Incidental Mutation 'IGL01122:Eme2'
ID 53092
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Eme2
Ensembl Gene ENSMUSG00000073436
Gene Name essential meiotic structure-specific endonuclease subunit 2
Synonyms 2810013J18Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.103) question?
Stock # IGL01122
Quality Score
Status
Chromosome 17
Chromosomal Location 25111126-25114061 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 25112320 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 202 (A202T)
Ref Sequence ENSEMBL: ENSMUSP00000113167 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000024976] [ENSMUST00000024978] [ENSMUST00000043907] [ENSMUST00000068508] [ENSMUST00000088345] [ENSMUST00000115228] [ENSMUST00000115229] [ENSMUST00000121542] [ENSMUST00000119848] [ENSMUST00000119829] [ENSMUST00000120943] [ENSMUST00000130194] [ENSMUST00000121787] [ENSMUST00000117509] [ENSMUST00000117890] [ENSMUST00000121723] [ENSMUST00000139754] [ENSMUST00000146923] [ENSMUST00000154236] [ENSMUST00000178969] [ENSMUST00000144430] [ENSMUST00000168265]
AlphaFold Q56A04
Predicted Effect probably benign
Transcript: ENSMUST00000024976
SMART Domains Protein: ENSMUSP00000024976
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 34 45 N/A INTRINSIC
low complexity region 52 65 N/A INTRINSIC
low complexity region 73 84 N/A INTRINSIC
low complexity region 133 144 N/A INTRINSIC
Pfam:SPRY 181 304 5.7e-18 PFAM
SOCS_box 309 347 2.8e0 SMART
low complexity region 364 373 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000024978
SMART Domains Protein: ENSMUSP00000024978
Gene: ENSMUSG00000073435

DomainStartEndE-ValueType
NDK 21 158 1.06e-90 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000043907
SMART Domains Protein: ENSMUSP00000045111
Gene: ENSMUSG00000038880

DomainStartEndE-ValueType
low complexity region 9 25 N/A INTRINSIC
Pfam:MRP-S34 61 187 5.3e-52 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000068508
SMART Domains Protein: ENSMUSP00000068567
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 17 30 N/A INTRINSIC
low complexity region 38 49 N/A INTRINSIC
low complexity region 98 109 N/A INTRINSIC
Pfam:SPRY 146 252 1.3e-13 PFAM
low complexity region 295 308 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000088345
SMART Domains Protein: ENSMUSP00000085683
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1.4e-72 PFAM
low complexity region 236 249 N/A INTRINSIC
low complexity region 261 270 N/A INTRINSIC
PDB:2W83|D 417 472 6e-20 PDB
coiled coil region 525 555 N/A INTRINSIC
low complexity region 582 596 N/A INTRINSIC
low complexity region 754 769 N/A INTRINSIC
low complexity region 893 901 N/A INTRINSIC
low complexity region 928 940 N/A INTRINSIC
SCOP:d1flga_ 987 1167 4e-8 SMART
Blast:WD40 1075 1116 6e-18 BLAST
low complexity region 1260 1276 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000115228
SMART Domains Protein: ENSMUSP00000110883
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1.4e-72 PFAM
low complexity region 236 249 N/A INTRINSIC
low complexity region 261 270 N/A INTRINSIC
PDB:2W83|D 411 466 7e-20 PDB
low complexity region 567 581 N/A INTRINSIC
low complexity region 739 754 N/A INTRINSIC
low complexity region 878 886 N/A INTRINSIC
low complexity region 913 925 N/A INTRINSIC
SCOP:d1flga_ 972 1152 3e-8 SMART
Blast:WD40 1060 1101 6e-18 BLAST
low complexity region 1245 1261 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000115229
SMART Domains Protein: ENSMUSP00000110884
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 184 2.9e-60 PFAM
low complexity region 244 257 N/A INTRINSIC
low complexity region 269 278 N/A INTRINSIC
Pfam:JIP_LZII 423 493 3.1e-32 PFAM
coiled coil region 533 563 N/A INTRINSIC
low complexity region 590 604 N/A INTRINSIC
low complexity region 762 777 N/A INTRINSIC
low complexity region 901 909 N/A INTRINSIC
low complexity region 936 948 N/A INTRINSIC
SCOP:d1flga_ 995 1175 4e-8 SMART
Blast:WD40 1083 1124 7e-18 BLAST
low complexity region 1268 1284 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000121542
AA Change: A202T

