Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02902:Irx1'

363649

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Irx1

Ensembl Gene

ENSMUSG00000060969

Gene Name

Iroquois homeobox 1

Synonyms

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02902

Quality Score

Status

Chromosome

Chromosomal Location

72106351-72111842 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 72107974 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 236 (R236H)

Ref Sequence

ENSEMBL: ENSMUSP00000076562 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077337] [ENSMUST00000223379]

AlphaFold

P81068

Predicted Effect

probably benign
Transcript: ENSMUST00000077337
AA Change: R236H

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000076562
Gene: ENSMUSG00000060969
AA Change: R236H

Domain	Start	End	E-Value	Type
low complexity region	49	56	N/A	INTRINSIC
low complexity region	64	74	N/A	INTRINSIC
low complexity region	105	120	N/A	INTRINSIC
HOX	128	192	6.93e-12	SMART
low complexity region	218	235	N/A	INTRINSIC
low complexity region	249	263	N/A	INTRINSIC
IRO	309	326	1.14e-5	SMART
low complexity region	396	422	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222586

Predicted Effect

probably benign
Transcript: ENSMUST00000223379

Predicted Effect

unknown
Transcript: ENSMUST00000223460
AA Change: R150H

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Iroquois homeobox protein family. Homeobox genes in this family are involved in pattern formation in the embryo. The gene product has been identified as a tumor suppressor in gastric (PMID: 21602894, 20440264) and head and neck cancers (PMID: 18559491). A pseudogene of this gene is located on chromosome 13. [provided by RefSeq, Dec 2011]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810459M11Rik	G	T	1: 85,974,087 (GRCm39)	V135F	possibly damaging	Het
Aatk	T	C	11: 119,902,603 (GRCm39)	T541A	probably benign	Het
Abcc1	T	C	16: 14,240,991 (GRCm39)	L516P	probably damaging	Het
Actl6a	T	A	3: 32,776,791 (GRCm39)	V350E	possibly damaging	Het
Afm	A	G	5: 90,674,222 (GRCm39)	K245E	possibly damaging	Het
Agr3	T	C	12: 35,996,915 (GRCm39)	V63A	probably damaging	Het
Arhgef28	A	T	13: 98,083,383 (GRCm39)	M1162K	probably damaging	Het
Casq2	T	A	3: 101,994,113 (GRCm39)	C53*	probably null	Het
Ccdc181	T	C	1: 164,107,470 (GRCm39)	V51A	probably benign	Het
Cd101	A	G	3: 100,926,310 (GRCm39)		probably benign	Het
Csdc2	T	C	15: 81,832,801 (GRCm39)	V69A	probably benign	Het
Cyp2c23	A	T	19: 44,009,997 (GRCm39)		probably benign	Het
Dnph1	A	G	17: 46,809,427 (GRCm39)		probably benign	Het
Egf	T	C	3: 129,474,796 (GRCm39)	T1124A	probably benign	Het
Gpr45	A	G	1: 43,072,371 (GRCm39)	E338G	possibly damaging	Het
Grb14	A	C	2: 64,768,762 (GRCm39)	L98R	probably damaging	Het
Gucy1a1	T	C	3: 82,026,224 (GRCm39)	S77G	possibly damaging	Het
Helb	A	G	10: 119,925,390 (GRCm39)	S996P	probably benign	Het
Huwe1	A	G	X: 150,669,762 (GRCm39)	E1405G	probably damaging	Het
Ifi47	T	C	11: 48,986,617 (GRCm39)	I128T	probably benign	Het
Ift140	T	A	17: 25,309,736 (GRCm39)	Y1089N	probably damaging	Het
Ift56	A	C	6: 38,402,097 (GRCm39)	S530R	probably benign	Het
Il1r1	A	T	1: 40,341,569 (GRCm39)	H324L	probably benign	Het
Itpr3	T	C	17: 27,323,530 (GRCm39)	V1185A	probably benign	Het
Kif19a	T	C	11: 114,676,396 (GRCm39)	V450A	possibly damaging	Het
Krtap21-1	G	T	16: 89,200,446 (GRCm39)	Y65*	probably null	Het
Ltn1	A	T	16: 87,176,693 (GRCm39)	N1704K	possibly damaging	Het
Med1	T	C	11: 98,047,335 (GRCm39)		probably benign	Het
Meis2	T	A	2: 115,893,804 (GRCm39)	H36L	probably damaging	Het
Mier2	T	C	10: 79,385,456 (GRCm39)	N124S	probably damaging	Het
Mmp20	A	G	9: 7,654,171 (GRCm39)		probably null	Het
Muc4	A	G	16: 32,569,212 (GRCm39)	T91A	possibly damaging	Het
Myo3b	T	A	2: 70,119,745 (GRCm39)	V935E	probably benign	Het
Ndufa7	T	C	17: 34,048,632 (GRCm39)		probably benign	Het
Nipal1	A	G	5: 72,825,405 (GRCm39)	E366G	possibly damaging	Het
Nobox	A	T	6: 43,282,617 (GRCm39)	N263K	probably benign	Het
Notch2	A	G	3: 98,018,890 (GRCm39)	D684G	probably damaging	Het
Odr4	C	A	1: 150,260,179 (GRCm39)		probably null	Het
Or2t1	A	G	14: 14,328,789 (GRCm38)	H226R	probably benign	Het
Or4c12b	T	A	2: 89,647,508 (GRCm39)	Y273*	probably null	Het
Or5p69	C	A	7: 107,967,336 (GRCm39)	T213K	probably damaging	Het
Or5w13	T	C	2: 87,523,344 (GRCm39)	N294S	probably damaging	Het
Or6aa1	T	C	7: 86,043,743 (GRCm39)		probably benign	Het
Plau	A	C	14: 20,889,965 (GRCm39)	D270A	possibly damaging	Het
Pof1b	T	C	X: 111,558,809 (GRCm39)		probably null	Het
Pramel23	A	G	4: 143,424,913 (GRCm39)	C177R	probably damaging	Het
Prtn3	A	T	10: 79,717,767 (GRCm39)		probably null	Het
Ptges3	T	A	10: 127,904,616 (GRCm39)	D26E	probably benign	Het
Pxmp2	T	C	5: 110,429,160 (GRCm39)	E99G	probably benign	Het
Rasgef1a	A	G	6: 118,060,068 (GRCm39)	R106G	probably benign	Het
Rnf208	T	C	2: 25,133,774 (GRCm39)	V156A	probably benign	Het
Rps6ka1	A	T	4: 133,599,292 (GRCm39)	I45N	possibly damaging	Het
Rps6ka4	C	T	19: 6,809,623 (GRCm39)		probably null	Het
Rsbn1	G	T	3: 103,860,972 (GRCm39)	C466F	possibly damaging	Het
Shkbp1	A	T	7: 27,042,141 (GRCm39)	C605S	probably damaging	Het
Slc2a10	G	A	2: 165,360,142 (GRCm39)	D531N	probably benign	Het
Sox13	A	G	1: 133,317,204 (GRCm39)	L143P	probably damaging	Het
Stx2	C	T	5: 129,069,285 (GRCm39)	R142Q	probably damaging	Het
Tanc1	T	A	2: 59,623,431 (GRCm39)		probably benign	Het
Tubgcp5	C	T	7: 55,456,355 (GRCm39)	Q316*	probably null	Het
Ubc	A	G	5: 125,463,293 (GRCm39)	V678A	probably benign	Het
Unc5d	G	A	8: 29,365,634 (GRCm39)	T117I	probably damaging	Het
Vmn2r4	T	C	3: 64,314,337 (GRCm39)	I126V	probably benign	Het
Zfp410	T	A	12: 84,378,594 (GRCm39)		probably null	Het

