Mutagenetix > Incidental Mutation

Incidental Mutation 'R0115:Arhgap20'

20726

Institutional Source

Beutler Lab

Gene Symbol

Arhgap20

Ensembl Gene

ENSMUSG00000053199

Gene Name

Rho GTPase activating protein 20

Synonyms

6530403F17Rik, A530023E23Rik

MMRRC Submission

038401-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.329) question?

Stock #

R0115 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

51676651-51765158 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 51750272 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 344 (I344N)

Ref Sequence

ENSEMBL: ENSMUSP00000120124 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065496] [ENSMUST00000130405]

AlphaFold

Q6IFT4

Predicted Effect

probably damaging
Transcript: ENSMUST00000065496
AA Change: I380N

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000065633
Gene: ENSMUSG00000053199
AA Change: I380N

Domain	Start	End	E-Value	Type
PH	86	187	3.31e-5	SMART
Pfam:RA	194	283	3.6e-15	PFAM
RhoGAP	374	548	1.27e-41	SMART
internal_repeat_1	655	779	9.97e-15	PROSPERO
internal_repeat_1	797	922	9.97e-15	PROSPERO
low complexity region	935	962	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125400

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130086

Predicted Effect

probably damaging
Transcript: ENSMUST00000130405
AA Change: I344N

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000120124
Gene: ENSMUSG00000053199
AA Change: I344N

Domain	Start	End	E-Value	Type
PH	50	151	3.31e-5	SMART
Pfam:RA	158	247	3.3e-14	PFAM
RhoGAP	338	512	1.27e-41	SMART
internal_repeat_1	619	743	7.07e-15	PROSPERO
internal_repeat_1	761	886	7.07e-15	PROSPERO
low complexity region	899	926	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142579

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149754

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152203

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 98.8%
3x: 97.7%
10x: 94.2%
20x: 86.0%