PolyPhen 2 Score 0.202 (Sensitivity: 0.92; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000113936
Gene: ENSMUSG00000073436
AA Change: A202T

DomainStartEndE-ValueType
low complexity region 13 24 N/A INTRINSIC
ERCC4 71 320 1.4e-23 SMART
low complexity region 366 373 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000119848
AA Change: A202T

PolyPhen 2 Score 0.529 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000113167
Gene: ENSMUSG00000073436
AA Change: A202T

DomainStartEndE-ValueType
low complexity region 13 24 N/A INTRINSIC
ERCC4 71 320 8.51e-23 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134932
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127293
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128953
Predicted Effect noncoding transcript
Transcript: ENSMUST00000138648
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125532
Predicted Effect probably benign
Transcript: ENSMUST00000119829
SMART Domains Protein: ENSMUSP00000112589
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 17 30 N/A INTRINSIC
low complexity region 38 49 N/A INTRINSIC
low complexity region 98 109 N/A INTRINSIC
Pfam:SPRY 146 294 6.9e-16 PFAM
SOCS_box 299 337 2.8e0 SMART
low complexity region 354 363 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000120943
SMART Domains Protein: ENSMUSP00000112492
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 17 30 N/A INTRINSIC
low complexity region 38 49 N/A INTRINSIC
low complexity region 98 109 N/A INTRINSIC
Pfam:SPRY 146 269 1.6e-18 PFAM
SOCS_box 274 312 2.8e0 SMART
low complexity region 329 338 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000130194
SMART Domains Protein: ENSMUSP00000119896
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 17 30 N/A INTRINSIC
low complexity region 38 49 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000121787
SMART Domains Protein: ENSMUSP00000113753
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 3.8e-73 PFAM
low complexity region 230 239 N/A INTRINSIC
PDB:2W83|D 380 435 8e-20 PDB
coiled coil region 488 518 N/A INTRINSIC
low complexity region 545 559 N/A INTRINSIC
low complexity region 717 732 N/A INTRINSIC
low complexity region 856 864 N/A INTRINSIC
low complexity region 891 903 N/A INTRINSIC
SCOP:d1flga_ 950 1130 3e-8 SMART
Blast:WD40 1038 1079 6e-18 BLAST
low complexity region 1223 1239 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000117509
SMART Domains Protein: ENSMUSP00000112712
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1.4e-72 PFAM
low complexity region 238 247 N/A INTRINSIC
PDB:2W83|D 394 449 7e-20 PDB
coiled coil region 502 532 N/A INTRINSIC
low complexity region 559 573 N/A INTRINSIC
low complexity region 731 746 N/A INTRINSIC
low complexity region 870 878 N/A INTRINSIC
low complexity region 905 917 N/A INTRINSIC
SCOP:d1flga_ 964 1144 3e-8 SMART
Blast:WD40 1052 1093 6e-18 BLAST
low complexity region 1237 1253 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000117890
SMART Domains Protein: ENSMUSP00000112380
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 17 30 N/A INTRINSIC
low complexity region 38 49 N/A INTRINSIC
low complexity region 98 109 N/A INTRINSIC
Pfam:SPRY 146 269 1.6e-18 PFAM
SOCS_box 274 312 2.8e0 SMART
low complexity region 329 338 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000121723
SMART Domains Protein: ENSMUSP00000113698
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1e-72 PFAM
low complexity region 230 239 N/A INTRINSIC
PDB:2W83|D 386 441 7e-20 PDB
coiled coil region 494 524 N/A INTRINSIC
low complexity region 551 565 N/A INTRINSIC
low complexity region 723 738 N/A INTRINSIC
low complexity region 862 870 N/A INTRINSIC
low complexity region 897 909 N/A INTRINSIC
SCOP:d1flga_ 956 1136 3e-8 SMART
Blast:WD40 1044 1085 5e-18 BLAST
low complexity region 1229 1245 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000145882
Predicted Effect noncoding transcript
Transcript: ENSMUST00000145688
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156659
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154321
Predicted Effect noncoding transcript
Transcript: ENSMUST00000140688
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150500
Predicted Effect probably benign
Transcript: ENSMUST00000139754
SMART Domains Protein: ENSMUSP00000118245
Gene: ENSMUSG00000073436

