Incidental Mutation 'IGL01324:Nfkbiz'
ID |
74165 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Nfkbiz
|
Ensembl Gene |
ENSMUSG00000035356 |
Gene Name |
nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta |
Synonyms |
Mail |
Accession Numbers |
|
Essential gene? |
Possibly essential
(E-score: 0.646)
|
Stock # |
IGL01324
|
Quality Score |
|
Status
|
|
Chromosome |
16 |
Chromosomal Location |
55631740-55659018 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 55636167 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 564
(T564A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000110102
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000036273]
[ENSMUST00000096026]
[ENSMUST00000114457]
[ENSMUST00000114458]
|
AlphaFold |
Q9EST8 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000036273
AA Change: T564A
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000041173 Gene: ENSMUSG00000035356 AA Change: T564A
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
83 |
N/A |
INTRINSIC |
low complexity region
|
289 |
315 |
N/A |
INTRINSIC |
ANK
|
453 |
482 |
1.29e2 |
SMART |
ANK
|
489 |
518 |
4.93e0 |
SMART |
ANK
|
522 |
551 |
1.63e0 |
SMART |
ANK
|
561 |
591 |
7.89e1 |
SMART |
ANK
|
622 |
651 |
1.17e-1 |
SMART |
ANK
|
658 |
691 |
2.92e-2 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000096026
AA Change: T465A
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000093726 Gene: ENSMUSG00000035356 AA Change: T465A
Domain | Start | End | E-Value | Type |
low complexity region
|
190 |
216 |
N/A |
INTRINSIC |
ANK
|
354 |
383 |
1.29e2 |
SMART |
ANK
|
390 |
419 |
4.93e0 |
SMART |
ANK
|
423 |
452 |
1.63e0 |
SMART |
ANK
|
462 |
492 |
7.89e1 |
SMART |
ANK
|
523 |
552 |
1.17e-1 |
SMART |
ANK
|
559 |
592 |
2.92e-2 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000114457
AA Change: T465A
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000110101 Gene: ENSMUSG00000035356 AA Change: T465A
Domain | Start | End | E-Value | Type |
low complexity region
|
190 |
216 |
N/A |
INTRINSIC |
ANK
|
354 |
383 |
1.29e2 |
SMART |
ANK
|
390 |
419 |
4.93e0 |
SMART |
ANK
|
423 |
452 |
1.63e0 |
SMART |
ANK
|
462 |
492 |
7.89e1 |
SMART |
ANK
|
523 |
552 |
1.17e-1 |
SMART |
ANK
|
559 |
592 |
2.92e-2 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000114458
AA Change: T564A
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000110102 Gene: ENSMUSG00000035356 AA Change: T564A
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
83 |
N/A |
INTRINSIC |
low complexity region
|
289 |
315 |
N/A |
INTRINSIC |
ANK
|
453 |
482 |
1.29e2 |
SMART |
ANK
|
489 |
518 |
4.93e0 |
SMART |
ANK
|
522 |
551 |
1.63e0 |
SMART |
ANK
|
561 |
591 |
7.89e1 |
SMART |
ANK
|
622 |
651 |
1.17e-1 |
SMART |
ANK
|
658 |
691 |
2.92e-2 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231463
