Incidental Mutation 'IGL01336:Slc30a6'
| ID |
74643 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Slc30a6
|
| Ensembl Gene |
ENSMUSG00000024069 |
| Gene Name |
solute carrier family 30 (zinc transporter), member 6 |
| Synonyms |
ZnT-6, ZnT6 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.355)
|
| Stock # |
IGL01336
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
17 |
| Chromosomal Location |
74702603-74731216 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
A to G
at 74715834 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000136503
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000024870]
[ENSMUST00000179074]
|
| AlphaFold |
Q8BJM5 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000024870
|
| SMART Domains |
Protein: ENSMUSP00000024870
Gene: ENSMUSG00000024069
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Cation_efflux
|
34 |
336 |
6.9e-45 |
PFAM |
|
low complexity region
|
371 |
392 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000179074
|
| SMART Domains |
Protein: ENSMUSP00000136503
Gene: ENSMUSG00000024069
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Cation_efflux
|
34 |
260 |
5.7e-30 |
PFAM |
|
low complexity region
|
376 |
397 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that function as zinc transporters. This protein can regulate subcellular levels of zinc in the Golgi and vesicles. Expression of this gene is altered in the Alzheimer's disease brain plaques. [provided by RefSeq, Aug 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 32 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acly |
G |
T |
11: 100,386,736 (GRCm39) |
L599I |
probably benign |
Het |
| Adcyap1 |
A |
G |
17: 93,511,392 (GRCm39) |
D122G |
probably benign |
Het |
| Ahr |
A |
G |
12: 35,553,839 (GRCm39) |
V760A |
probably benign |
Het |
| Ankrd7 |
T |
C |
6: 18,868,277 (GRCm39) |
V133A |
probably benign |
Het |
| Bsn |
A |
G |
9: 107,988,984 (GRCm39) |
V2256A |
probably damaging |
Het |
| Cblb |
A |
G |
16: 52,006,592 (GRCm39) |
K765E |
probably benign |
Het |
| Clmp |
A |
G |
9: 40,693,906 (GRCm39) |
*374W |
probably null |
Het |
| Ddc |
A |
G |
11: 11,796,630 (GRCm39) |
|
probably null |
Het |
| Dnah10 |
A |
G |
5: 124,852,576 (GRCm39) |
Y1878C |
probably damaging |
Het |
| Ei24 |
A |
G |
9: 36,697,777 (GRCm39) |
|
probably null |
Het |
| Ikbke |
A |
G |
1: 131,201,493 (GRCm39) |
M118T |
probably damaging |
Het |
| Il6st |
T |
C |
13: 112,616,773 (GRCm39) |
S107P |
possibly damaging |
Het |
| Map2k6 |
A |
G |
11: 110,387,237 (GRCm39) |
Y203C |
probably damaging |
Het |
| Mettl27 |
C |
T |
5: 134,964,734 (GRCm39) |
|
probably benign |
Het |
| Mrps14 |
G |
A |
1: 160,024,565 (GRCm39) |
W32* |
probably null |
Het |
| Naaa |
A |
C |
5: 92,412,992 (GRCm39) |
M208R |
probably benign |
Het |
| Nat2 |
A |
G |
8: 67,954,193 (GRCm39) |
Y101C |
probably damaging |
Het |
| Ncoa3 |
A |
G |
2: 165,896,443 (GRCm39) |
S449G |
probably benign |
Het |
| Or4e5 |
A |
G |
14: 52,728,205 (GRCm39) |
I72T |
probably damaging |
Het |
| Or6z7 |
T |
C |
7: 6,483,997 (GRCm39) |
I53V |
probably benign |
Het |
| Phykpl |
G |
A |
11: 51,490,283 (GRCm39) |
|
probably benign |
Het |
| Psma5-ps |
T |
C |
10: 85,150,028 (GRCm39) |
|
noncoding transcript |
Het |
| Rasgrf1 |
A |
T |
9: 89,873,583 (GRCm39) |
M631L |
probably benign |
Het |
| Rgma |
G |
A |
7: 73,059,066 (GRCm39) |
V57M |
possibly damaging |
Het |
| Samd4b |
G |
T |
7: 28,113,388 (GRCm39) |
D192E |
probably benign |
Het |
| Sesn2 |
T |
C |
4: 132,226,678 (GRCm39) |
T139A |
probably benign |
Het |
| Spata31f1e |
T |
A |
4: 42,793,784 (GRCm39) |