DomainStartEndE-ValueType
low complexity region 13 24 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000146923
SMART Domains Protein: ENSMUSP00000114802
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1.4e-72 PFAM
low complexity region 236 249 N/A INTRINSIC
low complexity region 261 270 N/A INTRINSIC
PDB:2W83|D 417 472 6e-20 PDB
coiled coil region 525 555 N/A INTRINSIC
low complexity region 582 596 N/A INTRINSIC
low complexity region 754 769 N/A INTRINSIC
low complexity region 893 901 N/A INTRINSIC
low complexity region 928 940 N/A INTRINSIC
SCOP:d1flga_ 987 1167 4e-8 SMART
Blast:WD40 1075 1116 6e-18 BLAST
low complexity region 1260 1276 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000154236
SMART Domains Protein: ENSMUSP00000120985
Gene: ENSMUSG00000038880

DomainStartEndE-ValueType
low complexity region 9 25 N/A INTRINSIC
low complexity region 59 79 N/A INTRINSIC
Blast:NDK 172 208 3e-12 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000178969
SMART Domains Protein: ENSMUSP00000136924
Gene: ENSMUSG00000024163

DomainStartEndE-ValueType
Pfam:Jnk-SapK_ap_N 29 186 1.1e-72 PFAM
low complexity region 236 249 N/A INTRINSIC
low complexity region 261 270 N/A INTRINSIC
PDB:2W83|D 417 472 6e-20 PDB
coiled coil region 525 555 N/A INTRINSIC
low complexity region 582 596 N/A INTRINSIC
low complexity region 754 769 N/A INTRINSIC
low complexity region 893 901 N/A INTRINSIC
low complexity region 928 940 N/A INTRINSIC
SCOP:d1flga_ 987 1167 3e-8 SMART
Blast:WD40 1075 1116 6e-18 BLAST
low complexity region 1260 1276 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000144430
SMART Domains Protein: ENSMUSP00000117226
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 43 58 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000168265
SMART Domains Protein: ENSMUSP00000126878
Gene: ENSMUSG00000024160

