Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02992:Smu1'

407004

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Smu1

Ensembl Gene

ENSMUSG00000028409

Gene Name

smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)

Synonyms

SMU-1, 2600001O03Rik, 2610203K23Rik

Accession Numbers

Essential gene?

Probably essential (E-score: 0.965) question?

Stock #

IGL02992

Quality Score

Status

Chromosome

Chromosomal Location

40736542-40757923 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 40739550 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 420 (N420I)

Ref Sequence

ENSEMBL: ENSMUSP00000030117 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030117] [ENSMUST00000030118] [ENSMUST00000164233]

AlphaFold

Q3UKJ7

Predicted Effect

probably damaging
Transcript: ENSMUST00000030117
AA Change: N420I

PolyPhen 2 Score 0.969 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000030117
Gene: ENSMUSG00000028409
AA Change: N420I

Domain	Start	End	E-Value	Type
LisH	6	38	9.95e-7	SMART
CTLH	40	92	2.32e-7	SMART
WD40	202	242	9.02e-7	SMART
WD40	253	292	3.81e-5	SMART
WD40	295	335	5.26e-8	SMART
WD40	338	377	4.4e-10	SMART
WD40	380	426	1.03e1	SMART
WD40	428	470	2.97e0	SMART
WD40	473	512	9.52e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000030118

SMART Domains

Protein: ENSMUSP00000030118
Gene: ENSMUSG00000028410

Domain	Start	End	E-Value	Type
DnaJ	5	60	4.2e-30	SMART
low complexity region	66	82	N/A	INTRINSIC
low complexity region	93	104	N/A	INTRINSIC
Pfam:DnaJ_CXXCXGXG	134	200	5.7e-16	PFAM
Pfam:CTDII	257	340	1.5e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130503

Predicted Effect

probably benign
Transcript: ENSMUST00000164233

SMART Domains

Protein: ENSMUSP00000129730
Gene: ENSMUSG00000028410

Domain	Start	End	E-Value	Type
DnaJ	5	60	4.2e-30	SMART
low complexity region	66	82	N/A	INTRINSIC
low complexity region	93	104	N/A	INTRINSIC
Pfam:DnaJ_C	107	329	5.1e-35	PFAM
Pfam:DnaJ_CXXCXGXG	134	200	6e-17	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 121,921,935 (GRCm39)	K1164E	probably damaging	Het
Arhgap42	G	A	9: 8,998,249 (GRCm39)		probably benign	Het
Arhgef12	T	C	9: 42,910,373 (GRCm39)	D612G	probably damaging	Het
Cpne3	T	C	4: 19,532,486 (GRCm39)	D309G	probably benign	Het
Daw1	T	C	1: 83,174,934 (GRCm39)		probably benign	Het
Daxx	T	A	17: 34,130,722 (GRCm39)	C246S	probably damaging	Het
Dpp7	T	C	2: 25,244,589 (GRCm39)	D264G	possibly damaging	Het
Dync2h1	T	A	9: 7,137,074 (GRCm39)	H1472L	probably benign	Het
Fastkd2	T	C	1: 63,777,083 (GRCm39)		probably benign	Het
Fcrl2	T	G	3: 87,166,773 (GRCm39)	R73S	probably damaging	Het
Gatb	A	G	3: 85,526,223 (GRCm39)	D367G	probably damaging	Het
Gm20547	T	A	17: 35,076,095 (GRCm39)	E654V	probably damaging	Het
Gm839	T	A	6: 89,189,509 (GRCm39)		noncoding transcript	Het
Gtf2ird2	A	T	5: 134,246,456 (GRCm39)	M905L	possibly damaging	Het
Hoxb2	A	T	11: 96,243,910 (GRCm39)	I174F	probably damaging	Het
Hrh3	A	G	2: 179,742,608 (GRCm39)	V308A	probably benign	Het
Ints9	A	G	14: 65,217,613 (GRCm39)	K47E	probably benign	Het
Irak3	A	T	10: 120,018,566 (GRCm39)	Y61N	probably damaging	Het
Itpr1	A	G	6: 108,358,276 (GRCm39)	E614G	probably damaging	Het
Lgals3	A	T	14: 47,622,982 (GRCm39)	I214L	probably benign	Het
Msh4	G	T	3: 153,577,962 (GRCm39)	T444K	possibly damaging	Het
Myh7b	C	A	2: 155,463,330 (GRCm39)	Q521K	probably damaging	Het
Naip5	T	A	13: 100,359,536 (GRCm39)	I567F	probably damaging	Het
Nf1	A	G	11: 79,325,759 (GRCm39)		probably benign	Het
Nlrc3	C	T	16: 3,771,887 (GRCm39)		probably benign	Het
Nlrc5	A	C	8: 95,233,201 (GRCm39)	E1353A	possibly damaging	Het
Nr1h3	T	A	2: 91,020,911 (GRCm39)	I260F	probably damaging	Het
Pcnx1	G	A	12: 82,010,894 (GRCm39)	R1211Q	probably damaging	Het
Pde10a	A	G	17: 9,168,293 (GRCm39)	K605E	probably damaging	Het
Pdzd2	T	C	15: 12,382,708 (GRCm39)	E1215G	possibly damaging	Het
Pex12	A	G	11: 83,188,753 (GRCm39)	S81P	probably damaging	Het
Pik3c2b	C	A	1: 132,994,718 (GRCm39)	Y227*	probably null	Het
Ppef2	C	T	5: 92,383,759 (GRCm39)	W450*	probably null	Het
Prkg2	T	G	5: 99,172,365 (GRCm39)	S117R	probably benign	Het
Prl3d2	A	T	13: 27,311,266 (GRCm39)	E179D	probably benign	Het
Relch	T	A	1: 105,647,189 (GRCm39)	L684M	possibly damaging	Het
Rxfp2	T	C	5: 149,975,021 (GRCm39)	V210A	probably benign	Het
Scn10a	T	C	9: 119,438,626 (GRCm39)	T1748A	possibly damaging	Het
Septin10	T	C	10: 59,028,000 (GRCm39)	N107S	possibly damaging	Het
Sos1	A	G	17: 80,726,445 (GRCm39)	F835L	probably benign	Het
Spg11	T	C	2: 121,888,879 (GRCm39)	D2164G	probably damaging	Het
Svbp	A	G	4: 119,053,127 (GRCm39)	E8G	probably damaging	Het
Tgm3	T	A	2: 129,883,899 (GRCm39)	M519K	probably damaging	Het
Tspan12	A	G	6: 21,799,876 (GRCm39)		probably null	Het
Vps52	T	C	17: 34,177,324 (GRCm39)	V122A	probably damaging	Het
Wipf1	T	C	2: 73,264,427 (GRCm39)	Y458C	probably damaging	Het
Zfp369	T	A	13: 65,442,265 (GRCm39)	D286E	possibly damaging	Het

