Mutagenetix > Incidental Mutation

Incidental Mutation 'R0004:Scaf1'

32388

Institutional Source

Beutler Lab

Gene Symbol

Scaf1

Ensembl Gene

ENSMUSG00000038406

Gene Name

SR-related CTD-associated factor 1

Synonyms

MMRRC Submission

038300-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.908) question?

Stock #

R0004 (G1)

Quality Score

175

Status

Validated (trace)

Chromosome

Chromosomal Location

44652372-44665537 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to C at 44657094 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000003284 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003284] [ENSMUST00000085383] [ENSMUST00000211735]

AlphaFold

Q5U4C3

Predicted Effect

probably benign
Transcript: ENSMUST00000003284

SMART Domains

Protein: ENSMUSP00000003284
Gene: ENSMUSG00000003184

Domain	Start	End	E-Value	Type
IRF	1	112	6.92e-50	SMART
IRF-3	195	373	4.87e-73	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000085383
AA Change: H595R

SMART Domains

Protein: ENSMUSP00000082501
Gene: ENSMUSG00000038406
AA Change: H595R

Domain	Start	End	E-Value	Type
low complexity region	12	27	N/A	INTRINSIC
low complexity region	59	78	N/A	INTRINSIC
low complexity region	83	95	N/A	INTRINSIC
low complexity region	185	224	N/A	INTRINSIC
coiled coil region	269	295	N/A	INTRINSIC
low complexity region	367	379	N/A	INTRINSIC
low complexity region	382	396	N/A	INTRINSIC
low complexity region	411	435	N/A	INTRINSIC
low complexity region	488	511	N/A	INTRINSIC
low complexity region	534	618	N/A	INTRINSIC
low complexity region	631	641	N/A	INTRINSIC
low complexity region	669	685	N/A	INTRINSIC
low complexity region	703	726	N/A	INTRINSIC
low complexity region	730	739	N/A	INTRINSIC
low complexity region	752	775	N/A	INTRINSIC
Blast:IG_like	776	833	6e-6	BLAST
low complexity region	843	873	N/A	INTRINSIC
low complexity region	876	888	N/A	INTRINSIC
low complexity region	917	937	N/A	INTRINSIC
coiled coil region	963	983	N/A	INTRINSIC
low complexity region	1025	1037	N/A	INTRINSIC
low complexity region	1098	1128	N/A	INTRINSIC
low complexity region	1136	1146	N/A	INTRINSIC
Blast:IG_like	1151	1194	2e-16	BLAST
low complexity region	1225	1256	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000117282
AA Change: H595R

SMART Domains

Protein: ENSMUSP00000114117
Gene: ENSMUSG00000038406
AA Change: H595R

Domain	Start	End	E-Value	Type
low complexity region	12	27	N/A	INTRINSIC
low complexity region	59	78	N/A	INTRINSIC
low complexity region	83	95	N/A	INTRINSIC
low complexity region	185	224	N/A	INTRINSIC
coiled coil region	269	295	N/A	INTRINSIC
low complexity region	367	379	N/A	INTRINSIC
low complexity region	382	396	N/A	INTRINSIC
low complexity region	411	435	N/A	INTRINSIC
low complexity region	488	511	N/A	INTRINSIC
low complexity region	534	618	N/A	INTRINSIC
low complexity region	631	641	N/A	INTRINSIC
low complexity region	669	685	N/A	INTRINSIC
low complexity region	703	726	N/A	INTRINSIC
low complexity region	730	739	N/A	INTRINSIC
low complexity region	752	775	N/A	INTRINSIC
Blast:IG_like	776	833	6e-6	BLAST
low complexity region	843	873	N/A	INTRINSIC
low complexity region	876	888	N/A	INTRINSIC
low complexity region	917	937	N/A	INTRINSIC
coiled coil region	963	983	N/A	INTRINSIC
low complexity region	1025	1037	N/A	INTRINSIC
low complexity region	1098	1128	N/A	INTRINSIC
low complexity region	1136	1146	N/A	INTRINSIC
Blast:IG_like	1151	1194	2e-16	BLAST
low complexity region	1225	1256	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148227
AA Change: T1414A