DomainStartEndE-ValueType
low complexity region 29 42 N/A INTRINSIC
low complexity region 55 69 N/A INTRINSIC
low complexity region 145 156 N/A INTRINSIC
low complexity region 163 176 N/A INTRINSIC
low complexity region 184 195 N/A INTRINSIC
low complexity region 244 255 N/A INTRINSIC
Pfam:SPRY 294 416 5.8e-20 PFAM
SOCS_box 420 458 2.8e0 SMART
low complexity region 475 484 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] EME2 forms a heterodimer with MUS81 (MIM 606591) that functions as an XPF (MIM 278760)-type flap/fork endonuclease in DNA repair (Ciccia et al., 2007 [PubMed 17289582]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arhgap6 A T X: 168,029,666 (GRCm39) K142N possibly damaging Het
Atp13a1 T A 8: 70,251,555 (GRCm39) L540Q probably damaging Het
Cacna1a T C 8: 85,341,422 (GRCm39) probably null Het
Cops6 A G 5: 138,160,635 (GRCm39) K129E probably benign Het
Cracd T C 5: 77,018,522 (GRCm39) *1289Q probably null Het
Cyp11a1 T C 9: 57,923,589 (GRCm39) I98T probably damaging Het
Cyp2c65 A G 19: 39,060,621 (GRCm39) probably null Het
Dapl1 A T 2: 59,324,839 (GRCm39) K30I probably damaging Het
Dlg2 A G 7: 92,091,816 (GRCm39) M894V possibly damaging Het
Fbxw22 A T 9: 109,215,739 (GRCm39) S170T probably damaging Het
Havcr2 A G 11: 46,347,254 (GRCm39) Y77C probably damaging Het
Ivd T A 2: 118,707,361 (GRCm39) probably benign Het
Map3k9 T C 12: 81,778,900 (GRCm39) D471G possibly damaging Het
Med12 T C X: 100,325,149 (GRCm39) probably benign Het
Megf6 C T 4: 154,338,264 (GRCm39) R445W probably damaging Het
Mptx1 A G 1: 174,159,964 (GRCm39) Y90C probably damaging Het
Nek1 G A 8: 61,574,000 (GRCm39) V1083I possibly damaging Het
Nepn T A 10: 52,267,911 (GRCm39) I59N probably damaging Het
Or4a72 A G 2: 89,405,767 (GRCm39) I101T possibly damaging Het
Pbdc1 T C X: 104,126,297 (GRCm39) probably benign Het
Phlpp1 G T 1: 106,101,166 (GRCm39) R478L possibly damaging Het
Ppp2r3c C T 12: 55,344,587 (GRCm39) G127D probably benign Het
Ppp2r3d A G 9: 101,088,844 (GRCm39) L493P probably benign Het
Pramel24 A G 4: 143,454,971 (GRCm39) D423G probably benign Het
Psap T C 10: 60,135,253 (GRCm39) V303A probably benign Het
Rdh13 T C 7: 4,445,694 (GRCm39) K60R probably benign Het
Scaf4 A G 16: 90,045,518 (GRCm39) S528P unknown Het
Sfmbt1 A G 14: 30,532,268 (GRCm39) I543V probably damaging Het
Speg T C 1: 75,386,679 (GRCm39) L1271P probably damaging Het
Stard9 C A 2: 120,528,960 (GRCm39) T1739K possibly damaging Het
Tas2r134 G T 2: 51,517,671 (GRCm39) C50F probably damaging Het
Tmprss11b G T 5: 86,811,376 (GRCm39) T186K probably benign Het
U2surp G T 9: 95,372,287 (GRCm39) Q291K probably benign Het
Ulk4 A G 9: 120,997,358 (GRCm39) I738T possibly damaging Het
Urb1 A T 16: 90,601,346 (GRCm39) S142T possibly damaging Het
Vmn2r112 T A 17: 22,821,988 (GRCm39) I222N probably benign Het
Zmym4 T C 4: 126,758,045 (GRCm39) N1503S probably damaging Het
Other mutations in Eme2
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0930:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1163:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1302:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1386:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1398:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1522:Eme2 UTSW 17 25,111,892 (GRCm39) missense probably damaging 1.00
R1762:Eme2 UTSW 17 25,112,367 (GRCm39) missense probably benign 0.00
R2327:Eme2 UTSW 17 25,113,157 (GRCm39) missense probably damaging 1.00
R4410:Eme2 UTSW 17 25,112,598 (GRCm39) missense probably benign 0.05
R4635:Eme2 UTSW 17 25,113,882 (GRCm39) missense probably benign 0.12
R7285:Eme2 UTSW 17 25,113,543 (GRCm39) critical splice donor site probably null
R7315:Eme2 UTSW 17 25,113,840 (GRCm39) missense probably damaging 1.00
R7316:Eme2 UTSW 17 25,113,840 (GRCm39) missense probably damaging 1.00
R8112:Eme2 UTSW 17 25,113,809 (GRCm39) missense probably damaging 1.00
R8687:Eme2 UTSW 17 25,113,813 (GRCm39) missense possibly damaging 0.84
R9258:Eme2 UTSW 17 25,112,053 (GRCm39) missense probably damaging 1.00
R9285:Eme2 UTSW 17 25,108,132 (GRCm39) intron probably benign
R9517:Eme2 UTSW 17 25,114,033 (GRCm39) unclassified probably benign
Z1088:Eme2 UTSW 17 25,113,541 (GRCm39) splice site probably null
Posted On 2013-06-21