Validation Efficiency

98% (98/100)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an activator of RHO-type GTPases, transducing a signal from RAP1 to RHO and impacting neurite outgrowth. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921528I07Rik	A	G	9: 114,108,452 (GRCm39)		noncoding transcript	Het
Alas1	A	T	9: 106,115,451 (GRCm39)		probably null	Het
Arf5	A	G	6: 28,426,075 (GRCm39)	Y154C	probably damaging	Het
Arhgap30	A	C	1: 171,235,516 (GRCm39)	E630A	possibly damaging	Het
B4galt5	A	G	2: 167,151,154 (GRCm39)	L118P	probably damaging	Het
Bdp1	A	G	13: 100,177,962 (GRCm39)	I1969T	probably benign	Het
Bysl	C	T	17: 47,921,867 (GRCm39)	R77Q	probably benign	Het
Cap1	A	T	4: 122,756,868 (GRCm39)	H272Q	possibly damaging	Het
Ccdc146	T	C	5: 21,527,754 (GRCm39)	I187M	possibly damaging	Het
Ccdc192	G	A	18: 57,727,214 (GRCm39)		probably benign	Het
Cdhr18	A	G	14: 13,899,571 (GRCm38)	V117A	probably damaging	Het
Cdk13	C	A	13: 17,894,079 (GRCm39)	A1123S	probably damaging	Het
Ces5a	A	T	8: 94,228,811 (GRCm39)	M473K	probably damaging	Het
Chd8	A	G	14: 52,474,663 (GRCm39)	S123P	probably benign	Het
Cwc22	G	A	2: 77,738,455 (GRCm39)	A497V	probably damaging	Het
Cwh43	T	C	5: 73,575,370 (GRCm39)	S296P	probably damaging	Het
Cyp2c50	T	A	19: 40,080,837 (GRCm39)		probably benign	Het
Dlg1	C	A	16: 31,624,508 (GRCm39)	Y399*	probably null	Het
Drosha	A	T	15: 12,846,216 (GRCm39)	E92D	probably benign	Het
Fanca	C	T	8: 123,995,278 (GRCm39)	G1408D	probably benign	Het
Frem1	T	A	4: 82,854,406 (GRCm39)	D1621V	possibly damaging	Het
Frem2	G	A	3: 53,563,629 (GRCm39)	R293C	probably damaging	Het
Fut8	T	A	12: 77,495,334 (GRCm39)	V308D	probably damaging	Het
Glipr1	A	G	10: 111,829,446 (GRCm39)	I105T	probably benign	Het
Glmn	A	T	5: 107,708,800 (GRCm39)	S385T	probably benign	Het
Gon4l	T	A	3: 88,802,989 (GRCm39)	V1200D	probably damaging	Het
Gpc1	G	A	1: 92,785,221 (GRCm39)	D387N	probably damaging	Het
Gsdmc	A	G	15: 63,675,486 (GRCm39)	Y110H	probably damaging	Het
Gucy1b1	T	A	3: 81,941,698 (GRCm39)	H586L	probably benign	Het
Gucy2e	A	G	11: 69,127,458 (GRCm39)	L5P	unknown	Het
Hectd4	A	G	5: 121,433,569 (GRCm39)		probably benign	Het
Hmcn1	T	A	1: 150,684,398 (GRCm39)	I391F	possibly damaging	Het
Hsf4	A	T	8: 105,999,336 (GRCm39)		probably null	Het
I830077J02Rik	G	A	3: 105,833,886 (GRCm39)	T90M	probably damaging	Het
Ino80	A	T	2: 119,261,497 (GRCm39)	H722Q	probably damaging	Het
Kcnma1	C	A	14: 23,364,243 (GRCm39)	R980L	probably damaging	Het
Kif1a	A	G	1: 92,974,500 (GRCm39)		probably benign	Het
Klhdc7b	A	G	15: 89,272,724 (GRCm39)	H1202R	probably benign	Het
Lig3	A	G	11: 82,684,761 (GRCm39)	D559G	probably damaging	Het
Lyst	T	C	13: 13,852,537 (GRCm39)	V2179A	probably benign	Het