Q116L |
possibly damaging |
Het |
| Stra8 |
T |
C |
6: 34,910,123 (GRCm39) |
Y182H |
possibly damaging |
Het |
| Trim31 |
C |
A |
17: 37,220,269 (GRCm39) |
A395E |
probably damaging |
Het |
| Trp53bp2 |
G |
T |
1: 182,259,148 (GRCm39) |
R67L |
probably damaging |
Het |
| Trpa1 |
A |
C |
1: 14,957,104 (GRCm39) |
|
probably benign |
Het |
| Wdr91 |
G |
A |
6: 34,886,478 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Slc30a6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01592:Slc30a6
|
APN |
17 |
74,726,523 (GRCm39) |
splice site |
probably benign |
|
|
IGL02556:Slc30a6
|
APN |
17 |
74,711,054 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03033:Slc30a6
|
APN |
17 |
74,716,373 (GRCm39) |
nonsense |
probably null |
|
|
IGL03149:Slc30a6
|
APN |
17 |
74,730,018 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0355:Slc30a6
|
UTSW |
17 |
74,730,198 (GRCm39) |
missense |
probably benign |
|
|
R0791:Slc30a6
|
UTSW |
17 |
74,722,640 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R0792:Slc30a6
|
UTSW |
17 |
74,722,640 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R1507:Slc30a6
|
UTSW |
17 |
74,715,857 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1517:Slc30a6
|
UTSW |
17 |
74,715,842 (GRCm39) |
missense |
probably benign |
0.25 |
|
R1585:Slc30a6
|
UTSW |
17 |
74,725,610 (GRCm39) |
splice site |
probably benign |
|
|
R1944:Slc30a6
|
UTSW |
17 |
74,715,858 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2925:Slc30a6
|
UTSW |
17 |
74,708,999 (GRCm39) |
splice site |
probably benign |
|
|
R3891:Slc30a6
|
UTSW |
17 |
74,726,541 (GRCm39) |
missense |
probably benign |
0.19 |
|
R4840:Slc30a6
|
UTSW |
17 |
74,712,716 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4863:Slc30a6
|
UTSW |
17 |
74,719,649 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R5330:Slc30a6
|
UTSW |
17 |
74,730,190 (GRCm39) |
missense |
probably benign |
0.24 |
|
R5331:Slc30a6
|
UTSW |
17 |
74,730,190 (GRCm39) |
missense |
probably benign |
0.24 |
|
R5562:Slc30a6
|
UTSW |
17 |
74,719,700 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6458:Slc30a6
|
UTSW |
17 |
74,730,108 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6681:Slc30a6
|
UTSW |
17 |
74,711,027 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R7419:Slc30a6
|
UTSW |
17 |
74,730,424 (GRCm39) |
missense |
probably benign |
|
|
R7457:Slc30a6
|
UTSW |
17 |
74,714,233 (GRCm39) |
missense |
probably benign |
0.05 |
|
R7596:Slc30a6
|
UTSW |
17 |
74,722,664 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7844:Slc30a6
|
UTSW |
17 |
74,711,088 (GRCm39) |
splice site |
probably null |
|
|
R8043:Slc30a6
|
UTSW |
17 |
74,730,018 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8097:Slc30a6
|
UTSW |
17 |
74,719,693 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8465:Slc30a6
|
UTSW |
17 |
74,722,661 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8557:Slc30a6
|
UTSW |
17 |
74,712,685 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R8878:Slc30a6
|
UTSW |
17 |
74,730,112 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9035:Slc30a6
|
UTSW |
17 |
74,726,586 (GRCm39) |
missense |
probably benign |
0.23 |
|
R9432:Slc30a6
|
UTSW |
17 |
74,719,699 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R9632:Slc30a6
|
UTSW |
17 |
74,730,059 (GRCm39) |
missense |
probably benign |
0.01 |
|
T0722:Slc30a6
|
UTSW |
17 |
74,719,319 (GRCm39) |
critical splice donor site |
probably null |
|
|
X0003:Slc30a6
|
UTSW |
17 |
74,719,319 (GRCm39) |
critical splice donor site |
probably null |
|
|
| Posted On |
2013-10-07 |
Incidental Mutation