Mutagenetix > Incidental Mutation

Incidental Mutation 'R6236:Prmt6'

504931

Institutional Source

Beutler Lab

Gene Symbol

Prmt6

Ensembl Gene

ENSMUSG00000049300

Gene Name

protein arginine N-methyltransferase 6

Synonyms

Hrmt1l6

MMRRC Submission

044400-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6236 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

110153425-110158314 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 110157214 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Methionine at position 358 (I358M)

Ref Sequence

ENSEMBL: ENSMUSP00000140836 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000106567] [ENSMUST00000168412] [ENSMUST00000190378]

AlphaFold

Q6NZB1

Predicted Effect

probably benign
Transcript: ENSMUST00000106567
AA Change: I358M

PolyPhen 2 Score 0.164 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000102177
Gene: ENSMUSG00000049300
AA Change: I358M

Domain	Start	End	E-Value	Type
low complexity region	15	35	N/A	INTRINSIC
Pfam:PRMT5	42	347	5.3e-9	PFAM
Pfam:Met_10	50	206	6.7e-8	PFAM
Pfam:Methyltransf_9	57	218	2.6e-8	PFAM
Pfam:PrmA	70	187	1.6e-10	PFAM
Pfam:MTS	75	189	8.8e-7	PFAM
Pfam:Methyltransf_18	85	191	1.8e-8	PFAM
Pfam:Methyltransf_11	90	188	6.6e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000168412
AA Change: I358M

PolyPhen 2 Score 0.164 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000129801
Gene: ENSMUSG00000049300
AA Change: I358M

Domain	Start	End	E-Value	Type
low complexity region	15	35	N/A	INTRINSIC
Pfam:PRMT5	42	347	1.3e-10	PFAM
Pfam:Met_10	51	184	1.2e-7	PFAM
Pfam:Methyltransf_9	57	218	2.6e-8	PFAM
Pfam:PrmA	70	187	1.4e-10	PFAM
Pfam:MTS	75	194	5.8e-8	PFAM
Pfam:Methyltransf_18	85	192	4.2e-13	PFAM
Pfam:Methyltransf_26	86	191	6e-10	PFAM
Pfam:Methyltransf_11	90	188	5.9e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000190378
AA Change: I358M

PolyPhen 2 Score 0.164 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000140836
Gene: ENSMUSG00000049300
AA Change: I358M

Domain	Start	End	E-Value	Type
low complexity region	15	35	N/A	INTRINSIC
Pfam:PRMT5	42	347	1.3e-10	PFAM
Pfam:Met_10	51	184	1.2e-7	PFAM
Pfam:Methyltransf_9	57	218	2.6e-8	PFAM
Pfam:PrmA	70	187	1.4e-10	PFAM
Pfam:MTS	75	194	5.8e-8	PFAM
Pfam:Methyltransf_18	85	192	4.2e-13	PFAM
Pfam:Methyltransf_26	86	191	6e-10	PFAM
Pfam:Methyltransf_11	90	188	5.9e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197569