Other mutations in Smu1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03271:Smu1	APN	4	40,738,408 (GRCm39)	missense	probably benign	0.11
IGL03329:Smu1	APN	4	40,739,568 (GRCm39)	missense	possibly damaging	0.81
PIT4585001:Smu1	UTSW	4	40,739,623 (GRCm39)	missense	probably benign
R0172:Smu1	UTSW	4	40,738,439 (GRCm39)	missense	probably benign	0.00
R1109:Smu1	UTSW	4	40,755,722 (GRCm39)	missense	probably benign	0.12
R1552:Smu1	UTSW	4	40,748,570 (GRCm39)	missense	probably damaging	1.00
R1799:Smu1	UTSW	4	40,745,537 (GRCm39)	missense	probably damaging	1.00
R2093:Smu1	UTSW	4	40,738,438 (GRCm39)	missense	probably benign	0.12
R2143:Smu1	UTSW	4	40,744,073 (GRCm39)	missense	probably damaging	0.99
R3082:Smu1	UTSW	4	40,745,567 (GRCm39)	missense	probably damaging	1.00
R3083:Smu1	UTSW	4	40,745,567 (GRCm39)	missense	probably damaging	1.00
R3113:Smu1	UTSW	4	40,748,658 (GRCm39)	missense	probably benign	0.03
R3157:Smu1	UTSW	4	40,754,529 (GRCm39)	missense	possibly damaging	0.82
R3158:Smu1	UTSW	4	40,754,529 (GRCm39)	missense	possibly damaging	0.82
R3159:Smu1	UTSW	4	40,754,529 (GRCm39)	missense	possibly damaging	0.82
R3409:Smu1	UTSW	4	40,752,008 (GRCm39)	missense	probably benign
R3411:Smu1	UTSW	4	40,752,008 (GRCm39)	missense	probably benign
R4581:Smu1	UTSW	4	40,737,401 (GRCm39)	splice site	probably null
R5106:Smu1	UTSW	4	40,743,104 (GRCm39)	missense	possibly damaging	0.82
R7747:Smu1	UTSW	4	40,748,600 (GRCm39)	missense	probably benign	0.44
R9029:Smu1	UTSW	4	40,738,361 (GRCm39)	missense	probably damaging	1.00
R9069:Smu1	UTSW	4	40,745,558 (GRCm39)	missense	probably damaging	1.00
R9537:Smu1	UTSW	4	40,755,671 (GRCm39)	missense	probably benign	0.01
R9797:Smu1	UTSW	4	40,739,538 (GRCm39)	missense	possibly damaging	0.69

Posted On

2016-08-02