Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03342:Prickle3'

417273

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Prickle3

Ensembl Gene

ENSMUSG00000031145

Gene Name

prickle planar cell polarity protein 3

Synonyms

Sfc16, Lmo6

Accession Numbers

Essential gene?

Not available question?

Stock #

IGL03342

Quality Score

Status

Chromosome

Chromosomal Location

7523584-7534425 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 7529735 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 47 (D47G)

Ref Sequence

ENSEMBL: ENSMUSP00000127892 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033485] [ENSMUST00000033486] [ENSMUST00000129662]

AlphaFold

Q80VL3

Predicted Effect

probably benign
Transcript: ENSMUST00000033485
AA Change: D115G

PolyPhen 2 Score 0.150 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000033485
Gene: ENSMUSG00000031145
AA Change: D115G

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
Pfam:PET	76	176	1.8e-44	PFAM
LIM	185	242	3.15e-12	SMART
LIM	250	302	1.42e-10	SMART
LIM	310	365	1.46e-7	SMART
low complexity region	383	409	N/A	INTRINSIC
low complexity region	497	542	N/A	INTRINSIC
low complexity region	543	573	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000033486

SMART Domains

Protein: ENSMUSP00000033486
Gene: ENSMUSG00000031146

Domain	Start	End	E-Value	Type
Pfam:MARVEL	19	132	2e-14	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123172

SMART Domains

Protein: ENSMUSP00000129706
Gene: ENSMUSG00000031145

Domain	Start	End	E-Value	Type
Pfam:PET	17	97	7.2e-33	PFAM
LIM	104	161	3.15e-12	SMART
LIM	169	221	1.42e-10	SMART
LIM	229	284	1.46e-7	SMART
low complexity region	302	328	N/A	INTRINSIC
low complexity region	416	461	N/A	INTRINSIC
low complexity region	462	492	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000129662
AA Change: D47G

PolyPhen 2 Score 0.150 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000127892
Gene: ENSMUSG00000031145
AA Change: D47G

Domain	Start	End	E-Value	Type
Pfam:PET	5	110	1.6e-45	PFAM
LIM	117	174	3.15e-12	SMART
LIM	182	234	1.42e-10	SMART
LIM	242	297	1.46e-7	SMART
low complexity region	315	341	N/A	INTRINSIC
low complexity region	429	474	N/A	INTRINSIC
low complexity region	475	505	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136155

