Incidental Mutation 'R3403:Tma16'
| ID |
259255 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tma16
|
| Ensembl Gene |
ENSMUSG00000025591 |
| Gene Name |
translation machinery associated 16 |
| Synonyms |
1810029B16Rik |
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.947)
|
| Stock # |
R3403 (G1)
|
| Quality Score |
218 |
|
Status
|
Not validated
|
| Chromosome |
8 |
| Chromosomal Location |
66928995-66939182 bp(-) (GRCm39) |
| Type of Mutation |
critical splice acceptor site |
| DNA Base Change (assembly) |
C to T
at 66936823 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000026681
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026681]
[ENSMUST00000143972]
|
| AlphaFold |
Q9CR02 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000026681
|
| SMART Domains |
Protein: ENSMUSP00000026681
Gene: ENSMUSG00000025591
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF2962
|
10 |
162 |
1.6e-48 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000143972
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145787
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000213036
|
| Meta Mutation Damage Score |
0.9588 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.9%
- 20x: 93.4%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 19 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acsl3 |
T |
C |
1: 78,673,839 (GRCm39) |
V333A |
probably damaging |
Het |
| Afdn |
C |
T |
17: 14,104,176 (GRCm39) |
R1156C |
probably damaging |
Het |
| Asic3 |
A |
G |
5: 24,621,985 (GRCm39) |
E415G |
probably damaging |
Het |
| Cactin |
G |
A |
10: 81,161,709 (GRCm39) |
R747H |
probably benign |
Het |
| Calcr |
T |
A |
6: 3,687,604 (GRCm39) |
I465F |
probably benign |
Het |
| Dennd4c |
C |
T |
4: 86,692,780 (GRCm39) |
P97S |
probably damaging |
Het |
| Dnah3 |
A |
G |
7: 119,566,879 (GRCm39) |
V2449A |
probably benign |
Het |
| Dsg1c |
A |
G |
18: 20,403,407 (GRCm39) |
N189D |
probably damaging |
Het |
| Dysf |
G |
A |
6: 84,163,491 (GRCm39) |
|
probably null |
Het |
| Ndrg3 |
C |
T |
2: 156,790,208 (GRCm39) |
V92M |
probably damaging |
Het |
| Or5ac20 |
G |
C |
16: 59,104,475 (GRCm39) |
N128K |
probably benign |
Het |
| Pacs2 |
T |
C |
12: 113,014,570 (GRCm39) |
S214P |
probably damaging |
Het |
| Rad51 |
T |
A |
2: 118,951,025 (GRCm39) |
|
probably benign |
Het |
| Rtn4 |
T |
C |
11: 29,657,690 (GRCm39) |
S499P |
probably benign |
Het |
| Slc6a6 |
A |
G |
6: 91,703,110 (GRCm39) |
H161R |
probably benign |
Het |
| Tmem74 |
C |
T |
15: 43,730,417 (GRCm39) |
V209M |
probably damaging |
Het |
| Unc80 |
A |
T |
1: 66,549,845 (GRCm39) |
E701V |
probably damaging |
Het |
| Upk3a |
T |
C |
15: 84,902,384 (GRCm39) |
|
probably null |
Het |
| Zhx1 |
T |
C |
15: 57,917,745 (GRCm39) |
E167G |
probably benign |
Het |
|
| Other mutations in Tma16 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00233:Tma16
|
APN |
8 |
66,933,097 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01321:Tma16
|
APN |
8 |
66,929,512 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02022:Tma16
|
APN |
8 |
66,939,062 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0064:Tma16
|
UTSW |
8 |
66,929,457 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R3401:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R3402:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4399:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4402:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4421:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4453:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4493:Tma16
|
UTSW |
8 |
66,936,823 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R4856:Tma16
|
UTSW |
8 |
66,934,129 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4886:Tma16
|
UTSW |
8 |
66,934,129 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5527:Tma16
|
UTSW |
8 |
66,936,776 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R6312:Tma16
|
UTSW |
8 |
66,934,118 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8437:Tma16
|
UTSW |
8 |
66,929,448 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R9229:Tma16
|
UTSW |
8 |
66,936,779 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- TAGATGCATAAAGGCGCTTTCC -3'
(R):5'- CAGAACTACTTTAAGCTGGCATGG -3'
Sequencing Primer
(F):5'- ATAAAGGCGCTTTCCCCAGTG -3'
(R):5'- TAAGCTGGCATGGCTGAGTCAC -3'
|
| Posted On |
2015-01-23 |
Incidental Mutation