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183606

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209989

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210056

Predicted Effect

unknown
Transcript: ENSMUST00000211735
AA Change: H595R

Meta Mutation Damage Score

0.0893

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 95.1%

Validation Efficiency

98% (63/64)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adal	T	C	2: 120,982,966 (GRCm39)	I86T	probably damaging	Het
Aff3	T	C	1: 38,308,807 (GRCm39)	D376G	possibly damaging	Het
Akap11	A	T	14: 78,752,380 (GRCm39)	H164Q	possibly damaging	Het
Akap12	A	T	10: 4,303,220 (GRCm39)	D10V	probably damaging	Het
Arhgap32	T	C	9: 32,063,294 (GRCm39)	V101A	probably damaging	Het
Atm	A	T	9: 53,364,828 (GRCm39)		probably benign	Het
Ccdc18	A	G	5: 108,309,566 (GRCm39)	D387G	possibly damaging	Het
Ccdc38	A	T	10: 93,409,964 (GRCm39)	Q261L	probably damaging	Het
Cd180	T	G	13: 102,839,216 (GRCm39)	V33G	probably benign	Het
Cd207	G	A	6: 83,651,230 (GRCm39)	Q242*	probably null	Het
Cnp	T	C	11: 100,467,633 (GRCm39)	F192S	probably damaging	Het
Colec10	G	T	15: 54,274,271 (GRCm39)	R33L	possibly damaging	Het
Csn1s1	A	T	5: 87,819,390 (GRCm39)	M16L	probably benign	Het
Dnah10	A	T	5: 124,803,966 (GRCm39)	M98L	probably benign	Het
Dnah17	T	C	11: 117,950,918 (GRCm39)	I2902V	possibly damaging	Het
Dtnb	A	G	12: 3,646,635 (GRCm39)		probably benign	Het
Epha5	T	C	5: 84,479,701 (GRCm39)	Y101C	probably damaging	Het
Ephb2	T	A	4: 136,384,835 (GRCm39)	M860L	probably damaging	Het
Fbxw18	T	C	9: 109,530,381 (GRCm39)	T77A	probably damaging	Het
Fgfbp3	A	G	19: 36,896,082 (GRCm39)	S179P	possibly damaging	Het
Foxp2	A	G	6: 15,197,095 (GRCm39)	T45A	possibly damaging	Het
Gckr	A	T	5: 31,454,933 (GRCm39)		probably benign	Het
Glce	T	A	9: 61,975,861 (GRCm39)	Q213L	probably damaging	Het
Gm1965	A	C	6: 89,123,469 (GRCm39)	H84P	unknown	Het
Hbegf	A	G	18: 36,640,559 (GRCm39)	V166A	probably damaging	Het
Helb	G	T	10: 119,944,886 (GRCm39)	H217N	probably damaging	Het
Ino80	G	A	2: 119,213,441 (GRCm39)	R1249C	probably damaging	Het
Kansl2	A	G	15: 98,418,257 (GRCm39)	L392P	probably damaging	Het
Klra1	A	T	6: 130,349,836 (GRCm39)	Y201N	probably damaging	Het
Klra3	A	G	6: 130,300,650 (GRCm39)	S240P	probably damaging	Het
Liph	T	A	16: 21,802,944 (GRCm39)	R42*	probably null	Het
Lrp1	A	T	10: 127,377,694 (GRCm39)		probably null	Het
Luc7l2	A	T	6: 38,566,169 (GRCm39)	K52M	probably damaging	Het
Mecom	G	A	3: 30,034,060 (GRCm39)	P215S	probably damaging	Het
Myo1g	T	A	11: 6,465,901 (GRCm39)	T395S	probably damaging	Het
Ndst4	T	A	3: 125,364,475 (GRCm39)	M384K	probably benign	Het
Ndufb2	C	T	6: 39,573,438 (GRCm39)	T51I	possibly damaging	Het
Nell1	C	A	7: 50,210,507 (GRCm39)		probably benign	Het
Or51k1	A	T	7: 103,661,638 (GRCm39)	N90K	probably benign	Het
Oxr1	G	A	15: 41,683,936 (GRCm39)	S434N	possibly damaging	Het
Pcdhac2	T	A	18: 37,278,290 (GRCm39)	S423R	probably benign	Het
Pcdhb10	T	A	18: 37,545,012 (GRCm39)	D29E	probably benign	Het
Pde10a	A	G	17: 9,200,408 (GRCm39)	T1053A	probably benign	Het
Pkdrej	T	A	15: 85,702,384 (GRCm39)	H1184L	probably damaging	Het
Prkaa2	C	T	4: 104,904,288 (GRCm39)	R263Q	probably null	Het
Prmt9	A	G	8: 78,282,411 (GRCm39)	I103V	possibly damaging	Het
Rbm15b	T	C	9: 106,762,135 (GRCm39)	T678A	probably benign	Het
Ryr2	T	C	13: 11,680,805 (GRCm39)	Y3180C	probably benign	Het
Scn7a	T	A	2: 66,518,139 (GRCm39)	N1024I	possibly damaging	Het
Sec23b	T	C	2: 144,406,482 (GRCm39)		probably benign	Het
Sf1	C	A	19: 6,424,221 (GRCm39)	P417Q	probably damaging	Het
Slc4a3	A	T	1: 75,533,653 (GRCm39)		probably benign	Het
Stk32a	T	C	18: 43,438,121 (GRCm39)	W207R	probably damaging	Het
Syne1	A	T	10: 5,393,132 (GRCm39)		probably benign	Het
Tecta	A	T	9: 42,256,774 (GRCm39)	V1634E	possibly damaging	Het
Tenm2	A	G	11: 35,914,184 (GRCm39)	F2450S	probably damaging	Het
Tgfb1	T	C	7: 25,391,791 (GRCm39)		probably benign	Het
Tpgs2	A	G	18: 25,291,295 (GRCm39)		probably benign	Het
Washc5	A	G	15: 59,239,316 (GRCm39)	M149T	probably damaging	Het
Wrn	A	T	8: 33,807,588 (GRCm39)	V290D	probably damaging	Het
Zbtb41	A	G	1: 139,370,626 (GRCm39)	T688A	possibly damaging	Het
Zfp560	C	T	9: 20,259,263 (GRCm39)	C533Y	probably damaging	Het
Zfp791	G	A	8: 85,837,495 (GRCm39)	A123V	probably benign	Het