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the ankyrin-repeat family and is induced by lipopolysaccharide (LPS). The C-terminal portion of the encoded product which contains the ankyrin repeats, shares high sequence similarity with the I kappa B family of proteins. The latter are known to play a role in inflammatory responses to LPS by their interaction with NF-B proteins through ankyrin-repeat domains. Studies in mouse indicate that this gene product is one of the nuclear I kappa B proteins and an activator of IL-6 production. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] PHENOTYPE: Homozygous inactivation of this gene may lead to background sensitive prenatal lethality and results in abnormal cytokine secretion, higher IgE levels, ocular surface and perioral skin inflammation accompanied by hair loss, and severe atopic dermatitis-like skin lesions. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Ahnak |
G |
A |
19: 8,980,396 (GRCm39) |
G560D |
probably damaging |
Het |
Ap1g1 |
T |
A |
8: 110,559,414 (GRCm39) |
D239E |
possibly damaging |
Het |
Ap2a1 |
T |
A |
7: 44,555,120 (GRCm39) |
T482S |
probably damaging |
Het |
BC004004 |
T |
C |
17: 29,501,225 (GRCm39) |
L58P |
probably damaging |
Het |
Camsap1 |
C |
A |
2: 25,823,635 (GRCm39) |
V1472L |
possibly damaging |
Het |
Ces3b |
A |
T |
8: 105,819,884 (GRCm39) |
E569V |
probably damaging |
Het |
Commd6 |
G |
A |
14: 101,877,738 (GRCm39) |
|
probably benign |
Het |
Ddx54 |
A |
G |
5: 120,761,703 (GRCm39) |
D493G |
probably benign |
Het |
Dync1h1 |
C |
T |
12: 110,593,299 (GRCm39) |
R1189C |
probably damaging |
Het |
Ern2 |
T |
A |
7: 121,782,413 (GRCm39) |
I68F |
possibly damaging |
Het |
Eya4 |
A |
G |
10: 22,992,449 (GRCm39) |
|
probably null |
Het |
Gda |
A |
T |
19: 21,387,250 (GRCm39) |
I325K |
probably damaging |
Het |
Gmnn |
T |
C |
13: 24,936,105 (GRCm39) |
T190A |
probably benign |
Het |
Hdac4 |
G |
A |
1: 91,887,137 (GRCm39) |
P801S |
probably damaging |
Het |
Hnrnph3 |
A |
T |
10: 62,853,903 (GRCm39) |
*72K |
probably null |
Het |
Hoxd12 |
A |
T |
2: 74,505,480 (GRCm39) |
N17I |
probably damaging |
Het |
Incenp |
G |
A |
19: 9,861,092 (GRCm39) |
R497C |
unknown |
Het |
Iqsec1 |
C |
A |
6: 90,666,685 (GRCm39) |
R584L |
probably damaging |
Het |
Kcnip1 |
A |
G |
11: 33,595,603 (GRCm39) |
M1T |
probably null |
Het |
Kcnu1 |
T |
A |
8: 26,339,735 (GRCm39) |
S18T |
probably benign |
Het |
Lepr |
T |
A |
4: 101,625,265 (GRCm39) |
D473E |
probably benign |
Het |
Nsd3 |
C |
T |
8: 26,152,836 (GRCm39) |
T392I |
probably damaging |
Het |
Or10a5 |
T |
C |
7: 106,636,054 (GRCm39) |
S231P |
probably damaging |
Het |
Or10w1 |
T |
C |
19: 13,632,297 (GRCm39) |
I163T |
probably damaging |
Het |
P4ha2 |
A |
G |
11: 54,010,984 (GRCm39) |
D333G |
probably damaging |
Het |
Parg |
T |
C |
14: 32,018,142 (GRCm39) |
|
probably benign |
Het |
Psmc2 |
G |
A |
5: 22,005,007 (GRCm39) |
|
probably null |
Het |
Rnf213 |
A |
G |
11: 119,338,063 (GRCm39) |
Y3354C |
probably damaging |
Het |
Siglec1 |
T |
G |
2: 130,927,461 (GRCm39) |
D115A |
probably damaging |
Het |
Slit3 |
G |
T |
11: 35,501,529 (GRCm39) |
G421V |
probably damaging |
Het |
Srgap3 |
T |
A |
6: 112,716,358 (GRCm39) |
H590L |
probably damaging |
Het |
Stk36 |
A |
C |
1: 74,664,769 (GRCm39) |
T628P |
possibly damaging |
Het |
Stx12 |
A |
T |
4: 132,590,576 (GRCm39) |
M107K |
probably benign |
Het |
Syne2 |
G |
T |
12: 76,090,526 (GRCm39) |
V5105F |
probably damaging |
Het |
Tecta |
T |
C |
9: 42,256,727 (GRCm39) |
S1650G |
probably damaging |
Het |
Tlr1 |
T |
C |
5: 65,082,522 (GRCm39) |