Mab21l4	A	T	1: 93,087,447 (GRCm39)	S135R	possibly damaging	Het
Mansc4	A	G	6: 146,976,725 (GRCm39)	I297T	possibly damaging	Het
Marchf6	A	T	15: 31,475,958 (GRCm39)	F633I	probably benign	Het
Marf1	C	T	16: 13,960,398 (GRCm39)	A549T	probably damaging	Het
Megf10	G	T	18: 57,392,874 (GRCm39)	V424L	possibly damaging	Het
Mfsd13a	C	T	19: 46,354,943 (GRCm39)	T40I	probably benign	Het
Mib2	A	G	4: 155,740,519 (GRCm39)		probably benign	Het
Mmut	C	T	17: 41,267,118 (GRCm39)	T564M	probably damaging	Het
Myh8	A	G	11: 67,197,090 (GRCm39)		probably benign	Het
Mypn	T	C	10: 63,028,159 (GRCm39)		probably benign	Het
Nf1	G	A	11: 79,359,702 (GRCm39)		probably null	Het
Notch3	T	A	17: 32,352,436 (GRCm39)	T1866S	possibly damaging	Het
Or1e30	A	G	11: 73,678,141 (GRCm39)	I126V	possibly damaging	Het
Or1o11	C	T	17: 37,756,670 (GRCm39)	A86V	probably benign	Het
Or4c102	A	T	2: 88,422,999 (GRCm39)	I284F	probably damaging	Het
Or4k51	T	A	2: 111,584,930 (GRCm39)	M112K	probably damaging	Het
Pkhd1	A	T	1: 20,420,714 (GRCm39)	I2464N	probably damaging	Het
Pkn1	A	G	8: 84,397,658 (GRCm39)	S817P	probably damaging	Het
Prkg2	A	T	5: 99,142,514 (GRCm39)		probably null	Het
Prl8a6	T	C	13: 27,617,084 (GRCm39)	D201G	probably benign	Het
Psmd1	C	T	1: 86,010,993 (GRCm39)	T356I	possibly damaging	Het
Ptk6	G	A	2: 180,844,320 (GRCm39)		probably benign	Het
Ptprn2	T	C	12: 117,175,466 (GRCm39)		probably benign	Het
Rbm42	G	A	7: 30,347,200 (GRCm39)	T106I	probably damaging	Het
Rims4	A	T	2: 163,706,040 (GRCm39)	V198E	probably damaging	Het
Ripk1	T	C	13: 34,193,733 (GRCm39)	S32P	probably damaging	Het
Rorc	T	C	3: 94,284,916 (GRCm39)		probably benign	Het
Rpl22l1	T	C	3: 28,860,685 (GRCm39)	F15L	probably damaging	Het
Slc6a20a	C	A	9: 123,507,823 (GRCm39)	A17S	possibly damaging	Het
Sorcs1	A	G	19: 50,624,891 (GRCm39)		probably benign	Het
Sp100	A	G	1: 85,577,852 (GRCm39)		probably benign	Het
Ssc5d	G	A	7: 4,930,880 (GRCm39)		probably benign	Het
Taf11	A	G	17: 28,126,635 (GRCm39)	L4P	probably benign	Het
Tm2d3	A	G	7: 65,345,082 (GRCm39)		probably benign	Het
Tmub2	T	C	11: 102,179,201 (GRCm39)		probably null	Het
Trim34a	T	A	7: 103,897,109 (GRCm39)	C58S	probably damaging	Het
Trpc3	T	C	3: 36,678,566 (GRCm39)	I840V	probably benign	Het
Trpm6	T	C	19: 18,807,316 (GRCm39)	V1020A	probably damaging	Het
Vmn1r214	T	A	13: 23,219,464 (GRCm39)	Y319*	probably null	Het
Vmn1r59	T	C	7: 5,457,115 (GRCm39)	N215S	probably benign	Het
Vmn2r74	T	C	7: 85,606,564 (GRCm39)	M261V	probably benign	Het
Vmn2r89	T	C	14: 51,693,577 (GRCm39)	F309S	probably damaging	Het
Wdr95	A	T	5: 149,487,855 (GRCm39)	D163V	probably damaging	Het
Xirp2	T	A	2: 67,340,253 (GRCm39)	F831L	possibly damaging	Het
Ythdc2	C	T	18: 44,974,490 (GRCm39)		probably benign	Het