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.6%

Validation Efficiency

100% (57/57)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the arginine N-methyltransferase family, which catalyze the sequential transfer of methyl group from S-adenosyl-L-methionine to the side chain nitrogens of arginine residues within proteins, to form methylated arginine derivatives and S-adenosyl-L-homocysteine. This protein can catalyze both, the formation of omega-N monomethylarginine and asymmetrical dimethylarginine, with a strong preference for the latter. It specifically mediates the asymmetric dimethylation of Arg2 of histone H3, and the methylated form represents a specific tag for epigenetic transcriptional repression. This protein also forms a complex with, and methylates DNA polymerase beta, resulting in stimulation of polymerase activity by enhancing DNA binding and processivity. [provided by RefSeq, Sep 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased mouse embryonic fibroblast proliferation and early cellular replicative senescence. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acap3	A	G	4: 155,989,664 (GRCm39)	T703A	possibly damaging	Het
Acd	C	T	8: 106,427,127 (GRCm39)	A49T	probably benign	Het
Acer1	T	A	17: 57,262,231 (GRCm39)	I224F	probably benign	Het
Acvr1	T	C	2: 58,367,678 (GRCm39)	D161G	probably benign	Het
Catsper4	T	C	4: 133,948,887 (GRCm39)	I111V	probably benign	Het
Cfap210	A	C	2: 69,588,385 (GRCm39)		probably null	Het
Chst14	T	A	2: 118,757,997 (GRCm39)	C264S	probably damaging	Het
Clnk	T	C	5: 38,870,542 (GRCm39)	T339A	probably benign	Het
Cnot4	T	C	6: 35,045,608 (GRCm39)	K201R	probably benign	Het
Col19a1	A	G	1: 24,319,030 (GRCm39)	V1020A	probably damaging	Het
Cts6	C	A	13: 61,344,192 (GRCm39)	E287*	probably null	Het
Dbf4	T	C	5: 8,448,579 (GRCm39)		probably benign	Het
Diaph3	G	A	14: 87,275,004 (GRCm39)	R140*	probably null	Het
Faah	T	C	4: 115,856,786 (GRCm39)	I459V	probably benign	Het
Fbxw2	A	T	2: 34,712,845 (GRCm39)	L72H	probably damaging	Het
Fstl4	G	A	11: 53,077,162 (GRCm39)	G640S	probably benign	Het
Gabrb1	C	T	5: 72,265,663 (GRCm39)	T186M	probably damaging	Het
Gata2	T	C	6: 88,179,548 (GRCm39)		probably null	Het
Ifi203	A	G	1: 173,761,479 (GRCm39)	V190A	probably benign	Het
Kdm3a	T	C	6: 71,588,641 (GRCm39)	E456G	probably benign	Het
Kl	A	T	5: 150,876,755 (GRCm39)	T192S	probably damaging	Het
Klhl3	G	A	13: 58,232,876 (GRCm39)	A77V	probably damaging	Het
Klri2	A	G	6: 129,715,858 (GRCm39)	F114L	probably benign	Het
Lonp2	A	T	8: 87,363,215 (GRCm39)	R278*	probably null	Het
Lrp5	A	T	19: 3,680,483 (GRCm39)		probably null	Het
Med13	T	A	11: 86,219,357 (GRCm39)	H363L	probably damaging	Het
Metap1d	T	G	2: 71,346,022 (GRCm39)	F194L	probably benign	Het
Misp	A	G	10: 79,662,956 (GRCm39)	K458E	probably benign	Het
Muc6	G	T	7: 141,218,685 (GRCm39)	T1996N	possibly damaging	Het
Myh2	A	G	11: 67,081,157 (GRCm39)	T1258A	probably benign	Het
Nipbl	T	A	15: 8,354,064 (GRCm39)	D1691V	possibly damaging	Het
Nr1i2	C	T	16: 38,086,300 (GRCm39)	C55Y	probably damaging	Het
Or11h7	T	C	14: 50,891,257 (GRCm39)	S188P	probably damaging	Het
Or7g21	A	T	9: 19,032,409 (GRCm39)	I50F	possibly damaging	Het
Pcdhgb4	T	C	18: 37,854,345 (GRCm39)	Y247H	probably damaging	Het
Ric1	T	A	19: 29,572,826 (GRCm39)	D755E	possibly damaging	Het
Sez6l	G	T	5: 112,623,110 (GRCm39)	T147K	possibly damaging	Het
Ski	A	G	4: 155,244,001 (GRCm39)	F451S	probably benign	Het
Slc45a2	C	T	15: 11,022,158 (GRCm39)	T300I	probably benign	Het
Smarca2	T	C	19: 26,673,613 (GRCm39)	V1050A	probably benign	Het
Spag1	T	C	15: 36,211,281 (GRCm39)	S476P	probably damaging	Het
Sptbn2	T	A	19: 4,798,166 (GRCm39)	S1964T	probably benign	Het
Sucla2	T	A	14: 73,831,190 (GRCm39)	D434E	probably benign	Het
Tbl3	G	A	17: 24,919,717 (GRCm39)	T779I	probably benign	Het
Tlr2	T	A	3: 83,745,438 (GRCm39)	E215V	probably benign	Het
Tomm40	G	A	7: 19,437,281 (GRCm39)	P227S	probably benign	Het
Tpp2	T	A	1: 44,016,477 (GRCm39)	S711T	probably benign	Het
Traj32	T	A	14: 54,423,565 (GRCm39)	Y2*	probably null	Het
Trim34b	A	G	7: 103,985,525 (GRCm39)	R387G	probably damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Usp5	T	C	6: 124,795,441 (GRCm39)	T651A	probably benign	Het
Vmn1r188	T	C	13: 22,272,414 (GRCm39)	S123P	probably damaging	Het
Zdhhc14	T	C	17: 5,543,918 (GRCm39)	L66P	probably damaging	Het
Zfp712	C	T	13: 67,188,685 (GRCm39)	C614Y	probably damaging	Het
Zfp827	A	G	8: 79,797,105 (GRCm39)	K397R	probably damaging	Het

Other mutations in Prmt6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0029:Prmt6	UTSW	3	110,157,214 (GRCm39)	missense	probably benign	0.16
R0928:Prmt6	UTSW	3	110,157,998 (GRCm39)	missense	probably damaging	1.00
R1672:Prmt6	UTSW	3	110,157,887 (GRCm39)	missense	possibly damaging	0.79
R1748:Prmt6	UTSW	3	110,157,683 (GRCm39)	missense	probably benign
R3765:Prmt6	UTSW	3	110,157,510 (GRCm39)	nonsense	probably null
R3835:Prmt6	UTSW	3	110,158,121 (GRCm39)	missense	possibly damaging	0.75
R4027:Prmt6	UTSW	3	110,157,257 (GRCm39)	missense	probably damaging	0.99
R7164:Prmt6	UTSW	3	110,157,680 (GRCm39)	missense	probably benign
R7658:Prmt6	UTSW	3	110,157,701 (GRCm39)	missense	possibly damaging	0.51
R7821:Prmt6	UTSW	3	110,158,303 (GRCm39)	start gained	probably benign
R8178:Prmt6	UTSW	3	110,158,140 (GRCm39)	missense	probably damaging	1.00
R8546:Prmt6	UTSW	3	110,158,034 (GRCm39)	missense	possibly damaging	0.67
R8927:Prmt6	UTSW	3	110,158,248 (GRCm39)	missense	probably benign
R8928:Prmt6	UTSW	3	110,158,248 (GRCm39)	missense	probably benign
R9015:Prmt6	UTSW	3	110,157,214 (GRCm39)	missense	probably benign	0.16
R9755:Prmt6	UTSW	3	110,157,359 (GRCm39)	missense	probably damaging	1.00
Z1176:Prmt6	UTSW	3	110,157,446 (GRCm39)	missense	probably benign	0.22

Predicted Primers

PCR Primer
(F):5'- CACTGCCAGAAGAATGTCCTC -3'
(R):5'- TCGCCGTCTGGTTTCAAGTG -3'

Sequencing Primer
(F):5'- TGCCAGAAGAATGTCCTCAAATG -3'
(R):5'- TCAAGTGACCTTTCCCGGAG -3'

Posted On

2018-02-28