N685S |
probably damaging |
Het |
Trio |
A |
G |
15: 27,905,409 (GRCm39) |
V60A |
probably benign |
Het |
Ttyh3 |
G |
A |
5: 140,617,268 (GRCm39) |
R334W |
probably benign |
Het |
Ube2u |
A |
G |
4: 100,336,422 (GRCm39) |
E15G |
possibly damaging |
Het |
Ush2a |
G |
T |
1: 188,581,189 (GRCm39) |
V3690L |
probably benign |
Het |
Xab2 |
A |
G |
8: 3,671,232 (GRCm39) |
V16A |
possibly damaging |
Het |
|
Other mutations in Nfkbiz |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00484:Nfkbiz
|
APN |
16 |
55,638,272 (GRCm39) |
missense |
probably benign |
|
IGL02086:Nfkbiz
|
APN |
16 |
55,636,034 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02627:Nfkbiz
|
APN |
16 |
55,636,714 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02740:Nfkbiz
|
APN |
16 |
55,638,317 (GRCm39) |
missense |
probably benign |
|
R0349:Nfkbiz
|
UTSW |
16 |
55,639,354 (GRCm39) |
critical splice donor site |
probably null |
|
R0539:Nfkbiz
|
UTSW |
16 |
55,638,242 (GRCm39) |
missense |
probably benign |
0.08 |
R0827:Nfkbiz
|
UTSW |
16 |
55,636,730 (GRCm39) |
missense |
probably damaging |
1.00 |
R1403:Nfkbiz
|
UTSW |
16 |
55,636,833 (GRCm39) |
splice site |
probably benign |
|
R1743:Nfkbiz
|
UTSW |
16 |
55,636,757 (GRCm39) |
missense |
possibly damaging |
0.82 |
R2090:Nfkbiz
|
UTSW |
16 |
55,636,818 (GRCm39) |
missense |
probably benign |
0.01 |
R2163:Nfkbiz
|
UTSW |
16 |
55,638,581 (GRCm39) |
missense |
probably benign |
0.00 |
R3195:Nfkbiz
|
UTSW |
16 |
55,639,991 (GRCm39) |
missense |
probably damaging |
1.00 |
R3974:Nfkbiz
|
UTSW |
16 |
55,638,799 (GRCm39) |
missense |
probably benign |
0.42 |
R4513:Nfkbiz
|
UTSW |
16 |
55,637,204 (GRCm39) |
missense |
probably benign |
0.20 |
R4765:Nfkbiz
|
UTSW |
16 |
55,639,387 (GRCm39) |
critical splice acceptor site |
probably null |
|
R4864:Nfkbiz
|
UTSW |
16 |
55,638,787 (GRCm39) |
missense |
probably damaging |
1.00 |
R5134:Nfkbiz
|
UTSW |
16 |
55,638,863 (GRCm39) |
missense |
probably damaging |
1.00 |
R5265:Nfkbiz
|
UTSW |
16 |
55,640,004 (GRCm39) |
missense |
probably damaging |
1.00 |
R5510:Nfkbiz
|
UTSW |
16 |
55,634,383 (GRCm39) |
missense |
probably damaging |
1.00 |
R6327:Nfkbiz
|
UTSW |
16 |
55,642,325 (GRCm39) |
missense |
probably damaging |
1.00 |
R7083:Nfkbiz
|
UTSW |
16 |
55,638,663 (GRCm39) |
missense |
possibly damaging |
0.88 |
R7369:Nfkbiz
|
UTSW |
16 |
55,642,209 (GRCm39) |
missense |
probably damaging |
1.00 |
R7650:Nfkbiz
|
UTSW |
16 |
55,638,202 (GRCm39) |
missense |
probably benign |
0.34 |
R7941:Nfkbiz
|
UTSW |
16 |
55,642,307 (GRCm39) |
missense |
probably damaging |
0.98 |
R8193:Nfkbiz
|
UTSW |
16 |
55,642,214 (GRCm39) |
missense |
probably damaging |
0.96 |
R8402:Nfkbiz
|
UTSW |
16 |
55,636,750 (GRCm39) |
missense |
probably damaging |
0.98 |
R9222:Nfkbiz
|
UTSW |
16 |
55,634,347 (GRCm39) |
missense |
probably damaging |
1.00 |
R9420:Nfkbiz
|
UTSW |
16 |
55,642,337 (GRCm39) |
missense |
probably damaging |
0.99 |
R9457:Nfkbiz
|
UTSW |
16 |
55,634,347 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Nfkbiz
|
UTSW |
16 |
55,638,599 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Nfkbiz
|
UTSW |
16 |
55,636,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2013-10-07 |