Other mutations in Scaf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02146:Scaf1	APN	7	44,662,934 (GRCm39)	missense	probably damaging	1.00
IGL02644:Scaf1	APN	7	44,655,357 (GRCm39)	splice site	probably benign
IGL02660:Scaf1	APN	7	44,661,542 (GRCm39)	splice site	probably benign
R0326:Scaf1	UTSW	7	44,658,175 (GRCm39)	missense	probably damaging	1.00
R1395:Scaf1	UTSW	7	44,657,721 (GRCm39)	missense	probably damaging	0.99
R1799:Scaf1	UTSW	7	44,657,443 (GRCm39)	missense	probably damaging	0.97
R3037:Scaf1	UTSW	7	44,656,771 (GRCm39)	unclassified	probably benign
R4044:Scaf1	UTSW	7	44,655,798 (GRCm39)	unclassified	probably benign
R4808:Scaf1	UTSW	7	44,658,063 (GRCm39)	missense	probably damaging	0.99
R4871:Scaf1	UTSW	7	44,655,303 (GRCm39)	unclassified	probably benign
R4905:Scaf1	UTSW	7	44,662,129 (GRCm39)	missense	probably damaging	1.00
R5214:Scaf1	UTSW	7	44,652,662 (GRCm39)	unclassified	probably benign
R5602:Scaf1	UTSW	7	44,657,007 (GRCm39)	unclassified	probably benign
R5748:Scaf1	UTSW	7	44,662,230 (GRCm39)	splice site	probably null
R5907:Scaf1	UTSW	7	44,663,016 (GRCm39)	splice site	probably benign
R6193:Scaf1	UTSW	7	44,656,204 (GRCm39)	unclassified	probably benign
R6207:Scaf1	UTSW	7	44,657,047 (GRCm39)	unclassified	probably benign
R6948:Scaf1	UTSW	7	44,662,971 (GRCm39)	nonsense	probably null
R6969:Scaf1	UTSW	7	44,657,253 (GRCm39)	unclassified	probably benign
R7039:Scaf1	UTSW	7	44,657,850 (GRCm39)	missense	probably damaging	1.00
R7179:Scaf1	UTSW	7	44,657,167 (GRCm39)	missense	unknown
R7356:Scaf1	UTSW	7	44,657,208 (GRCm39)	missense	unknown
R7480:Scaf1	UTSW	7	44,657,073 (GRCm39)	missense	unknown
R7632:Scaf1	UTSW	7	44,656,503 (GRCm39)	missense	unknown
R7971:Scaf1	UTSW	7	44,652,965 (GRCm39)	missense	unknown
R8354:Scaf1	UTSW	7	44,657,251 (GRCm39)	unclassified	probably benign
R8770:Scaf1	UTSW	7	44,656,129 (GRCm39)	missense	unknown
R9414:Scaf1	UTSW	7	44,652,716 (GRCm39)	missense	unknown
R9551:Scaf1	UTSW	7	44,658,351 (GRCm39)	missense	probably damaging	1.00
R9552:Scaf1	UTSW	7	44,658,351 (GRCm39)	missense	probably damaging	1.00
R9749:Scaf1	UTSW	7	44,656,576 (GRCm39)	missense	unknown
X0020:Scaf1	UTSW	7	44,654,953 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- TGGTCCGTTTGATGGCGAACAG -3'
(R):5'- GGGAAGCTAAGAAGCACCGTTCAC -3'

Sequencing Primer
(F):5'- TGATGGCGAACAGGTCGTG -3'
(R):5'- AGCTTGGTTCACACTCCACG -3'

Posted On

2013-05-09