Other mutations in Irx1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00961:Irx1	APN	13	72,108,076 (GRCm39)	missense	probably damaging	1.00
IGL01085:Irx1	APN	13	72,107,816 (GRCm39)	missense	probably benign
R0558:Irx1	UTSW	13	72,107,747 (GRCm39)	missense	probably benign	0.10
R2350:Irx1	UTSW	13	72,108,167 (GRCm39)	missense	probably damaging	0.98
R2507:Irx1	UTSW	13	72,107,939 (GRCm39)	missense	probably damaging	0.97
R3085:Irx1	UTSW	13	72,111,411 (GRCm39)	missense	probably damaging	0.98
R3857:Irx1	UTSW	13	72,111,577 (GRCm39)	missense	possibly damaging	0.86
R4466:Irx1	UTSW	13	72,108,101 (GRCm39)	missense	probably damaging	1.00
R4599:Irx1	UTSW	13	72,108,232 (GRCm39)	missense	probably damaging	0.99
R4978:Irx1	UTSW	13	72,111,604 (GRCm39)	missense	possibly damaging	0.73
R6296:Irx1	UTSW	13	72,107,787 (GRCm39)	missense	probably damaging	0.98
R7532:Irx1	UTSW	13	72,108,314 (GRCm39)	missense	possibly damaging	0.53
R7721:Irx1	UTSW	13	72,108,176 (GRCm39)	missense	probably benign	0.37
R7810:Irx1	UTSW	13	72,107,917 (GRCm39)	missense	probably benign
R8773:Irx1	UTSW	13	72,107,635 (GRCm39)	missense	probably damaging	1.00
R9020:Irx1	UTSW	13	72,111,548 (GRCm39)	nonsense	probably null
R9311:Irx1	UTSW	13	72,107,416 (GRCm39)	missense	probably benign
R9666:Irx1	UTSW	13	72,111,588 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-12-18