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141876

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153994

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] LIM domain only 6 is a three LIM domain-containing protein. The LIM domain is a cysteine-rich sequence motif that binds zinc atoms to form a specific protein-binding interface for protein-protein interactions. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca5	G	A	11: 110,178,517 (GRCm39)	T1152M	possibly damaging	Het
Abcg2	G	T	6: 58,642,120 (GRCm39)	R136I	probably damaging	Het
Acap2	A	G	16: 30,924,310 (GRCm39)	V641A	probably damaging	Het
Afg3l2	A	T	18: 67,540,390 (GRCm39)	D706E	probably benign	Het
Bbs1	A	T	19: 4,947,621 (GRCm39)	L311Q	probably damaging	Het
Cacna1e	A	G	1: 154,342,690 (GRCm39)		probably null	Het
Car2	A	T	3: 14,960,629 (GRCm39)	D129V	probably benign	Het
Catsper2	T	C	2: 121,237,217 (GRCm39)	I228V	probably damaging	Het
Cdhr3	C	A	12: 33,101,054 (GRCm39)	R452M	probably benign	Het
Chrm1	A	T	19: 8,656,672 (GRCm39)	Q459L	probably benign	Het
Cnbd1	C	T	4: 19,098,264 (GRCm39)		probably benign	Het
Coa7	A	G	4: 108,189,426 (GRCm39)	D42G	probably damaging	Het
Ctsz	T	C	2: 174,270,933 (GRCm39)	Y187C	possibly damaging	Het
Cxcr6	C	T	9: 123,639,472 (GRCm39)	Q165*	probably null	Het
Cyp3a11	G	A	5: 145,791,927 (GRCm39)	P489S	probably damaging	Het
Cyp4f15	A	T	17: 32,916,910 (GRCm39)	I276F	probably damaging	Het
Dsg1b	T	A	18: 20,542,517 (GRCm39)	M1008K	probably benign	Het
Dsg4	T	A	18: 20,584,880 (GRCm39)	I198N	probably damaging	Het
Dtymk	C	A	1: 93,722,541 (GRCm39)	E87D	probably benign	Het
Dysf	T	A	6: 84,167,854 (GRCm39)	D1749E	probably benign	Het
Dzip3	G	T	16: 48,749,986 (GRCm39)	Q1050K	probably damaging	Het
Echs1	C	T	7: 139,690,026 (GRCm39)		probably benign	Het
Enc1	T	A	13: 97,382,978 (GRCm39)	I496N	possibly damaging	Het
Epc2	A	T	2: 49,426,658 (GRCm39)	Y139F	probably benign	Het
Exo1	A	T	1: 175,719,693 (GRCm39)	N246I	probably benign	Het
Flg2	A	G	3: 93,108,542 (GRCm39)	K190R	probably damaging	Het
Gm5424	A	T	10: 61,907,971 (GRCm39)		noncoding transcript	Het
Gpbp1l1	A	C	4: 116,431,740 (GRCm39)	T133P	probably benign	Het
Gpr155	A	G	2: 73,180,022 (GRCm39)	F146S	probably damaging	Het
Grm1	T	A	10: 10,955,715 (GRCm39)	I190L	probably benign	Het
Hif3a	C	T	7: 16,775,047 (GRCm39)	R515H	possibly damaging	Het
Itprid2	G	A	2: 79,490,796 (GRCm39)	M971I	probably damaging	Het
Kdm5b	G	A	1: 134,530,314 (GRCm39)	D442N	probably benign	Het
Manba	A	T	3: 135,223,748 (GRCm39)	I212F	possibly damaging	Het
Map3k13	A	G	16: 21,710,981 (GRCm39)	E88G	possibly damaging	Het
Mapk7	A	G	11: 61,382,216 (GRCm39)	L163P	probably damaging	Het
Med1	A	T	11: 98,080,006 (GRCm39)		probably null	Het
Mtrf1	T	A	14: 79,653,312 (GRCm39)		probably null	Het
Mtrf1	A	G	14: 79,653,420 (GRCm39)	D365G	possibly damaging	Het
Mtrf1	C	T	14: 79,653,311 (GRCm39)		probably benign	Het
Myadm	C	T	7: 3,345,403 (GRCm39)	T55I	possibly damaging	Het
Nlgn1	A	T	3: 26,187,411 (GRCm39)	I158N	probably damaging	Het
Nlrc4	A	G	17: 74,752,313 (GRCm39)	L690P	probably damaging	Het
Nlrp1a	A	T	11: 71,013,617 (GRCm39)	D544E	probably benign	Het
Nlrp2	A	T	7: 5,320,482 (GRCm39)	L20Q	probably damaging	Het
Or1e30	T	A	11: 73,678,309 (GRCm39)	S182T	probably benign	Het
Or8k21	A	T	2: 86,145,579 (GRCm39)	I17N	possibly damaging	Het
Or9i16	A	G	19: 13,864,801 (GRCm39)	Y258H	probably damaging	Het
Padi3	G	A	4: 140,537,909 (GRCm39)	Q4*	probably null	Het
Pfkl	A	T	10: 77,841,309 (GRCm39)	I13K	possibly damaging	Het
Pinx1	A	G	14: 64,157,018 (GRCm39)	D315G	probably benign	Het
Psmd10	A	T	X: 139,857,403 (GRCm39)	V5E	probably damaging	Het
Rasgrf2	C	A	13: 92,136,098 (GRCm39)	V605F	probably damaging	Het
Smarca1	G	T	X: 46,981,146 (GRCm39)	A84D	probably damaging	Het
Sp2	A	G	11: 96,852,588 (GRCm39)	V112A	probably damaging	Het
Srgap3	G	A	6: 112,752,648 (GRCm39)	R279C	probably damaging	Het
Trav21-dv12	T	C	14: 54,113,501 (GRCm39)	L10P	unknown	Het
Vmn1r236	A	T	17: 21,507,236 (GRCm39)	H118L	probably benign	Het
Vmn2r120	A	G	17: 57,816,372 (GRCm39)	M661T	probably benign	Het
Vmn2r17	A	T	5: 109,575,782 (GRCm39)	I218F	probably damaging	Het
Vmn2r41	G	T	7: 8,141,682 (GRCm39)	A594D	probably damaging	Het
Zc2hc1a	A	G	3: 7,589,283 (GRCm39)	E103G	possibly damaging	Het
Zfp62	G	T	11: 49,106,298 (GRCm39)	G130*	probably null	Het

Other mutations in Prickle3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03171:Prickle3	APN	X	7,531,526 (GRCm39)	missense	probably damaging	1.00

Posted On

2016-08-02