	99,036,161 (GRCm39)	missense	probably damaging	1.00
R3743:Ccr7	UTSW	11	99,036,033 (GRCm39)	missense	possibly damaging	0.86
R4108:Ccr7	UTSW	11	99,036,204 (GRCm39)	missense	probably damaging	1.00
R4214:Ccr7	UTSW	11	99,035,872 (GRCm39)	missense	probably damaging	0.98
R5402:Ccr7	UTSW	11	99,036,560 (GRCm39)	missense	possibly damaging	0.93
R5602:Ccr7	UTSW	11	99,036,315 (GRCm39)	missense	probably benign	0.08
R6991:Ccr7	UTSW	11	99,036,130 (GRCm39)	missense	probably damaging	1.00
R7470:Ccr7	UTSW	11	99,036,383 (GRCm39)	missense	possibly damaging	0.80
R7549:Ccr7	UTSW	11	99,036,727 (GRCm39)	missense	probably damaging	1.00
R8973:Ccr7	UTSW	11	99,036,649 (GRCm39)	missense	probably damaging	1.00
R9117:Ccr7	UTSW	11	99,036,086 (GRCm39)	missense	probably damaging	1.00
R9206:Ccr7	UTSW	11	99,039,895 (GRCm39)	missense	probably benign
R9631:Ccr7	UTSW	11	99,036,616 (GRCm39)	missense	probably benign	0.01
Z1176:Ccr7	UTSW	11	99,035,806 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGATCAAGGCCTCCACTTGG -3'
(R):5'- GGCTCAAGACCATGACGGATAC -3'

Sequencing Primer
(F):5'- AGTGAGCATCTCAGCGTGTC -3'
(R):5'- GGATACCTACCTGCTCAACCTGG -3'

Posted On

2018-03-15