Other mutations in Arhgap20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00815:Arhgap20	APN	9	51,760,713 (GRCm39)	missense	probably benign	0.00
IGL01542:Arhgap20	APN	9	51,750,187 (GRCm39)	missense	probably benign
IGL01815:Arhgap20	APN	9	51,757,468 (GRCm39)	missense	probably damaging	1.00
IGL01975:Arhgap20	APN	9	51,761,097 (GRCm39)	nonsense	probably null
IGL02041:Arhgap20	APN	9	51,757,490 (GRCm39)	missense	possibly damaging	0.92
IGL02557:Arhgap20	APN	9	51,732,573 (GRCm39)	missense	probably damaging	1.00
IGL02602:Arhgap20	APN	9	51,737,143 (GRCm39)	missense	probably damaging	1.00
IGL02741:Arhgap20	APN	9	51,759,945 (GRCm39)	missense	probably benign	0.17
IGL02792:Arhgap20	APN	9	51,761,218 (GRCm39)	missense	possibly damaging	0.89
IGL03166:Arhgap20	APN	9	51,761,077 (GRCm39)	missense	possibly damaging	0.63
P0047:Arhgap20	UTSW	9	51,760,536 (GRCm39)	missense	probably damaging	1.00
R0121:Arhgap20	UTSW	9	51,750,251 (GRCm39)	missense	possibly damaging	0.91
R0539:Arhgap20	UTSW	9	51,761,455 (GRCm39)	missense	probably benign	0.01
R0541:Arhgap20	UTSW	9	51,760,963 (GRCm39)	missense	probably damaging	1.00
R0551:Arhgap20	UTSW	9	51,737,125 (GRCm39)	splice site	probably benign
R0570:Arhgap20	UTSW	9	51,751,751 (GRCm39)	missense	possibly damaging	0.56
R0630:Arhgap20	UTSW	9	51,760,684 (GRCm39)	missense	probably damaging	0.98
R0931:Arhgap20	UTSW	9	51,728,041 (GRCm39)	missense	probably benign	0.30
R0992:Arhgap20	UTSW	9	51,728,086 (GRCm39)	missense	probably damaging	0.96
R1052:Arhgap20	UTSW	9	51,757,570 (GRCm39)	missense	probably damaging	0.98
R1779:Arhgap20	UTSW	9	51,761,215 (GRCm39)	missense	probably benign
R1839:Arhgap20	UTSW	9	51,760,626 (GRCm39)	missense	probably damaging	0.99
R1942:Arhgap20	UTSW	9	51,742,998 (GRCm39)	missense	probably benign	0.43
R2292:Arhgap20	UTSW	9	51,760,743 (GRCm39)	missense	possibly damaging	0.63
R3896:Arhgap20	UTSW	9	51,728,137 (GRCm39)	missense	probably damaging	0.96
R4109:Arhgap20	UTSW	9	51,727,985 (GRCm39)	missense	possibly damaging	0.60
R4166:Arhgap20	UTSW	9	51,738,135 (GRCm39)	critical splice acceptor site	probably null
R4631:Arhgap20	UTSW	9	51,751,653 (GRCm39)	intron	probably benign
R4692:Arhgap20	UTSW	9	51,697,088 (GRCm39)	missense	probably damaging	1.00
R5273:Arhgap20	UTSW	9	51,759,916 (GRCm39)	missense	probably damaging	1.00
R5505:Arhgap20	UTSW	9	51,750,248 (GRCm39)	missense	probably damaging	0.98
R5743:Arhgap20	UTSW	9	51,728,027 (GRCm39)	missense	probably benign	0.17
R5847:Arhgap20	UTSW	9	51,736,276 (GRCm39)	intron	probably benign
R6006:Arhgap20	UTSW	9	51,761,426 (GRCm39)	missense	probably benign
R6112:Arhgap20	UTSW	9	51,740,684 (GRCm39)	missense	probably damaging	1.00
R6355:Arhgap20	UTSW	9	51,755,020 (GRCm39)	missense	probably damaging	1.00
R6576:Arhgap20	UTSW	9	51,760,578 (GRCm39)	missense	probably benign	0.03
R6801:Arhgap20	UTSW	9	51,759,892 (GRCm39)	missense	probably damaging	1.00
R7130:Arhgap20	UTSW	9	51,761,047 (GRCm39)	missense	probably damaging	0.98
R7318:Arhgap20	UTSW	9	51,751,802 (GRCm39)	missense	probably benign
R7347:Arhgap20	UTSW	9	51,760,335 (GRCm39)	missense	probably benign	0.07
R7500:Arhgap20	UTSW	9	51,751,802 (GRCm39)	missense	probably benign
R7598:Arhgap20	UTSW	9	51,761,090 (GRCm39)	missense	possibly damaging	0.95
R7677:Arhgap20	UTSW	9	51,751,698 (GRCm39)	missense	probably damaging	0.97
R7725:Arhgap20	UTSW	9	51,743,050 (GRCm39)	missense	possibly damaging	0.80
R8086:Arhgap20	UTSW	9	51,760,563 (GRCm39)	missense	probably benign	0.00
R8122:Arhgap20	UTSW	9	51,761,293 (GRCm39)	missense	probably damaging	0.99
R8125:Arhgap20	UTSW	9	51,738,209 (GRCm39)	missense	probably damaging	0.99
R8196:Arhgap20	UTSW	9	51,760,277 (GRCm39)	missense	possibly damaging	0.94
R8783:Arhgap20	UTSW	9	51,727,967 (GRCm39)	splice site	probably benign
R8972:Arhgap20	UTSW	9	51,760,311 (GRCm39)	missense	probably benign	0.03
R9027:Arhgap20	UTSW	9	51,754,977 (GRCm39)	missense	probably damaging	1.00
R9427:Arhgap20	UTSW	9	51,754,991 (GRCm39)	missense	probably damaging	1.00
R9564:Arhgap20	UTSW	9	51,761,413 (GRCm39)	frame shift	probably null
R9741:Arhgap20	UTSW	9	51,760,730 (GRCm39)	nonsense	probably null
Z1177:Arhgap20	UTSW	9	51,736,224 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AAGGGACCTCCATCTGCACTTCTG -3'
(R):5'- GGGATCGTCTGATGACATAGCACAC -3'

Sequencing Primer
(F):5'- TTCTTAGATTCCAGCCAGAAGAC -3'
(R):5'- CACCAATTTGGGTGGGTCAAC -3'

Posted On

2013-04-11